Wall clock time and date at job start Mon Mar 30 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38328 * 119.38875 * 2 1 4 4 C 1.38377 * 119.50253 * 180.25687 * 3 2 1 5 5 C 1.50707 * 120.82014 * 179.72474 * 4 3 2 6 6 C 1.39962 * 118.36472 * 359.45192 * 4 3 2 7 7 C 1.43201 * 120.61333 * 180.30173 * 6 4 3 8 8 N 4.80319 * 135.14066 * 359.94430 * 3 1 2 9 9 C 1.40547 * 118.77954 * 0.27678 * 6 4 3 10 10 N 1.38397 * 119.82494 * 180.02562 * 9 6 4 11 11 C 1.46901 * 111.00097 * 137.18322 * 10 9 6 12 12 C 1.46904 * 111.00055 * 261.13085 * 10 9 6 13 13 H 1.09006 * 109.46630 * 54.99955 * 12 10 9 14 14 C 1.52999 * 109.47281 * 295.00488 * 12 10 9 15 15 C 1.50698 * 109.47615 * 174.99829 * 12 10 9 16 16 H 1.08006 * 119.99521 * 0.02562 * 15 12 10 17 17 C 1.37869 * 120.00149 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00178 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 120.00097 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47336 * 59.99674 * 19 17 15 21 21 H 1.48498 * 109.47229 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46822 * 299.99896 * 19 17 15 23 23 N 1.31886 * 119.38726 * 179.69542 * 2 1 3 24 24 H 1.09001 * 109.47078 * 270.30119 * 1 2 3 25 25 H 1.08993 * 109.46550 * 30.29917 * 1 2 3 26 26 H 1.08999 * 109.46813 * 150.30084 * 1 2 3 27 27 H 1.07996 * 120.25287 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.46844 * 269.72264 * 5 4 3 29 29 H 1.09002 * 109.46760 * 29.71903 * 5 4 3 30 30 H 1.09000 * 109.47109 * 149.71684 * 5 4 3 31 31 H 1.09002 * 109.47245 * 52.72585 * 11 10 9 32 32 H 1.09007 * 109.47271 * 172.72752 * 11 10 9 33 33 H 1.09001 * 109.47077 * 292.72329 * 11 10 9 34 34 H 1.09001 * 109.47374 * 179.97438 * 14 12 10 35 35 H 1.08999 * 109.47142 * 299.99628 * 14 12 10 36 36 H 1.09000 * 109.47242 * 59.99282 * 14 12 10 37 37 H 0.97007 * 119.99937 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1859 1.2053 0.0000 4 6 3.5697 1.2080 -0.0054 5 6 4.3392 2.5038 -0.0118 6 6 4.2371 -0.0222 0.0011 7 6 5.6681 -0.0755 0.0024 8 7 6.8033 -0.1177 0.0033 9 6 3.4770 -1.2044 0.0068 10 7 4.1146 -2.4327 0.0138 11 6 3.4636 -3.3585 0.9503 12 6 4.1705 -3.0045 -1.3382 13 1 4.6403 -2.2911 -2.0153 14 6 2.7514 -3.3086 -1.8225 15 6 4.9761 -4.2779 -1.3123 16 1 5.4034 -4.6276 -0.3841 17 6 5.1675 -4.9963 -2.4733 18 7 4.6475 -4.5701 -3.6036 19 14 6.1655 -6.5751 -2.4410 20 1 5.5247 -7.5471 -1.5193 21 1 6.2231 -7.1524 -3.8080 22 1 7.5428 -6.2805 -1.9702 23 7 2.1543 -1.1491 0.0061 24 1 -0.3633 0.0054 1.0277 25 1 -0.3632 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5092 27 1 1.6401 2.1371 -0.0004 28 1 4.5250 2.8109 -1.0409 29 1 3.7593 3.2732 0.4980 30 1 5.2898 2.3644 0.5031 31 1 2.3967 -3.4056 0.7321 32 1 3.9007 -4.3513 0.8427 33 1 3.6105 -3.0056 1.9711 34 1 2.7928 -3.7325 -2.8258 35 1 2.2815 -4.0220 -1.1455 36 1 2.1687 -2.3876 -1.8413 37 1 4.7825 -5.0755 -4.4206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:44 Heat of formation + Delta-G solvation = 74.231913 kcal Electronic energy + Delta-G solvation = -19459.334361 eV Core-core repulsion = 16623.221378 eV Total energy + Delta-G solvation = -2836.112983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56063 -37.16699 -36.17252 -33.83913 -33.11093 -31.33099 -28.76935 -28.40968 -27.44367 -25.47974 -25.12394 -22.56133 -21.33210 -19.56914 -18.49427 -16.89476 -16.32185 -15.63536 -15.07773 -14.49006 -14.23813 -13.73013 -13.52947 -13.39797 -13.12850 -12.82942 -12.68207 -12.63772 -12.22535 -12.19147 -12.10957 -11.76837 -11.65497 -11.30939 -11.18295 -10.83364 -10.77505 -10.70981 -10.14064 -10.05843 -9.45923 -9.28482 -8.85577 -8.58798 -8.40743 -7.57740 -6.05852 -4.10985 0.89077 1.37074 3.22065 3.31913 3.35732 3.36104 3.39741 4.08457 4.20337 4.30742 4.45366 4.60656 4.68759 5.19651 5.22843 5.26862 5.37057 5.47417 5.49676 5.61856 5.68924 5.83841 6.03433 6.07583 6.14456 6.25147 6.43823 6.60861 6.69678 6.86581 6.96156 7.05376 7.43871 7.59697 7.75669 7.90127 8.00815 8.20248 8.30402 8.45989 8.91670 9.53539 11.01065 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.006751 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.419050 B = 4146.778286 C = 4811.443815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.203 4.203 4 C 0.011 3.989 5 C -0.120 4.120 6 C -0.085 4.085 7 C 0.280 3.720 8 N -0.421 5.421 9 C 0.382 3.618 10 N -0.495 5.495 11 C 0.035 3.965 12 C 0.222 3.778 13 H 0.038 0.962 14 C -0.165 4.165 15 C -0.506 4.506 16 H 0.065 0.935 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.507 5.507 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.138 0.862 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 11.955 6.771 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.223 4.223 4 C 0.000 4.000 5 C -0.177 4.177 6 C -0.093 4.093 7 C -0.035 4.035 8 N -0.097 5.097 9 C 0.150 3.850 10 N -0.216 5.216 11 C -0.112 4.112 12 C 0.119 3.881 13 H 0.056 0.944 14 C -0.224 4.224 15 C -0.545 4.545 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.221 5.221 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.857 11.079 6.721 14.660 hybrid contribution -0.215 -0.319 -0.391 0.549 sum -7.073 10.759 6.330 14.348 Atomic orbital electron populations 1.20768 0.88925 1.03612 1.02998 1.21358 0.96940 0.88118 0.90933 1.21540 0.93194 0.99302 1.08269 1.20189 0.93828 0.93733 0.92219 1.20889 1.00012 0.93368 1.03399 1.16587 0.86031 0.93566 1.13139 1.24909 0.91924 0.92994 0.93696 1.81125 1.11949 1.07850 1.08788 1.20237 0.86117 0.91980 0.86688 1.60377 1.47360 1.00747 1.13156 1.22258 0.98272 0.97325 0.93340 1.19408 0.93809 0.94808 0.80062 0.94445 1.22371 0.97281 0.98709 1.04010 1.20986 1.32220 1.06243 0.95033 0.91682 1.24894 0.95774 0.98022 0.95277 1.69884 1.44638 1.39357 0.99100 0.86522 0.80692 0.83001 0.77013 1.20161 1.21272 1.20167 1.68029 1.09592 1.28974 1.15543 0.90289 0.90719 0.90207 0.84447 0.89910 0.90365 0.91078 0.93538 0.89659 0.93839 0.89533 0.94701 0.95953 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.16 36.01 0.37 -0.68 16 2 C 0.17 2.30 6.78 -82.53 -0.56 1.75 16 3 C -0.20 -2.40 9.41 -39.50 -0.37 -2.78 16 4 C 0.01 0.14 5.95 -103.92 -0.62 -0.48 16 5 C -0.12 -1.22 9.68 36.01 0.35 -0.87 16 6 C -0.09 -1.51 5.77 -106.45 -0.61 -2.13 16 7 C 0.28 5.48 13.45 -22.47 -0.30 5.18 16 8 N -0.42 -8.87 18.54 41.84 0.78 -8.09 16 9 C 0.38 7.49 5.12 -155.08 -0.79 6.70 16 10 N -0.49 -11.02 4.10 -174.49 -0.72 -11.73 16 11 C 0.04 0.71 8.50 60.07 0.51 1.22 16 12 C 0.22 5.67 2.31 -68.86 -0.16 5.51 16 13 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 14 C -0.16 -4.02 8.09 37.16 0.30 -3.72 16 15 C -0.51 -13.92 7.78 -34.44 -0.27 -14.19 16 16 H 0.07 1.78 6.83 -52.48 -0.36 1.42 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 N -0.51 -8.99 7.03 -8.41 -0.06 -9.05 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.07 0.78 7.19 -51.93 -0.37 0.41 16 31 H 0.05 0.92 6.13 -51.93 -0.32 0.60 16 32 H 0.08 1.80 6.26 -51.93 -0.32 1.48 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 35 H 0.03 0.82 6.65 -51.93 -0.35 0.48 16 36 H 0.02 0.50 6.18 -51.93 -0.32 0.18 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -30.77 308.69 -6.86 -37.63 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.87 Total: -2.24 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.26 Total: -2.87 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.63 Total: -53.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.77 -6.86 -37.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.866 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds