Wall clock time and date at job start Mon Mar 30 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38328 * 119.38875 * 2 1 4 4 C 1.38377 * 119.50253 * 180.25687 * 3 2 1 5 5 C 1.50707 * 120.82014 * 179.72474 * 4 3 2 6 6 C 1.39962 * 118.36472 * 359.45192 * 4 3 2 7 7 C 1.43201 * 120.61333 * 180.30173 * 6 4 3 8 8 N 4.80319 * 135.14066 * 359.94430 * 3 1 2 9 9 C 1.40547 * 118.77954 * 0.27678 * 6 4 3 10 10 N 1.38397 * 119.82494 * 180.02562 * 9 6 4 11 11 C 1.46901 * 111.00097 * 137.18322 * 10 9 6 12 12 C 1.46904 * 111.00055 * 261.13085 * 10 9 6 13 13 H 1.09006 * 109.46630 * 54.99955 * 12 10 9 14 14 C 1.52999 * 109.47281 * 295.00488 * 12 10 9 15 15 C 1.50698 * 109.47615 * 174.99829 * 12 10 9 16 16 H 1.08006 * 119.99521 * 0.02562 * 15 12 10 17 17 C 1.37869 * 120.00149 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00178 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 120.00097 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47336 * 59.99674 * 19 17 15 21 21 H 1.48498 * 109.47229 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46822 * 299.99896 * 19 17 15 23 23 N 1.31886 * 119.38726 * 179.69542 * 2 1 3 24 24 H 1.09001 * 109.47078 * 270.30119 * 1 2 3 25 25 H 1.08993 * 109.46550 * 30.29917 * 1 2 3 26 26 H 1.08999 * 109.46813 * 150.30084 * 1 2 3 27 27 H 1.07996 * 120.25287 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.46844 * 269.72264 * 5 4 3 29 29 H 1.09002 * 109.46760 * 29.71903 * 5 4 3 30 30 H 1.09000 * 109.47109 * 149.71684 * 5 4 3 31 31 H 1.09002 * 109.47245 * 52.72585 * 11 10 9 32 32 H 1.09007 * 109.47271 * 172.72752 * 11 10 9 33 33 H 1.09001 * 109.47077 * 292.72329 * 11 10 9 34 34 H 1.09001 * 109.47374 * 179.97438 * 14 12 10 35 35 H 1.08999 * 109.47142 * 299.99628 * 14 12 10 36 36 H 1.09000 * 109.47242 * 59.99282 * 14 12 10 37 37 H 0.97007 * 119.99937 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1859 1.2053 0.0000 4 6 3.5697 1.2080 -0.0054 5 6 4.3392 2.5038 -0.0118 6 6 4.2371 -0.0222 0.0011 7 6 5.6681 -0.0755 0.0024 8 7 6.8033 -0.1177 0.0033 9 6 3.4770 -1.2044 0.0068 10 7 4.1146 -2.4327 0.0138 11 6 3.4636 -3.3585 0.9503 12 6 4.1705 -3.0045 -1.3382 13 1 4.6403 -2.2911 -2.0153 14 6 2.7514 -3.3086 -1.8225 15 6 4.9761 -4.2779 -1.3123 16 1 5.4034 -4.6276 -0.3841 17 6 5.1675 -4.9963 -2.4733 18 7 4.6475 -4.5701 -3.6036 19 14 6.1655 -6.5751 -2.4410 20 1 5.5247 -7.5471 -1.5193 21 1 6.2231 -7.1524 -3.8080 22 1 7.5428 -6.2805 -1.9702 23 7 2.1543 -1.1491 0.0061 24 1 -0.3633 0.0054 1.0277 25 1 -0.3632 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5092 27 1 1.6401 2.1371 -0.0004 28 1 4.5250 2.8109 -1.0409 29 1 3.7593 3.2732 0.4980 30 1 5.2898 2.3644 0.5031 31 1 2.3967 -3.4056 0.7321 32 1 3.9007 -4.3513 0.8427 33 1 3.6105 -3.0056 1.9711 34 1 2.7928 -3.7325 -2.8258 35 1 2.2815 -4.0220 -1.1455 36 1 2.1687 -2.3876 -1.8413 37 1 4.7825 -5.0755 -4.4206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:43 Heat of formation + Delta-G solvation = 55.805829 kcal Electronic energy + Delta-G solvation = -19460.133376 eV Core-core repulsion = 16623.221378 eV Total energy + Delta-G solvation = -2836.911998 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84654 -38.74647 -37.65279 -35.14700 -34.85887 -32.75638 -30.57223 -29.58165 -28.33915 -27.38037 -26.88472 -24.04759 -22.56728 -21.21882 -19.78874 -18.37484 -18.13599 -17.29584 -16.70738 -16.04270 -15.45126 -15.23330 -14.88806 -14.56873 -14.49091 -14.23375 -14.00784 -13.89545 -13.69352 -13.46998 -13.20326 -13.15015 -13.08188 -12.84111 -12.74180 -12.63184 -12.59222 -12.48568 -12.08045 -11.97179 -11.17039 -10.61613 -10.49986 -10.35190 -9.87951 -9.18289 -8.17699 -6.30042 -0.34811 0.21926 1.39045 1.41544 1.48810 1.71411 2.00630 2.37032 2.77198 2.92068 2.96137 3.11901 3.51801 3.68306 3.99317 4.21156 4.40925 4.50975 4.62002 4.68811 4.71589 4.76290 4.78549 4.91004 4.97875 5.01621 5.07406 5.11031 5.16001 5.20973 5.28483 5.44708 5.60433 5.65915 5.72504 6.04146 6.22573 6.50916 6.67896 6.78407 7.01818 7.38272 8.88451 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.006751 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.419050 B = 4146.778286 C = 4811.443815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.159 3.841 3 C -0.178 4.178 4 C 0.018 3.982 5 C -0.119 4.119 6 C -0.113 4.113 7 C 0.293 3.707 8 N -0.465 5.465 9 C 0.351 3.649 10 N -0.511 5.511 11 C 0.045 3.955 12 C 0.234 3.766 13 H -0.006 1.006 14 C -0.142 4.142 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.278 1.278 23 N -0.532 5.532 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.191 0.809 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 13.940 7.599 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.019 3.981 3 C -0.197 4.197 4 C 0.008 3.992 5 C -0.175 4.175 6 C -0.121 4.121 7 C -0.021 4.021 8 N -0.141 5.141 9 C 0.120 3.880 10 N -0.232 5.232 11 C -0.102 4.102 12 C 0.129 3.871 13 H 0.012 0.988 14 C -0.201 4.201 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.787 3.213 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.204 1.204 23 N -0.246 5.246 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.083 0.917 27 H 0.208 0.792 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.827 13.083 7.569 17.504 hybrid contribution 0.254 -0.772 -0.613 1.018 sum -8.573 12.311 6.957 16.536 Atomic orbital electron populations 1.20905 0.85872 1.04599 1.04558 1.22168 0.98886 0.87743 0.89324 1.22089 0.92377 1.00636 1.04613 1.20642 0.94866 0.93339 0.90364 1.21008 0.99613 0.92474 1.04384 1.16856 0.84916 0.94982 1.15323 1.25374 0.92499 0.91802 0.92469 1.81101 1.13147 1.09214 1.10677 1.20109 0.87265 0.91080 0.89569 1.60146 1.49425 1.02131 1.11527 1.22161 0.97835 0.96258 0.93975 1.19000 0.93452 0.93030 0.81574 0.98803 1.22091 0.97059 0.98922 1.02066 1.21270 1.32673 1.07279 0.94966 0.92303 1.25679 0.96717 1.01059 0.94915 1.70012 1.45563 1.40510 0.99546 0.85560 0.78937 0.79482 0.77370 1.18972 1.20573 1.20392 1.67932 1.08613 1.31424 1.16623 0.88282 0.87242 0.91688 0.79176 0.88897 0.86357 0.92449 0.93492 0.91418 0.91903 0.92308 0.94662 0.94744 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.16 71.24 0.72 -0.88 16 2 C 0.16 3.86 6.78 42.57 0.29 4.15 16 3 C -0.18 -3.38 9.41 22.32 0.21 -3.17 16 4 C 0.02 0.43 5.95 -19.41 -0.12 0.32 16 5 C -0.12 -2.00 9.68 71.24 0.69 -1.31 16 6 C -0.11 -3.98 5.77 -21.05 -0.12 -4.10 16 7 C 0.29 11.79 13.45 88.33 1.19 12.97 16 8 N -0.46 -20.33 18.54 19.00 0.35 -19.98 16 9 C 0.35 13.88 5.12 133.62 0.68 14.56 16 10 N -0.51 -23.49 4.10 -705.97 -2.90 -26.39 16 11 C 0.04 1.84 8.50 127.69 1.09 2.93 16 12 C 0.23 12.48 2.31 44.17 0.10 12.58 16 13 H -0.01 -0.36 8.11 -2.38 -0.02 -0.38 16 14 C -0.14 -7.16 8.09 71.98 0.58 -6.58 16 15 C -0.52 -29.87 7.78 25.60 0.20 -29.67 16 16 H 0.06 3.35 6.83 -2.91 -0.02 3.33 16 17 C 0.02 0.88 5.30 84.65 0.45 1.33 16 18 N -0.92 -53.90 11.32 21.44 0.24 -53.65 16 19 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 23 N -0.53 -18.29 7.03 -180.51 -1.27 -19.56 16 24 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.11 0.99 8.07 -2.39 -0.02 0.97 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.12 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.06 1.16 7.19 -2.39 -0.02 1.15 16 31 H 0.05 1.88 6.13 -2.39 -0.01 1.86 16 32 H 0.07 2.96 6.26 -2.38 -0.01 2.94 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 35 H 0.03 1.71 6.65 -2.39 -0.02 1.69 16 36 H 0.03 1.59 6.18 -2.39 -0.01 1.58 16 37 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -71.30 308.69 5.50 -65.80 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.08 Total: 3.68 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.97 Total: 3.13 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -3.57 Total: -119.59 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.30 5.50 -65.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.604 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds