Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.53000 * 109.47183 * 120.00125 * 2 1 3 5 5 N 1.46502 * 109.46761 * 174.53045 * 4 2 1 6 6 C 1.46494 * 120.00419 * 276.05538 * 5 4 2 7 7 C 1.50703 * 109.47448 * 274.43159 * 6 5 4 8 8 H 1.07999 * 119.99543 * 354.73472 * 7 6 5 9 9 C 1.37872 * 120.00101 * 175.00927 * 7 6 5 10 10 N 1.31523 * 120.00242 * 359.72583 * 9 7 6 11 11 Si 1.86797 * 119.99985 * 179.72259 * 9 7 6 12 12 H 1.48500 * 109.46991 * 90.00188 * 11 9 7 13 13 H 1.48510 * 109.47068 * 210.00054 * 11 9 7 14 14 H 1.48500 * 109.47221 * 329.99942 * 11 9 7 15 15 C 1.39205 * 119.99792 * 96.05783 * 5 4 2 16 16 C 1.39490 * 120.81992 * 359.72201 * 15 5 4 17 17 C 1.38148 * 119.28879 * 179.77384 * 16 15 5 18 18 N 1.31712 * 121.00279 * 0.50994 * 17 16 15 19 19 C 1.32903 * 121.80800 * 359.73828 * 18 17 16 20 20 C 1.43196 * 119.70471 * 179.97438 * 19 18 17 21 21 N 7.89433 * 161.48997 * 70.78194 * 2 1 3 22 22 C 1.39182 * 120.59127 * 0.02562 * 19 18 17 23 23 H 1.09003 * 109.47060 * 299.99540 * 1 2 3 24 24 H 1.09000 * 109.47339 * 59.99730 * 1 2 3 25 25 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47060 * 240.00460 * 2 1 3 27 27 H 1.08996 * 109.47155 * 304.98575 * 3 2 1 28 28 H 1.09008 * 109.46958 * 64.97759 * 3 2 1 29 29 H 1.08991 * 109.47216 * 184.97560 * 3 2 1 30 30 H 1.09002 * 109.46801 * 54.53521 * 4 2 1 31 31 H 1.08997 * 109.47525 * 294.53067 * 4 2 1 32 32 H 1.09003 * 109.47294 * 154.42763 * 6 5 4 33 33 H 1.09009 * 109.46855 * 34.43038 * 6 5 4 34 34 H 0.96992 * 119.99774 * 180.02562 * 10 9 7 35 35 H 1.07999 * 120.35407 * 0.02562 * 16 15 5 36 36 H 1.08001 * 119.49535 * 180.27117 * 17 16 15 37 37 H 1.07997 * 120.52563 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4991 -0.8363 1.1851 6 6 4.1151 -1.9382 0.4419 7 6 4.2155 -3.1503 1.3318 8 1 3.9355 -3.0807 2.3725 9 6 4.6700 -4.3465 0.8186 10 7 5.0109 -4.4313 -0.4488 11 14 4.8017 -5.8469 1.9236 12 1 3.5237 -6.6022 1.8871 13 1 5.9054 -6.7181 1.4458 14 1 5.0809 -5.4132 3.3161 15 6 4.3002 0.1015 1.8305 16 6 3.7319 1.1607 2.5382 17 6 4.5567 2.0706 3.1709 18 7 5.8674 1.9573 3.1065 19 6 6.4530 0.9678 2.4399 20 6 7.8822 0.8882 2.3990 21 7 9.0159 0.8250 2.3666 22 6 5.6897 0.0089 1.7805 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6056 1.9815 -0.8419 28 1 1.7513 1.9300 0.9313 29 1 3.1262 1.4438 -0.0891 30 1 1.5989 -1.7168 1.2994 31 1 1.7589 -0.1541 2.1365 32 1 5.1125 -1.6435 0.1154 33 1 3.5034 -2.1761 -0.4285 34 1 5.3304 -5.2729 -0.8098 35 1 2.6585 1.2660 2.5944 36 1 4.1202 2.8895 3.7234 37 1 6.1667 -0.7950 1.2395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061811502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = 59.338660 kcal Electronic energy + Delta-G solvation = -19057.144488 eV Core-core repulsion = 16220.385685 eV Total energy + Delta-G solvation = -2836.758803 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06160 -37.58226 -36.09027 -34.53014 -32.85628 -31.21383 -30.46693 -27.76457 -26.99691 -25.61337 -23.75018 -23.46153 -21.30172 -19.94767 -18.31441 -16.68345 -16.51473 -16.10514 -14.95835 -14.84575 -14.55641 -14.21692 -14.02872 -13.94133 -13.65194 -12.96951 -12.71482 -12.58244 -12.45629 -12.39010 -12.11735 -11.67409 -11.63804 -11.38896 -11.11641 -10.97032 -10.83595 -10.63155 -10.43637 -10.22657 -10.09225 -9.48704 -9.22336 -8.78972 -8.63191 -7.02266 -6.21666 -4.32222 1.06001 1.90648 2.87252 3.18703 3.25219 3.27134 3.30279 3.65289 4.01744 4.28734 4.38333 4.98715 5.02562 5.09650 5.10547 5.23201 5.36520 5.55155 5.59976 5.63735 5.71632 5.81440 5.93521 6.02653 6.04755 6.13006 6.17562 6.24114 6.42608 6.47415 6.53461 6.75452 6.95981 7.12038 7.63989 7.69088 7.89072 7.97520 8.08995 8.27953 8.75263 9.35744 10.82138 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.008708 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.956660 B = 3214.627536 C = 5059.081935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.125 3.875 5 N -0.586 5.586 6 C 0.244 3.756 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.273 3.727 16 C -0.250 4.250 17 C 0.139 3.861 18 N -0.516 5.516 19 C 0.213 3.787 20 C 0.283 3.717 21 N -0.414 5.414 22 C -0.186 4.186 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 9.726 2.114 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.002 3.998 5 N -0.289 5.289 6 C 0.125 3.875 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.155 3.845 16 C -0.277 4.277 17 C -0.019 4.019 18 N -0.232 5.232 19 C 0.078 3.922 20 C -0.034 4.034 21 N -0.091 5.091 22 C -0.215 4.215 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.601 9.911 2.209 12.111 hybrid contribution -0.938 -1.639 0.076 1.890 sum -7.538 8.272 2.285 11.422 Atomic orbital electron populations 1.21760 0.95107 1.01778 1.01408 1.21589 0.95352 0.96784 0.99940 1.21881 1.01500 0.95591 1.01009 1.21513 0.80489 1.01102 0.96737 1.47260 1.04059 1.25873 1.51661 1.19435 0.94009 0.82568 0.91498 1.21489 1.45051 0.94427 0.96780 0.92046 1.24947 0.94859 0.98914 0.95105 1.69914 1.43512 1.26773 1.12685 0.86515 0.77857 0.82376 0.80879 1.20512 1.21008 1.19719 1.17935 0.90104 0.87924 0.88530 1.21807 1.01327 0.98472 1.06051 1.22189 0.87673 0.96962 0.95097 1.67472 1.12893 1.22431 1.20368 1.15984 0.85398 0.93396 0.97471 1.25163 0.91923 0.93008 0.93351 1.81158 1.11760 1.08098 1.08107 1.21663 0.92742 1.01867 1.05205 0.92862 0.92841 0.92539 0.90660 0.93399 0.92795 0.92444 0.90110 0.91283 0.94630 0.94265 0.92443 0.84799 0.82834 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 2 C -0.12 -1.49 3.12 -90.62 -0.28 -1.77 16 3 C -0.14 -1.68 7.78 37.16 0.29 -1.39 16 4 C 0.13 1.83 4.90 -4.04 -0.02 1.81 16 5 N -0.59 -10.43 2.36 -172.94 -0.41 -10.84 16 6 C 0.24 5.42 5.07 -5.20 -0.03 5.39 16 7 C -0.54 -13.49 9.39 -34.44 -0.32 -13.81 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.24 13.29 55.43 0.74 -23.51 16 11 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.27 4.58 5.55 -83.63 -0.46 4.11 16 16 C -0.25 -3.41 7.82 -39.15 -0.31 -3.72 16 17 C 0.14 1.85 11.17 -17.64 -0.20 1.65 16 18 N -0.52 -8.29 10.27 -11.26 -0.12 -8.41 16 19 C 0.21 3.65 6.58 -85.13 -0.56 3.09 16 20 C 0.28 5.05 15.53 -22.48 -0.35 4.71 16 21 N -0.41 -7.84 18.54 41.84 0.78 -7.06 16 22 C -0.19 -3.33 8.96 -38.82 -0.35 -3.67 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.11 7.99 -51.93 -0.41 0.70 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.56 6.79 -51.92 -0.35 0.21 16 29 H 0.06 0.79 6.83 -51.93 -0.35 0.43 16 30 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 31 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 32 H 0.04 0.84 6.03 -51.93 -0.31 0.53 16 33 H 0.04 0.93 7.95 -51.92 -0.41 0.52 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.13 1.53 4.86 -52.49 -0.26 1.27 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.15 2.91 6.18 -52.49 -0.32 2.58 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -27.28 313.25 -6.47 -33.75 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.82 Total: -0.90 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.34 Total: -3.14 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.99 Total: -49.81 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.28 -6.47 -33.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061811502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.092 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds