Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38337 * 119.38761 * 2 1 4 4 C 1.38383 * 119.50608 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.81676 * 180.02562 * 4 3 2 6 6 C 1.39959 * 118.36043 * 359.75353 * 4 3 2 7 7 C 1.43203 * 120.60711 * 180.24805 * 6 4 3 8 8 N 4.80326 * 135.14041 * 359.74059 * 3 1 2 9 9 C 1.40543 * 118.78450 * 0.46577 * 6 4 3 10 10 N 1.38396 * 119.82920 * 179.79876 * 9 6 4 11 11 C 1.46908 * 110.99773 * 114.58949 * 10 9 6 12 12 C 1.46903 * 111.00355 * 238.54416 * 10 9 6 13 13 H 1.09003 * 109.46910 * 295.59233 * 12 10 9 14 14 C 1.52997 * 109.46658 * 55.58855 * 12 10 9 15 15 C 1.50698 * 109.47204 * 175.59132 * 12 10 9 16 16 H 1.07997 * 120.00262 * 0.02562 * 15 12 10 17 17 C 1.37877 * 119.99715 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00373 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 119.99659 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.47074 * 90.00518 * 19 17 15 21 21 H 1.48501 * 109.47345 * 210.00129 * 19 17 15 22 22 H 1.48502 * 109.47679 * 330.00401 * 19 17 15 23 23 N 1.31877 * 119.39646 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46698 * 270.01846 * 1 2 3 25 25 H 1.08997 * 109.47632 * 30.02164 * 1 2 3 26 26 H 1.09002 * 109.46950 * 150.02336 * 1 2 3 27 27 H 1.07997 * 120.24751 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.47062 * 90.00322 * 5 4 3 29 29 H 1.08999 * 109.46680 * 210.00059 * 5 4 3 30 30 H 1.08998 * 109.47332 * 330.00042 * 5 4 3 31 31 H 1.08996 * 109.47097 * 65.63846 * 11 10 9 32 32 H 1.09001 * 109.46590 * 185.63132 * 11 10 9 33 33 H 1.08995 * 109.47038 * 305.63387 * 11 10 9 34 34 H 1.08997 * 109.47610 * 295.73857 * 14 12 10 35 35 H 1.08996 * 109.47287 * 55.74041 * 14 12 10 36 36 H 1.09008 * 109.46911 * 175.73564 * 14 12 10 37 37 H 0.96996 * 120.00306 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.2054 0.0000 4 6 3.5696 1.2082 0.0005 5 6 4.3390 2.5041 0.0011 6 6 4.2370 -0.0220 0.0064 7 6 5.6680 -0.0752 0.0125 8 7 6.8033 -0.1174 0.0153 9 6 3.4770 -1.2042 0.0014 10 7 4.1147 -2.4325 0.0028 11 6 3.8450 -3.1643 1.2478 12 6 3.7275 -3.2281 -1.1699 13 1 2.6638 -3.4600 -1.1164 14 6 4.0121 -2.4302 -2.4439 15 6 4.5205 -4.5094 -1.1918 16 1 5.2399 -4.7126 -0.4123 17 6 4.3269 -5.4226 -2.2064 18 7 3.4505 -5.1755 -3.1553 19 14 5.3104 -7.0105 -2.2339 20 1 4.5755 -8.0610 -1.4845 21 1 5.5037 -7.4488 -3.6395 22 1 6.6339 -6.7842 -1.5996 23 7 2.1543 -1.1490 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6399 2.1372 -0.0004 28 1 4.5242 2.8162 1.0289 29 1 5.2899 2.3622 -0.5124 30 1 3.7595 3.2710 -0.5127 31 1 2.7855 -3.4150 1.2996 32 1 4.4363 -4.0797 1.2664 33 1 4.1131 -2.5410 2.1008 34 1 3.3823 -1.5408 -2.4640 35 1 5.0607 -2.1333 -2.4600 36 1 3.7961 -3.0482 -3.3155 37 1 3.3146 -5.8178 -3.8693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = 50.747711 kcal Electronic energy + Delta-G solvation = -19425.649534 eV Core-core repulsion = 16588.518199 eV Total energy + Delta-G solvation = -2837.131334 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82063 -38.58035 -37.64849 -35.16346 -34.89097 -32.68391 -31.18539 -29.53917 -28.36355 -27.60261 -26.26515 -23.91023 -22.86096 -21.21411 -19.84700 -18.50210 -17.93549 -17.29943 -16.68712 -16.09780 -15.38944 -15.29912 -14.99347 -14.63794 -14.53769 -14.14478 -13.99309 -13.93047 -13.77464 -13.49996 -13.43635 -13.15097 -13.06946 -12.90471 -12.74897 -12.67321 -12.55097 -12.22729 -12.16950 -11.99150 -11.17446 -10.59229 -10.57691 -10.44119 -9.69964 -9.39518 -8.16072 -6.28577 -0.37135 0.20412 1.39696 1.41063 1.51781 1.71103 2.00112 2.38007 2.78460 2.86604 2.94863 3.13674 3.50782 3.66857 3.96985 4.19163 4.39074 4.44615 4.59300 4.62446 4.69199 4.72562 4.76056 4.86972 4.88054 4.93414 5.03523 5.07705 5.09364 5.18806 5.26921 5.37245 5.58577 5.62773 5.75968 6.09020 6.17064 6.50451 6.68780 6.81150 7.01597 7.39844 8.90327 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.006632 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.220557 B = 4220.764140 C = 4831.456165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.157 3.843 3 C -0.174 4.174 4 C 0.017 3.983 5 C -0.118 4.118 6 C -0.104 4.104 7 C 0.296 3.704 8 N -0.461 5.461 9 C 0.355 3.645 10 N -0.513 5.513 11 C 0.053 3.947 12 C 0.235 3.765 13 H -0.013 1.013 14 C -0.115 4.115 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.273 1.273 23 N -0.545 5.545 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.193 0.807 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.014 0.986 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 15.944 7.101 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.017 3.983 3 C -0.193 4.193 4 C 0.007 3.993 5 C -0.174 4.174 6 C -0.111 4.111 7 C -0.018 4.018 8 N -0.138 5.138 9 C 0.125 3.875 10 N -0.237 5.237 11 C -0.094 4.094 12 C 0.130 3.870 13 H 0.005 0.995 14 C -0.173 4.173 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.198 1.198 23 N -0.259 5.259 24 H 0.117 0.883 25 H 0.130 0.870 26 H 0.079 0.921 27 H 0.210 0.790 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.205 15.077 6.914 17.384 hybrid contribution -0.106 -0.947 -0.325 1.007 sum -5.310 14.130 6.589 16.470 Atomic orbital electron populations 1.20914 0.86164 1.04519 1.04502 1.22133 0.98831 0.87752 0.89544 1.22122 0.92573 1.00460 1.04145 1.20684 0.94753 0.93542 0.90371 1.21014 0.99442 0.92213 1.04750 1.16862 0.85098 0.94700 1.14486 1.25254 0.92304 0.91751 0.92520 1.81112 1.12917 1.09252 1.10498 1.20068 0.86836 0.91254 0.89379 1.60238 1.55104 1.02763 1.05593 1.22100 0.99553 0.98461 0.89248 1.18984 0.93290 0.90212 0.84501 0.99512 1.21590 0.97220 0.97063 1.01447 1.21351 1.22477 1.02469 1.09994 0.92391 1.25676 0.96270 1.01496 0.94919 1.70000 1.35469 1.36832 1.13339 0.85503 0.78962 0.79475 0.77377 1.19671 1.20647 1.19776 1.67885 1.09553 1.32013 1.16449 0.88335 0.86961 0.92136 0.79022 0.88044 0.92603 0.86720 0.95447 0.91050 0.91427 0.96672 0.96073 0.91225 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.16 71.24 0.72 -1.11 16 2 C 0.16 4.05 6.78 42.57 0.29 4.34 16 3 C -0.17 -3.33 9.41 22.33 0.21 -3.12 16 4 C 0.02 0.39 5.95 -19.41 -0.12 0.27 16 5 C -0.12 -1.84 9.67 71.24 0.69 -1.15 16 6 C -0.10 -3.53 5.77 -21.05 -0.12 -3.65 16 7 C 0.30 11.18 13.46 88.33 1.19 12.37 16 8 N -0.46 -18.82 18.54 19.01 0.35 -18.46 16 9 C 0.36 14.11 3.78 133.62 0.51 14.62 16 10 N -0.51 -23.71 3.98 -705.98 -2.81 -26.52 16 11 C 0.05 2.21 9.11 127.69 1.16 3.37 16 12 C 0.24 12.59 1.86 44.17 0.08 12.67 16 13 H -0.01 -0.76 7.94 -2.39 -0.02 -0.78 16 14 C -0.11 -6.07 8.72 71.98 0.63 -5.44 16 15 C -0.52 -29.93 7.96 25.60 0.20 -29.73 16 16 H 0.06 3.30 6.70 -2.91 -0.02 3.28 16 17 C 0.02 0.88 5.29 84.65 0.45 1.33 16 18 N -0.92 -53.71 11.30 21.45 0.24 -53.47 16 19 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 N -0.54 -20.03 9.58 -180.52 -1.73 -21.76 16 24 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.11 1.16 8.07 -2.39 -0.02 1.14 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.09 7.20 -2.39 -0.02 1.07 16 30 H 0.11 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.03 1.14 8.07 -2.39 -0.02 1.12 16 32 H 0.07 3.08 6.55 -2.39 -0.02 3.07 16 33 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 34 H 0.01 0.71 7.28 -2.39 -0.02 0.69 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 3.99 5.97 -2.38 -0.01 3.97 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -71.63 315.09 5.04 -66.59 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.07 Total: 2.02 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.89 Total: 4.77 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -3.95 Total: -120.21 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.63 5.04 -66.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.334 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds