Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38337 * 119.38761 * 2 1 4 4 C 1.38383 * 119.50608 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.81676 * 180.02562 * 4 3 2 6 6 C 1.39959 * 118.36043 * 359.75353 * 4 3 2 7 7 C 1.43203 * 120.60711 * 180.24805 * 6 4 3 8 8 N 4.80326 * 135.14041 * 359.74059 * 3 1 2 9 9 C 1.40543 * 118.78450 * 0.46577 * 6 4 3 10 10 N 1.38396 * 119.82920 * 179.79876 * 9 6 4 11 11 C 1.46908 * 110.99773 * 114.58949 * 10 9 6 12 12 C 1.46903 * 111.00355 * 238.54416 * 10 9 6 13 13 H 1.09003 * 109.46910 * 295.59233 * 12 10 9 14 14 C 1.52997 * 109.46658 * 55.58855 * 12 10 9 15 15 C 1.50698 * 109.47204 * 175.59132 * 12 10 9 16 16 H 1.07997 * 120.00262 * 0.02562 * 15 12 10 17 17 C 1.37877 * 119.99715 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00373 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99659 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.47074 * 90.00518 * 19 17 15 21 21 H 1.48501 * 109.47345 * 210.00129 * 19 17 15 22 22 H 1.48502 * 109.47679 * 330.00401 * 19 17 15 23 23 N 1.31877 * 119.39646 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46698 * 270.01846 * 1 2 3 25 25 H 1.08997 * 109.47632 * 30.02164 * 1 2 3 26 26 H 1.09002 * 109.46950 * 150.02336 * 1 2 3 27 27 H 1.07997 * 120.24751 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.47062 * 90.00322 * 5 4 3 29 29 H 1.08999 * 109.46680 * 210.00059 * 5 4 3 30 30 H 1.08998 * 109.47332 * 330.00042 * 5 4 3 31 31 H 1.08996 * 109.47097 * 65.63846 * 11 10 9 32 32 H 1.09001 * 109.46590 * 185.63132 * 11 10 9 33 33 H 1.08995 * 109.47038 * 305.63387 * 11 10 9 34 34 H 1.08997 * 109.47610 * 295.73857 * 14 12 10 35 35 H 1.08996 * 109.47287 * 55.74041 * 14 12 10 36 36 H 1.09008 * 109.46911 * 175.73564 * 14 12 10 37 37 H 0.96996 * 120.00306 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2054 0.0000 4 6 3.5696 1.2082 0.0005 5 6 4.3390 2.5041 0.0011 6 6 4.2370 -0.0220 0.0064 7 6 5.6680 -0.0752 0.0125 8 7 6.8033 -0.1174 0.0153 9 6 3.4770 -1.2042 0.0014 10 7 4.1147 -2.4325 0.0028 11 6 3.8450 -3.1643 1.2478 12 6 3.7275 -3.2281 -1.1699 13 1 2.6638 -3.4600 -1.1164 14 6 4.0121 -2.4302 -2.4439 15 6 4.5205 -4.5094 -1.1918 16 1 5.2399 -4.7126 -0.4123 17 6 4.3269 -5.4226 -2.2064 18 7 3.4505 -5.1755 -3.1553 19 14 5.3104 -7.0105 -2.2339 20 1 4.5755 -8.0610 -1.4845 21 1 5.5037 -7.4488 -3.6395 22 1 6.6339 -6.7842 -1.5996 23 7 2.1543 -1.1490 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6399 2.1372 -0.0004 28 1 4.5242 2.8162 1.0289 29 1 5.2899 2.3622 -0.5124 30 1 3.7595 3.2710 -0.5127 31 1 2.7855 -3.4150 1.2996 32 1 4.4363 -4.0797 1.2664 33 1 4.1131 -2.5410 2.1008 34 1 3.3823 -1.5408 -2.4640 35 1 5.0607 -2.1333 -2.4600 36 1 3.7961 -3.0482 -3.3155 37 1 3.3146 -5.8178 -3.8693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = 70.059010 kcal Electronic energy + Delta-G solvation = -19424.812133 eV Core-core repulsion = 16588.518199 eV Total energy + Delta-G solvation = -2836.293933 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54571 -36.99438 -36.22293 -33.86729 -33.12411 -31.29416 -29.24489 -28.43587 -27.47614 -25.71438 -24.46798 -22.35369 -21.62149 -19.62310 -18.55467 -16.91883 -16.22882 -15.60757 -15.10837 -14.49820 -14.25813 -13.74455 -13.49082 -13.42644 -13.25266 -12.86112 -12.74742 -12.56648 -12.33176 -12.19731 -12.15597 -11.97877 -11.72909 -11.44035 -11.11518 -10.87955 -10.76160 -10.26006 -10.19467 -10.06376 -9.45276 -9.31736 -9.00036 -8.48850 -8.45975 -7.63979 -6.03761 -4.09007 0.85456 1.33947 3.15471 3.30434 3.32865 3.37086 3.41920 4.06403 4.15992 4.27046 4.45893 4.59398 4.66880 5.16826 5.19817 5.28988 5.35866 5.41955 5.49095 5.62975 5.67324 5.81328 6.01662 6.03646 6.09184 6.20738 6.34525 6.57982 6.66661 6.76545 6.99849 7.03458 7.39396 7.65213 7.77247 7.94552 7.99896 8.18442 8.27454 8.49533 8.95313 9.55488 11.02976 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.006632 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.220557 B = 4220.764140 C = 4831.456165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.199 4.199 4 C 0.007 3.993 5 C -0.120 4.120 6 C -0.082 4.082 7 C 0.284 3.716 8 N -0.425 5.425 9 C 0.387 3.613 10 N -0.502 5.502 11 C 0.047 3.953 12 C 0.222 3.778 13 H 0.023 0.977 14 C -0.135 4.135 15 C -0.506 4.506 16 H 0.064 0.936 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.510 5.510 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.003 0.997 35 H 0.031 0.969 36 H 0.093 0.907 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 13.566 6.489 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.219 4.219 4 C -0.003 4.003 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.031 4.031 8 N -0.101 5.101 9 C 0.156 3.844 10 N -0.226 5.226 11 C -0.100 4.100 12 C 0.118 3.882 13 H 0.041 0.959 14 C -0.193 4.193 15 C -0.545 4.545 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.223 5.223 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.157 0.843 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.113 12.679 6.286 14.737 hybrid contribution -0.304 -0.346 -0.177 0.494 sum -4.416 12.332 6.109 14.454 Atomic orbital electron populations 1.20786 0.88860 1.03738 1.03059 1.21373 0.97029 0.88031 0.90777 1.21591 0.93217 0.99359 1.07714 1.20216 0.93855 0.93780 0.92438 1.20887 1.00133 0.93406 1.03224 1.16694 0.86055 0.93657 1.12564 1.24909 0.91903 0.92760 0.93564 1.81125 1.11928 1.08111 1.08911 1.20212 0.85886 0.92084 0.86216 1.60433 1.54028 1.01867 1.06306 1.22168 1.00367 0.98572 0.88886 1.19391 0.95825 0.90126 0.82840 0.95926 1.21854 0.97922 0.97213 1.02335 1.21081 1.22310 1.01146 1.09947 0.91757 1.24897 0.95374 0.98434 0.95324 1.69883 1.34402 1.35797 1.12903 0.86487 0.80468 0.83203 0.77223 1.20652 1.21209 1.19812 1.67985 1.10019 1.29300 1.14979 0.90258 0.90653 0.90048 0.84333 0.90022 0.91036 0.90272 0.94671 0.89683 0.93780 0.97809 0.95021 0.88853 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.16 36.00 0.37 -0.75 16 2 C 0.17 2.39 6.78 -82.54 -0.56 1.83 16 3 C -0.20 -2.36 9.41 -39.49 -0.37 -2.74 16 4 C 0.01 0.10 5.95 -103.92 -0.62 -0.52 16 5 C -0.12 -1.18 9.67 36.01 0.35 -0.83 16 6 C -0.08 -1.43 5.77 -106.46 -0.61 -2.04 16 7 C 0.28 5.34 13.46 -22.47 -0.30 5.04 16 8 N -0.43 -8.55 18.54 41.84 0.78 -7.77 16 9 C 0.39 7.63 3.78 -155.08 -0.59 7.05 16 10 N -0.50 -11.22 3.98 -174.50 -0.70 -11.92 16 11 C 0.05 0.94 9.11 60.07 0.55 1.49 16 12 C 0.22 5.70 1.86 -68.87 -0.13 5.57 16 13 H 0.02 0.65 7.94 -51.93 -0.41 0.24 16 14 C -0.14 -3.44 8.72 37.16 0.32 -3.12 16 15 C -0.51 -13.95 7.96 -34.44 -0.27 -14.23 16 16 H 0.06 1.77 6.70 -52.49 -0.35 1.42 16 17 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 18 N -0.89 -25.43 11.30 55.43 0.63 -24.81 16 19 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 N -0.51 -9.42 9.58 -8.41 -0.08 -9.50 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.79 7.20 -51.93 -0.37 0.41 16 30 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.08 1.75 6.55 -51.93 -0.34 1.41 16 33 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.00 0.07 7.28 -51.93 -0.38 -0.31 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 2.58 5.97 -51.92 -0.31 2.27 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -31.14 315.09 -6.70 -37.84 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -5.09 Total: -3.41 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.96 Total: -1.66 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.63 Total: -54.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.14 -6.70 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.903 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds