Wall clock time and date at job start Mon Mar 30 2020 07:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47290 * 2 1 4 4 N 1.46895 * 109.47600 * 120.00525 * 2 1 3 5 5 C 1.46908 * 110.99763 * 293.38802 * 4 2 1 6 6 C 1.50695 * 109.47196 * 160.14250 * 5 4 2 7 7 H 1.08003 * 119.99965 * 4.77171 * 6 5 4 8 8 C 1.37881 * 120.00025 * 184.77890 * 6 5 4 9 9 N 1.31512 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00118 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47428 * 59.99180 * 10 8 6 12 12 H 1.48497 * 109.47301 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46915 * 299.99347 * 10 8 6 14 14 C 1.46898 * 111.00423 * 169.43222 * 4 2 1 15 15 C 1.50705 * 109.46814 * 293.95084 * 14 4 2 16 16 C 1.38537 * 120.47085 * 104.99712 * 15 14 4 17 17 C 1.38656 * 118.50353 * 180.02562 * 16 15 14 18 18 C 1.38509 * 119.38443 * 0.02562 * 17 16 15 19 19 N 1.31564 * 120.90823 * 359.97438 * 18 17 16 20 20 C 1.32813 * 121.62633 * 0.02562 * 19 18 17 21 21 C 1.43195 * 119.74336 * 179.72338 * 20 19 18 22 22 N 4.83338 * 101.19433 * 150.10109 * 2 1 3 23 23 H 1.09001 * 109.46695 * 301.29886 * 1 2 3 24 24 H 1.08993 * 109.47353 * 61.30669 * 1 2 3 25 25 H 1.09004 * 109.47214 * 181.30729 * 1 2 3 26 26 H 1.09001 * 109.46791 * 240.00414 * 2 1 3 27 27 H 1.09002 * 109.47799 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47684 * 300.00764 * 3 2 1 29 29 H 1.08999 * 109.47362 * 60.00325 * 3 2 1 30 30 H 1.09003 * 109.46279 * 280.13665 * 5 4 2 31 31 H 1.08993 * 109.47234 * 40.13736 * 5 4 2 32 32 H 0.97001 * 119.99929 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46992 * 173.95629 * 14 4 2 34 34 H 1.08998 * 109.46942 * 53.95039 * 14 4 2 35 35 H 1.07995 * 120.74740 * 0.04641 * 16 15 14 36 36 H 1.08004 * 120.30800 * 179.97438 * 17 16 15 37 37 H 1.07993 * 119.54601 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 1.6820 0.0586 2.4158 6 6 1.7441 -0.8614 3.6077 7 1 2.0823 -1.8799 3.4867 8 6 1.3689 -0.4028 4.8528 9 7 0.9574 0.8375 5.0002 10 14 1.4451 -1.5434 6.3301 11 1 2.8418 -2.0086 6.5249 12 1 0.9931 -0.8143 7.5422 13 1 0.5614 -2.7140 6.0978 14 6 3.4663 -0.9338 1.1142 15 6 3.7485 -1.9065 -0.0018 16 6 4.2853 -1.4646 -1.2000 17 6 4.5281 -2.3946 -2.1994 18 6 4.2292 -3.7281 -1.9739 19 7 3.7198 -4.1219 -0.8266 20 6 3.4720 -3.2639 0.1565 21 6 2.9114 -3.7357 1.3868 22 7 2.4684 -4.1104 2.3635 23 1 -0.3633 0.5339 0.8781 24 1 -0.3634 0.4934 -0.9014 25 1 -0.3634 -1.0274 0.0234 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 2.3934 0.8738 2.5486 31 1 0.6754 0.4662 2.3234 32 1 0.6939 1.1602 5.8761 33 1 3.8214 -1.3498 2.0571 34 1 3.9804 0.0065 0.9152 35 1 4.5099 -0.4192 -1.3522 36 1 4.9456 -2.0820 -3.1451 37 1 4.4176 -4.4547 -2.7503 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061659131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:20 Heat of formation + Delta-G solvation = 71.460371 kcal Electronic energy + Delta-G solvation = -19448.824115 eV Core-core repulsion = 16612.590949 eV Total energy + Delta-G solvation = -2836.233166 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45452 -37.78335 -35.93736 -33.19838 -32.75142 -32.06788 -30.41051 -27.37842 -26.60120 -25.20104 -24.48111 -22.42915 -21.96981 -19.28534 -18.59410 -16.88070 -16.33327 -15.76729 -15.12411 -14.89083 -14.37860 -14.18241 -13.94999 -13.51803 -13.15608 -13.07475 -12.55618 -12.42490 -12.29607 -12.21012 -11.96477 -11.77764 -11.52464 -11.08383 -10.98169 -10.83502 -10.62303 -10.51524 -10.25573 -9.82841 -9.68353 -9.51162 -9.20904 -8.88569 -8.36126 -7.32452 -5.98462 -3.98314 0.70704 1.18629 3.13488 3.19366 3.39978 3.42102 3.50269 3.85032 4.15362 4.48397 4.64916 4.69747 4.87255 4.95918 5.04431 5.29670 5.37940 5.40534 5.53573 5.59256 5.74613 5.84877 6.00139 6.03002 6.13957 6.20781 6.32240 6.34151 6.40269 6.52747 6.71014 6.80029 7.19887 7.30974 7.76231 7.85926 8.02447 8.08245 8.15554 8.54117 9.11404 9.66608 11.11918 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019776 B = 0.007453 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.489910 B = 3755.867538 C = 4709.989157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.522 5.522 5 C 0.193 3.807 6 C -0.508 4.508 7 H 0.070 0.930 8 C 0.058 3.942 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.089 3.911 15 C -0.066 4.066 16 C -0.075 4.075 17 C -0.153 4.153 18 C 0.095 3.905 19 N -0.457 5.457 20 C 0.216 3.784 21 C 0.261 3.739 22 N -0.368 5.368 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.066 0.934 30 H -0.008 1.008 31 H 0.041 0.959 32 H 0.260 0.740 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 -1.799 -16.431 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.247 5.247 5 C 0.068 3.932 6 C -0.546 4.546 7 H 0.088 0.912 8 C -0.143 4.143 9 N -0.541 5.541 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.200 1.200 14 C -0.039 4.039 15 C -0.071 4.071 16 C -0.102 4.102 17 C -0.173 4.173 18 C -0.065 4.065 19 N -0.167 5.167 20 C 0.078 3.922 21 C -0.057 4.057 22 N -0.045 5.045 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.010 0.990 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.959 -3.593 -14.599 16.173 hybrid contribution 0.754 1.384 0.223 1.591 sum 6.713 -2.209 -14.376 16.019 Atomic orbital electron populations 1.21797 0.94764 1.02078 1.01068 1.21654 0.95878 0.91953 0.94028 1.22467 1.00670 0.98888 1.02195 1.62435 1.09826 1.49087 1.03310 1.19808 0.96461 0.92090 0.84807 1.21283 1.43229 0.98628 0.91473 0.91224 1.24915 0.95437 0.95035 0.98907 1.69940 1.45224 1.15231 1.23718 0.86647 0.78638 0.80960 0.81789 1.20362 1.21499 1.20020 1.21067 0.91680 0.95294 0.95879 1.21077 0.95284 0.94125 0.96606 1.21534 0.96233 1.00578 0.91816 1.22303 1.00389 0.94413 1.00218 1.22673 0.95377 0.94727 0.93724 1.67527 1.10722 1.38037 1.00423 1.16213 0.98082 0.89091 0.88823 1.24610 0.94729 0.93921 0.92393 1.81212 1.05936 1.07422 1.09888 0.91738 0.93551 0.92433 0.91764 0.93299 0.93241 0.91474 0.98979 0.94067 0.93026 0.88673 0.93722 0.84183 0.84317 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.15 37.16 0.34 -2.00 16 2 C 0.07 1.23 2.79 -67.72 -0.19 1.04 16 3 C -0.18 -2.80 8.52 37.15 0.32 -2.48 16 4 N -0.52 -10.45 4.24 -229.52 -0.97 -11.42 16 5 C 0.19 4.75 3.33 -4.97 -0.02 4.73 16 6 C -0.51 -14.18 8.62 -34.44 -0.30 -14.47 16 7 H 0.07 1.96 6.71 -52.48 -0.35 1.60 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 10 Si 0.89 22.78 29.54 -169.99 -5.02 17.76 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.09 1.56 4.18 -4.97 -0.02 1.54 16 15 C -0.07 -0.96 4.49 -104.07 -0.47 -1.43 16 16 C -0.08 -0.81 8.97 -39.32 -0.35 -1.16 16 17 C -0.15 -1.33 10.11 -39.33 -0.40 -1.72 16 18 C 0.09 0.96 11.18 -17.57 -0.20 0.77 16 19 N -0.46 -6.54 10.28 -11.16 -0.11 -6.66 16 20 C 0.22 3.50 6.58 -85.08 -0.56 2.94 16 21 C 0.26 5.10 14.21 -22.47 -0.32 4.79 16 22 N -0.37 -8.14 17.60 41.84 0.74 -7.40 16 23 H 0.06 1.22 6.32 -51.93 -0.33 0.89 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 27 H 0.05 0.69 6.60 -51.93 -0.34 0.35 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 30 H -0.01 -0.20 7.33 -51.93 -0.38 -0.58 16 31 H 0.04 1.10 5.89 -51.93 -0.31 0.79 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.10 1.92 6.88 -51.93 -0.36 1.56 16 34 H 0.04 0.72 6.29 -51.93 -0.33 0.39 16 35 H 0.14 1.22 8.05 -52.49 -0.42 0.79 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -31.84 309.87 -6.97 -38.81 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.74 Total: -3.87 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.26 Total: -5.90 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.38 Total: -51.46 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.84 -6.97 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061659131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.265 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds