Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.53000 * 109.47183 * 120.00125 * 2 1 3 5 5 N 1.46502 * 109.46761 * 174.53045 * 4 2 1 6 6 C 1.46494 * 120.00419 * 276.05538 * 5 4 2 7 7 C 1.50703 * 109.47448 * 274.43159 * 6 5 4 8 8 H 1.07999 * 119.99543 * 354.73472 * 7 6 5 9 9 C 1.37872 * 120.00101 * 175.00927 * 7 6 5 10 10 N 1.31523 * 120.00242 * 359.72583 * 9 7 6 11 11 Si 1.86797 * 119.99985 * 179.72259 * 9 7 6 12 12 H 1.48500 * 109.46991 * 90.00188 * 11 9 7 13 13 H 1.48510 * 109.47068 * 210.00054 * 11 9 7 14 14 H 1.48500 * 109.47221 * 329.99942 * 11 9 7 15 15 C 1.39205 * 119.99792 * 96.05783 * 5 4 2 16 16 C 1.39490 * 120.81992 * 359.72201 * 15 5 4 17 17 C 1.38148 * 119.28879 * 179.77384 * 16 15 5 18 18 N 1.31712 * 121.00279 * 0.50994 * 17 16 15 19 19 C 1.32903 * 121.80800 * 359.73828 * 18 17 16 20 20 C 1.43196 * 119.70471 * 179.97438 * 19 18 17 21 21 N 7.89433 * 161.48997 * 70.78194 * 2 1 3 22 22 C 1.39182 * 120.59127 * 0.02562 * 19 18 17 23 23 H 1.09003 * 109.47060 * 299.99540 * 1 2 3 24 24 H 1.09000 * 109.47339 * 59.99730 * 1 2 3 25 25 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47060 * 240.00460 * 2 1 3 27 27 H 1.08996 * 109.47155 * 304.98575 * 3 2 1 28 28 H 1.09008 * 109.46958 * 64.97759 * 3 2 1 29 29 H 1.08991 * 109.47216 * 184.97560 * 3 2 1 30 30 H 1.09002 * 109.46801 * 54.53521 * 4 2 1 31 31 H 1.08997 * 109.47525 * 294.53067 * 4 2 1 32 32 H 1.09003 * 109.47294 * 154.42763 * 6 5 4 33 33 H 1.09009 * 109.46855 * 34.43038 * 6 5 4 34 34 H 0.96992 * 119.99774 * 180.02562 * 10 9 7 35 35 H 1.07999 * 120.35407 * 0.02562 * 16 15 5 36 36 H 1.08001 * 119.49535 * 180.27117 * 17 16 15 37 37 H 1.07997 * 120.52563 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4991 -0.8363 1.1851 6 6 4.1151 -1.9382 0.4419 7 6 4.2155 -3.1503 1.3318 8 1 3.9355 -3.0807 2.3725 9 6 4.6700 -4.3465 0.8186 10 7 5.0109 -4.4313 -0.4488 11 14 4.8017 -5.8469 1.9236 12 1 3.5237 -6.6022 1.8871 13 1 5.9054 -6.7181 1.4458 14 1 5.0809 -5.4132 3.3161 15 6 4.3002 0.1015 1.8305 16 6 3.7319 1.1607 2.5382 17 6 4.5567 2.0706 3.1709 18 7 5.8674 1.9573 3.1065 19 6 6.4530 0.9678 2.4399 20 6 7.8822 0.8882 2.3990 21 7 9.0159 0.8250 2.3666 22 6 5.6897 0.0089 1.7805 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6056 1.9815 -0.8419 28 1 1.7513 1.9300 0.9313 29 1 3.1262 1.4438 -0.0891 30 1 1.5989 -1.7168 1.2994 31 1 1.7589 -0.1541 2.1365 32 1 5.1125 -1.6435 0.1154 33 1 3.5034 -2.1761 -0.4285 34 1 5.3304 -5.2729 -0.8098 35 1 2.6585 1.2660 2.5944 36 1 4.1202 2.8895 3.7234 37 1 6.1667 -0.7950 1.2395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061811502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = 45.037883 kcal Electronic energy + Delta-G solvation = -19057.764616 eV Core-core repulsion = 16220.385685 eV Total energy + Delta-G solvation = -2837.378931 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34142 -38.85989 -37.51465 -35.82069 -34.64776 -32.50452 -31.85923 -29.36680 -27.89061 -26.98821 -25.18711 -24.93421 -22.68710 -21.02987 -19.68182 -18.55923 -17.86922 -17.43684 -16.63465 -16.08530 -15.85873 -15.56104 -15.31051 -15.12857 -14.93338 -14.40651 -14.30624 -13.91745 -13.81676 -13.69937 -13.26203 -13.08729 -12.99526 -12.69346 -12.56587 -12.42197 -12.32705 -12.07117 -11.77280 -11.61153 -11.36340 -11.10773 -10.64419 -10.47944 -10.03258 -8.54263 -8.08777 -6.37678 -0.24959 0.65428 1.36657 1.39637 1.44747 1.48471 1.89161 2.25900 2.40936 2.65580 3.07126 3.10156 3.87732 3.95370 4.09647 4.17849 4.21118 4.23615 4.47876 4.54488 4.75433 4.83193 4.86755 4.90456 4.99239 5.07815 5.09527 5.14680 5.20505 5.27889 5.34534 5.53133 5.55436 5.66299 5.70589 6.04241 6.25645 6.34477 6.71294 6.79410 7.05026 7.34038 8.81830 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.011733 B = 0.008708 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.956660 B = 3214.627536 C = 5059.081935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.595 5.595 6 C 0.263 3.737 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.954 3.046 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.257 3.743 16 C -0.226 4.226 17 C 0.148 3.852 18 N -0.522 5.522 19 C 0.209 3.791 20 C 0.291 3.709 21 N -0.439 5.439 22 C -0.204 4.204 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.014 0.986 33 H 0.017 0.983 34 H 0.266 0.734 35 H 0.168 0.832 36 H 0.204 0.796 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.978 11.541 3.982 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.001 3.999 5 N -0.298 5.298 6 C 0.141 3.859 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.184 4.184 10 N -0.564 5.564 11 Si 0.780 3.220 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.195 1.195 15 C 0.141 3.859 16 C -0.252 4.252 17 C -0.009 4.009 18 N -0.238 5.238 19 C 0.073 3.927 20 C -0.025 4.025 21 N -0.116 5.116 22 C -0.234 4.234 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.185 0.815 36 H 0.220 0.780 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.783 11.754 4.097 15.235 hybrid contribution -0.300 -2.106 -0.482 2.181 sum -9.083 9.648 3.615 13.736 Atomic orbital electron populations 1.21717 0.92829 1.01921 1.02981 1.21522 0.97124 0.97014 0.97603 1.21832 0.99890 0.94861 1.02806 1.21706 0.78334 1.00952 0.98893 1.47024 1.05357 1.25337 1.52113 1.18863 0.92760 0.83412 0.90842 1.21773 1.43998 0.95465 0.96754 0.92542 1.25699 0.94840 1.01651 0.96209 1.70022 1.44806 1.27346 1.14185 0.85606 0.77981 0.79325 0.79114 1.19524 1.21137 1.19546 1.18159 0.89554 0.88858 0.89317 1.22138 1.03044 0.96404 1.03613 1.22993 0.86417 0.97498 0.94020 1.67559 1.14557 1.21693 1.20000 1.15875 0.84826 0.93849 0.98102 1.25392 0.92198 0.92285 0.92635 1.81147 1.12457 1.08955 1.09036 1.21498 0.93787 1.01868 1.06222 0.90636 0.91876 0.93191 0.93896 0.92293 0.90353 0.94833 0.91985 0.88211 0.96843 0.96537 0.92512 0.81489 0.77954 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.11 -2.73 3.12 -10.79 -0.03 -2.76 16 3 C -0.14 -2.85 7.78 71.98 0.56 -2.29 16 4 C 0.12 3.44 4.90 86.38 0.42 3.86 16 5 N -0.59 -21.26 2.36 -701.07 -1.65 -22.91 16 6 C 0.26 12.25 5.07 85.64 0.43 12.68 16 7 C -0.54 -27.88 9.39 25.60 0.24 -27.64 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.02 0.84 5.46 84.65 0.46 1.30 16 10 N -0.92 -52.08 13.29 21.45 0.28 -51.79 16 11 Si 0.95 42.41 29.54 68.60 2.03 44.43 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 C 0.26 8.39 5.55 38.54 0.21 8.61 16 16 C -0.23 -5.31 7.82 22.55 0.18 -5.13 16 17 C 0.15 3.27 11.17 84.69 0.95 4.22 16 18 N -0.52 -15.48 10.27 -189.53 -1.95 -17.43 16 19 C 0.21 7.10 6.58 40.45 0.27 7.37 16 20 C 0.29 10.57 15.53 88.33 1.37 11.94 16 21 N -0.44 -16.87 18.54 19.00 0.35 -16.51 16 22 C -0.20 -7.47 8.96 22.76 0.20 -7.26 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 1.30 7.99 -2.39 -0.02 1.29 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.23 6.79 -2.38 -0.02 1.22 16 29 H 0.03 0.86 6.83 -2.39 -0.02 0.84 16 30 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.10 2.12 5.95 -2.39 -0.01 2.11 16 32 H 0.01 0.69 6.03 -2.39 -0.01 0.68 16 33 H 0.02 0.84 7.95 -2.38 -0.02 0.82 16 34 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.17 2.82 4.86 -2.91 -0.01 2.80 16 36 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.12 5.04 6.18 -2.91 -0.02 5.02 16 Total: -1.00 -61.41 313.25 6.06 -55.35 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.08 Total: 5.80 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 5.93 Total: 3.07 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -2.96 Total: -108.65 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -61.41 6.06 -55.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061811502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.385 kcal (2) G-P(sol) polarization free energy of solvation -61.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds