Wall clock time and date at job start Mon Mar 30 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47459 * 2 1 4 4 C 1.37096 * 120.00044 * 264.47979 * 3 2 1 5 5 H 1.07998 * 120.00353 * 146.14528 * 4 3 2 6 6 C 1.38950 * 119.99842 * 326.14286 * 4 3 2 7 7 N 1.31412 * 119.99917 * 337.75413 * 6 4 3 8 8 Si 1.86803 * 120.00125 * 157.75453 * 6 4 3 9 9 H 1.48497 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47226 * 120.00206 * 8 6 4 11 11 H 1.48495 * 109.47171 * 239.99890 * 8 6 4 12 12 C 1.34780 * 120.00177 * 84.47058 * 3 2 1 13 13 O 1.21286 * 119.99950 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99571 * 359.73078 * 12 3 2 15 15 H 1.09005 * 115.55159 * 34.69005 * 14 12 3 16 16 C 1.53004 * 117.49760 * 249.01597 * 14 12 3 17 17 C 1.53008 * 117.49747 * 180.36087 * 14 12 3 18 18 H 1.08996 * 117.49745 * 214.98020 * 17 14 12 19 19 C 1.50703 * 117.49619 * 359.97438 * 17 14 12 20 20 C 1.38233 * 119.99740 * 59.72591 * 19 17 14 21 21 C 1.38237 * 119.99399 * 179.76197 * 20 19 17 22 22 C 1.38236 * 120.00107 * 0.51359 * 21 20 19 23 23 C 1.38227 * 119.99943 * 359.74291 * 22 21 20 24 24 C 1.38231 * 120.00282 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47118 * 299.99929 * 1 2 3 27 27 H 1.09005 * 109.47160 * 60.00116 * 1 2 3 28 28 H 1.09004 * 109.47504 * 239.99968 * 2 1 3 29 29 H 1.09005 * 109.47160 * 119.99884 * 2 1 3 30 30 H 0.97009 * 120.00106 * 179.97438 * 7 6 4 31 31 H 1.08996 * 117.49870 * 0.02562 * 16 14 12 32 32 H 1.09003 * 117.49272 * 145.00213 * 16 14 12 33 33 H 1.07997 * 120.00328 * 0.02562 * 20 19 17 34 34 H 1.08001 * 119.99776 * 180.22871 * 21 20 19 35 35 H 1.07998 * 119.99635 * 179.72237 * 22 21 20 36 36 H 1.08006 * 119.99891 * 179.97438 * 23 22 21 37 37 H 1.08002 * 120.00187 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3546 1.9894 -1.1818 5 1 2.1871 3.0485 -1.3109 6 6 2.9109 1.2432 -2.2135 7 7 3.5133 0.1053 -1.9505 8 14 2.8024 1.8575 -3.9743 9 1 2.0801 3.1546 -4.0023 10 1 4.1714 2.0419 -4.5194 11 1 2.0702 0.8646 -4.8007 12 6 2.1370 2.0541 1.1618 13 8 2.5409 3.1977 1.1617 14 6 1.7615 1.3876 2.4602 15 1 1.9701 0.3193 2.5178 16 6 0.5176 1.9047 3.1857 17 6 1.9106 2.2069 3.7438 18 1 2.2170 1.6775 4.6459 19 6 2.4223 3.6183 3.6128 20 6 1.7274 4.5374 2.8492 21 6 2.1942 5.8333 2.7331 22 6 3.3616 6.2073 3.3721 23 6 4.0593 5.2868 4.1314 24 6 3.5900 3.9921 4.2514 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9013 -0.4159 -2.6708 31 1 -0.0293 2.7266 2.7238 32 1 -0.0920 1.1765 3.7208 33 1 0.8175 4.2441 2.3467 34 1 1.6493 6.5524 2.1395 35 1 3.7286 7.2186 3.2777 36 1 4.9716 5.5789 4.6302 37 1 4.1354 3.2728 4.8443 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:03 Heat of formation + Delta-G solvation = 31.324191 kcal Electronic energy + Delta-G solvation = -19601.479400 eV Core-core repulsion = 16731.213048 eV Total energy + Delta-G solvation = -2870.266352 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70794 -37.98532 -35.91371 -34.63584 -31.96550 -30.34288 -29.93920 -29.38423 -25.66270 -23.43235 -22.93905 -22.10664 -21.86027 -20.02751 -18.32940 -17.01172 -16.57175 -15.89903 -15.02925 -14.63439 -14.46714 -14.05123 -13.76413 -13.49001 -13.03140 -12.78570 -12.74819 -12.44694 -12.04747 -11.78407 -11.63092 -11.46186 -11.10023 -10.90147 -10.57990 -10.53723 -10.45157 -10.32091 -10.15946 -9.98158 -9.83701 -8.91680 -8.61358 -8.17308 -7.52504 -7.33530 -6.31264 -3.91102 1.95614 2.11445 3.15083 3.26697 3.33046 3.65399 4.15298 4.33413 4.60464 4.77564 5.04179 5.13816 5.34808 5.41721 5.47737 5.53957 5.60467 5.65146 5.84310 5.96868 6.01678 6.05942 6.18425 6.22914 6.28603 6.41540 6.47463 6.58115 6.62087 6.66771 6.91839 7.05560 7.13264 7.29427 7.30817 7.61396 7.65458 8.27832 8.55394 9.23434 9.46334 10.08792 10.72229 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.006934 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.062728 B = 4037.300586 C = 4783.888141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.436 5.436 4 C -0.302 4.302 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.869 5.869 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.479 3.521 13 O -0.560 6.560 14 C -0.160 4.160 15 H 0.114 0.886 16 C -0.158 4.158 17 C -0.095 4.095 18 H 0.110 0.890 19 C -0.034 4.034 20 C -0.034 4.034 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.116 4.116 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 1.722 9.290 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.154 5.154 4 C -0.430 4.430 5 H 0.109 0.891 6 C -0.170 4.170 7 N -0.508 5.508 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.267 3.733 13 O -0.443 6.443 14 C -0.181 4.181 15 H 0.132 0.868 16 C -0.196 4.196 17 C -0.114 4.114 18 H 0.128 0.872 19 C -0.034 4.034 20 C -0.052 4.052 21 C -0.151 4.151 22 C -0.144 4.144 23 C -0.156 4.156 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.476 2.130 9.134 10.392 hybrid contribution 0.135 -0.177 -1.077 1.100 sum -4.342 1.953 8.057 9.358 Atomic orbital electron populations 1.22190 0.98237 1.00169 1.01516 1.21571 0.91711 0.85646 1.03826 1.43513 1.55316 1.11783 1.04808 1.19476 1.39219 0.95424 0.88910 0.89055 1.25316 0.94641 0.96537 1.00469 1.69940 1.32784 1.15284 1.32774 0.86052 0.78099 0.79076 0.82609 1.19234 1.20839 1.20627 1.19414 0.82608 0.87631 0.83686 1.90580 1.50013 1.17985 1.85727 1.22451 1.03033 0.99501 0.93096 0.86768 1.23038 0.90281 1.03252 1.03007 1.21025 0.99487 0.94155 0.96725 0.87197 1.18785 0.94943 0.92631 0.97042 1.20655 0.99009 0.91999 0.93507 1.20882 0.97299 0.96422 1.00504 1.20900 0.95920 0.98885 0.98646 1.20818 0.99800 0.93894 1.01120 1.20708 0.95920 0.95989 1.00846 0.93335 0.93646 0.92690 0.87128 0.93551 0.92357 0.88392 0.88420 0.87157 0.87198 0.87311 0.87196 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.16 37.15 0.38 -2.56 16 2 C 0.10 2.10 5.43 -4.05 -0.02 2.08 16 3 N -0.44 -10.96 2.56 -114.81 -0.29 -11.26 16 4 C -0.30 -8.37 8.98 -14.93 -0.13 -8.51 16 5 H 0.09 2.66 7.70 -52.49 -0.40 2.26 16 6 C 0.03 0.90 4.92 -17.47 -0.09 0.82 16 7 N -0.87 -23.54 11.33 55.50 0.63 -22.91 16 8 Si 0.91 20.74 29.61 -169.99 -5.03 15.70 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 C 0.48 11.48 7.22 -10.99 -0.08 11.40 16 13 O -0.56 -14.85 11.50 5.55 0.06 -14.79 16 14 C -0.16 -2.96 4.79 -91.77 -0.44 -3.40 16 15 H 0.11 1.97 6.53 -51.93 -0.34 1.63 16 16 C -0.16 -2.41 9.26 -26.69 -0.25 -2.65 16 17 C -0.10 -1.57 6.04 -91.73 -0.55 -2.13 16 18 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 19 C -0.03 -0.63 4.38 -104.62 -0.46 -1.08 16 20 C -0.03 -0.64 6.16 -39.58 -0.24 -0.89 16 21 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 22 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 23 C -0.14 -2.27 10.05 -39.59 -0.40 -2.66 16 24 C -0.12 -2.01 9.74 -39.58 -0.39 -2.40 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.76 7.34 -51.93 -0.38 0.38 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.11 2.68 5.35 -51.93 -0.28 2.40 16 29 H 0.05 0.93 6.26 -51.93 -0.32 0.60 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.10 1.56 6.19 -51.93 -0.32 1.24 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 2.12 5.77 -52.49 -0.30 1.82 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -30.68 301.79 -8.42 -39.10 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.87 Total: 6.84 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.47 Total: -17.24 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.34 Total: -34.16 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.06 Total: -14.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.68 -8.42 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.428 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds