Wall clock time and date at job start Mon Mar 30 2020 07:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47290 * 2 1 4 4 N 1.46895 * 109.47600 * 120.00525 * 2 1 3 5 5 C 1.46908 * 110.99763 * 293.38802 * 4 2 1 6 6 C 1.50695 * 109.47196 * 160.14250 * 5 4 2 7 7 H 1.08003 * 119.99965 * 4.77171 * 6 5 4 8 8 C 1.37881 * 120.00025 * 184.77890 * 6 5 4 9 9 N 1.31512 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00118 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47428 * 59.99180 * 10 8 6 12 12 H 1.48497 * 109.47301 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46915 * 299.99347 * 10 8 6 14 14 C 1.46898 * 111.00423 * 169.43222 * 4 2 1 15 15 C 1.50705 * 109.46814 * 293.95084 * 14 4 2 16 16 C 1.38537 * 120.47085 * 104.99712 * 15 14 4 17 17 C 1.38656 * 118.50353 * 180.02562 * 16 15 14 18 18 C 1.38509 * 119.38443 * 0.02562 * 17 16 15 19 19 N 1.31564 * 120.90823 * 359.97438 * 18 17 16 20 20 C 1.32813 * 121.62633 * 0.02562 * 19 18 17 21 21 C 1.43195 * 119.74336 * 179.72338 * 20 19 18 22 22 N 4.83338 * 101.19433 * 150.10109 * 2 1 3 23 23 H 1.09001 * 109.46695 * 301.29886 * 1 2 3 24 24 H 1.08993 * 109.47353 * 61.30669 * 1 2 3 25 25 H 1.09004 * 109.47214 * 181.30729 * 1 2 3 26 26 H 1.09001 * 109.46791 * 240.00414 * 2 1 3 27 27 H 1.09002 * 109.47799 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47684 * 300.00764 * 3 2 1 29 29 H 1.08999 * 109.47362 * 60.00325 * 3 2 1 30 30 H 1.09003 * 109.46279 * 280.13665 * 5 4 2 31 31 H 1.08993 * 109.47234 * 40.13736 * 5 4 2 32 32 H 0.97001 * 119.99929 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46992 * 173.95629 * 14 4 2 34 34 H 1.08998 * 109.46942 * 53.95039 * 14 4 2 35 35 H 1.07995 * 120.74740 * 0.04641 * 16 15 14 36 36 H 1.08004 * 120.30800 * 179.97438 * 17 16 15 37 37 H 1.07993 * 119.54601 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 1.6820 0.0586 2.4158 6 6 1.7441 -0.8614 3.6077 7 1 2.0823 -1.8799 3.4867 8 6 1.3689 -0.4028 4.8528 9 7 0.9574 0.8375 5.0002 10 14 1.4451 -1.5434 6.3301 11 1 2.8418 -2.0086 6.5249 12 1 0.9931 -0.8143 7.5422 13 1 0.5614 -2.7140 6.0978 14 6 3.4663 -0.9338 1.1142 15 6 3.7485 -1.9065 -0.0018 16 6 4.2853 -1.4646 -1.2000 17 6 4.5281 -2.3946 -2.1994 18 6 4.2292 -3.7281 -1.9739 19 7 3.7198 -4.1219 -0.8266 20 6 3.4720 -3.2639 0.1565 21 6 2.9114 -3.7357 1.3868 22 7 2.4684 -4.1104 2.3635 23 1 -0.3633 0.5339 0.8781 24 1 -0.3634 0.4934 -0.9014 25 1 -0.3634 -1.0274 0.0234 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 2.3934 0.8738 2.5486 31 1 0.6754 0.4662 2.3234 32 1 0.6939 1.1602 5.8761 33 1 3.8214 -1.3498 2.0571 34 1 3.9804 0.0065 0.9152 35 1 4.5099 -0.4192 -1.3522 36 1 4.9456 -2.0820 -3.1451 37 1 4.4176 -4.4547 -2.7503 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061659131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:19 Heat of formation + Delta-G solvation = 49.700320 kcal Electronic energy + Delta-G solvation = -19449.767701 eV Core-core repulsion = 16612.590949 eV Total energy + Delta-G solvation = -2837.176752 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47883 -39.21925 -37.43735 -34.91199 -34.25937 -33.09028 -31.90290 -29.07890 -27.95399 -26.70182 -25.50496 -24.28379 -23.07271 -20.50566 -19.95279 -18.68894 -17.57773 -16.85514 -16.76926 -16.31321 -15.96240 -15.50467 -15.32480 -14.80698 -14.52418 -14.12742 -14.09067 -13.99054 -13.75503 -13.72945 -13.57144 -13.15255 -12.96215 -12.82364 -12.71196 -12.34176 -12.28681 -12.11006 -12.00585 -11.34055 -11.22915 -10.72737 -10.61128 -10.51580 -9.93239 -8.92111 -8.20188 -6.25379 -0.30691 0.30136 1.30272 1.32593 1.42022 1.73063 2.00203 2.36212 2.67949 2.95083 3.11728 3.38457 3.60511 3.89905 4.06058 4.08922 4.12467 4.29695 4.42735 4.51940 4.55522 4.67562 4.80514 4.83605 4.93169 4.98339 5.07526 5.18084 5.19300 5.25058 5.36693 5.42696 5.49768 5.69377 5.72961 6.13016 6.41079 6.53105 6.70570 6.88412 6.93144 7.42864 8.89260 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019776 B = 0.007453 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.489910 B = 3755.867538 C = 4709.989157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 C -0.175 4.175 4 N -0.537 5.537 5 C 0.215 3.785 6 C -0.519 4.519 7 H 0.062 0.938 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.942 3.058 11 H -0.275 1.275 12 H -0.276 1.276 13 H -0.282 1.282 14 C 0.094 3.906 15 C -0.073 4.073 16 C -0.069 4.069 17 C -0.119 4.119 18 C 0.099 3.901 19 N -0.481 5.481 20 C 0.179 3.821 21 C 0.279 3.721 22 N -0.439 5.439 23 H 0.031 0.969 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.030 0.970 30 H -0.028 1.028 31 H 0.016 0.984 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 -1.569 -20.491 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.233 4.233 4 N -0.261 5.261 5 C 0.089 3.911 6 C -0.558 4.558 7 H 0.080 0.920 8 C -0.187 4.187 9 N -0.570 5.570 10 Si 0.769 3.231 11 H -0.200 1.200 12 H -0.201 1.201 13 H -0.208 1.208 14 C -0.034 4.034 15 C -0.079 4.079 16 C -0.095 4.095 17 C -0.138 4.138 18 C -0.061 4.061 19 N -0.192 5.192 20 C 0.043 3.957 21 C -0.037 4.037 22 N -0.116 5.116 23 H 0.050 0.950 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.049 0.951 30 H -0.010 1.010 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.188 0.812 36 H 0.209 0.791 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.710 -3.367 -18.658 20.467 hybrid contribution 0.298 1.285 1.240 1.810 sum 8.008 -2.082 -17.418 19.284 Atomic orbital electron populations 1.21785 0.95268 1.01081 1.01294 1.21788 0.95534 0.92967 0.93230 1.22368 1.01474 0.97543 1.01958 1.62247 1.12010 1.48943 1.02878 1.19312 0.94459 0.91007 0.86285 1.21692 1.42242 0.98830 0.92995 0.91959 1.25593 0.95564 0.96252 1.01298 1.70029 1.46319 1.16415 1.24253 0.85851 0.78477 0.79156 0.79620 1.20048 1.20086 1.20764 1.20911 0.90010 0.96695 0.95784 1.20795 0.97243 0.92523 0.97304 1.21885 0.94795 1.02620 0.90250 1.22851 0.96956 0.92909 1.01122 1.23516 0.93142 0.96742 0.92731 1.67503 1.11922 1.38299 1.01439 1.16139 1.00979 0.90095 0.88486 1.25471 0.93199 0.92277 0.92782 1.81178 1.08794 1.09651 1.12013 0.94972 0.89940 0.93841 0.88830 0.91889 0.90042 0.95061 1.01034 0.96585 0.92912 0.92621 0.92018 0.81213 0.79074 0.78083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.15 71.98 0.66 -3.87 16 2 C 0.07 2.32 2.79 44.91 0.13 2.44 16 3 C -0.17 -4.98 8.52 71.98 0.61 -4.37 16 4 N -0.54 -21.88 4.24 -880.08 -3.73 -25.61 16 5 C 0.22 11.15 3.33 85.55 0.28 11.43 16 6 C -0.52 -30.47 8.62 25.60 0.22 -30.25 16 7 H 0.06 3.71 6.71 -2.91 -0.02 3.69 16 8 C 0.01 0.65 5.46 84.66 0.46 1.11 16 9 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 10 Si 0.94 48.43 29.54 68.60 2.03 50.46 16 11 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 14 C 0.09 3.31 4.18 85.56 0.36 3.67 16 15 C -0.07 -2.00 4.49 -19.51 -0.09 -2.09 16 16 C -0.07 -1.13 8.97 22.44 0.20 -0.93 16 17 C -0.12 -1.25 10.11 22.43 0.23 -1.02 16 18 C 0.10 1.49 11.18 84.80 0.95 2.44 16 19 N -0.48 -12.69 10.28 -189.22 -1.94 -14.63 16 20 C 0.18 5.70 6.58 40.53 0.27 5.96 16 21 C 0.28 11.45 14.21 88.33 1.26 12.70 16 22 N -0.44 -20.70 17.60 19.00 0.33 -20.37 16 23 H 0.03 1.25 6.32 -2.39 -0.02 1.24 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 2.46 6.35 -2.39 -0.02 2.45 16 27 H 0.06 1.60 6.60 -2.39 -0.02 1.58 16 28 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.03 1.11 6.75 -2.39 -0.02 1.09 16 30 H -0.03 -1.53 7.33 -2.39 -0.02 -1.55 16 31 H 0.02 0.91 5.89 -2.39 -0.01 0.90 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.06 2.37 6.88 -2.39 -0.02 2.35 16 34 H 0.06 1.91 6.29 -2.39 -0.02 1.89 16 35 H 0.17 1.82 8.05 -2.91 -0.02 1.80 16 36 H 0.19 0.19 8.06 -2.91 -0.02 0.16 16 37 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -76.38 309.87 3.58 -72.80 By element: Atomic # 1 Polarization: -4.20 SS G_CDS: 1.08 Total: -3.12 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.53 Total: -2.77 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -5.06 Total: -117.38 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -76.38 3.58 -72.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061659131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.505 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds