Wall clock time and date at job start Mon Mar 30 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47459 * 2 1 4 4 C 1.37096 * 120.00044 * 264.47979 * 3 2 1 5 5 H 1.07998 * 120.00353 * 146.14528 * 4 3 2 6 6 C 1.38950 * 119.99842 * 326.14286 * 4 3 2 7 7 N 1.31412 * 119.99917 * 337.75413 * 6 4 3 8 8 Si 1.86803 * 120.00125 * 157.75453 * 6 4 3 9 9 H 1.48497 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47226 * 120.00206 * 8 6 4 11 11 H 1.48495 * 109.47171 * 239.99890 * 8 6 4 12 12 C 1.34780 * 120.00177 * 84.47058 * 3 2 1 13 13 O 1.21286 * 119.99950 * 180.02562 * 12 3 2 14 14 C 1.50698 * 119.99571 * 359.73078 * 12 3 2 15 15 H 1.09005 * 115.55159 * 34.69005 * 14 12 3 16 16 C 1.53004 * 117.49760 * 249.01597 * 14 12 3 17 17 C 1.53008 * 117.49747 * 180.36087 * 14 12 3 18 18 H 1.08996 * 117.49745 * 214.98020 * 17 14 12 19 19 C 1.50703 * 117.49619 * 359.97438 * 17 14 12 20 20 C 1.38233 * 119.99740 * 59.72591 * 19 17 14 21 21 C 1.38237 * 119.99399 * 179.76197 * 20 19 17 22 22 C 1.38236 * 120.00107 * 0.51359 * 21 20 19 23 23 C 1.38227 * 119.99943 * 359.74291 * 22 21 20 24 24 C 1.38231 * 120.00282 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47202 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47118 * 299.99929 * 1 2 3 27 27 H 1.09005 * 109.47160 * 60.00116 * 1 2 3 28 28 H 1.09004 * 109.47504 * 239.99968 * 2 1 3 29 29 H 1.09005 * 109.47160 * 119.99884 * 2 1 3 30 30 H 0.97009 * 120.00106 * 179.97438 * 7 6 4 31 31 H 1.08996 * 117.49870 * 0.02562 * 16 14 12 32 32 H 1.09003 * 117.49272 * 145.00213 * 16 14 12 33 33 H 1.07997 * 120.00328 * 0.02562 * 20 19 17 34 34 H 1.08001 * 119.99776 * 180.22871 * 21 20 19 35 35 H 1.07998 * 119.99635 * 179.72237 * 22 21 20 36 36 H 1.08006 * 119.99891 * 179.97438 * 23 22 21 37 37 H 1.08002 * 120.00187 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3546 1.9894 -1.1818 5 1 2.1871 3.0485 -1.3109 6 6 2.9109 1.2432 -2.2135 7 7 3.5133 0.1053 -1.9505 8 14 2.8024 1.8575 -3.9743 9 1 2.0801 3.1546 -4.0023 10 1 4.1714 2.0419 -4.5194 11 1 2.0702 0.8646 -4.8007 12 6 2.1370 2.0541 1.1618 13 8 2.5409 3.1977 1.1617 14 6 1.7615 1.3876 2.4602 15 1 1.9701 0.3193 2.5178 16 6 0.5176 1.9047 3.1857 17 6 1.9106 2.2069 3.7438 18 1 2.2170 1.6775 4.6459 19 6 2.4223 3.6183 3.6128 20 6 1.7274 4.5374 2.8492 21 6 2.1942 5.8333 2.7331 22 6 3.3616 6.2073 3.3721 23 6 4.0593 5.2868 4.1314 24 6 3.5900 3.9921 4.2514 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9013 -0.4159 -2.6708 31 1 -0.0293 2.7266 2.7238 32 1 -0.0920 1.1765 3.7208 33 1 0.8175 4.2441 2.3467 34 1 1.6493 6.5524 2.1395 35 1 3.7286 7.2186 3.2777 36 1 4.9716 5.5789 4.6302 37 1 4.1354 3.2728 4.8443 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:03 Heat of formation + Delta-G solvation = 15.219613 kcal Electronic energy + Delta-G solvation = -19602.177747 eV Core-core repulsion = 16731.213048 eV Total energy + Delta-G solvation = -2870.964699 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21914 -39.53136 -37.41962 -36.42471 -33.92163 -31.67027 -31.28775 -31.07321 -27.54052 -24.84176 -24.46385 -23.75058 -23.20421 -21.36745 -19.98935 -18.73674 -18.26937 -17.45525 -16.82882 -16.10514 -15.93538 -15.70242 -15.33065 -14.95629 -14.62266 -14.39562 -14.10607 -13.84212 -13.70299 -13.46535 -13.25507 -12.89301 -12.73389 -12.59183 -12.32038 -12.08025 -11.91959 -11.84589 -11.73907 -11.42863 -11.22595 -10.82653 -10.29237 -9.57292 -9.34982 -8.90818 -8.31685 -5.99316 0.61696 0.76287 1.33776 1.39090 1.52308 2.02362 2.29337 2.82472 3.06627 3.13712 3.31663 3.77957 4.01235 4.04425 4.13189 4.24558 4.28707 4.36593 4.38038 4.55929 4.69816 4.72071 4.81454 4.83315 4.93004 5.03922 5.08912 5.19333 5.33277 5.34222 5.34790 5.48151 5.62915 5.73777 5.78907 5.94515 6.24045 6.34710 6.60477 7.25500 7.57527 8.20243 8.70060 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.006934 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.062728 B = 4037.300586 C = 4783.888141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.096 3.904 3 N -0.454 5.454 4 C -0.332 4.332 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.890 5.890 8 Si 0.976 3.024 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.467 3.533 13 O -0.596 6.596 14 C -0.178 4.178 15 H 0.131 0.869 16 C -0.132 4.132 17 C -0.092 4.092 18 H 0.144 0.856 19 C -0.055 4.055 20 C -0.056 4.056 21 C -0.153 4.153 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.129 4.129 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.272 0.728 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 0.829 10.589 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 N -0.173 5.173 4 C -0.461 4.461 5 H 0.078 0.922 6 C -0.201 4.201 7 N -0.528 5.528 8 Si 0.800 3.200 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.188 1.188 12 C 0.257 3.743 13 O -0.481 6.481 14 C -0.199 4.199 15 H 0.149 0.851 16 C -0.169 4.169 17 C -0.110 4.110 18 H 0.162 0.838 19 C -0.055 4.055 20 C -0.074 4.074 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.147 4.147 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.804 1.213 10.444 11.560 hybrid contribution 0.278 0.169 -1.434 1.470 sum -4.526 1.382 9.010 10.177 Atomic orbital electron populations 1.22068 0.95402 1.02188 1.01216 1.21629 0.94014 0.83812 1.03236 1.43770 1.55987 1.12967 1.04579 1.19345 1.40939 0.94609 0.91159 0.92180 1.25994 0.93867 0.96696 1.03578 1.70006 1.32906 1.15977 1.33949 0.85159 0.78019 0.78618 0.78240 1.19802 1.20652 1.18808 1.20336 0.81458 0.87328 0.85211 1.90558 1.51226 1.19648 1.86715 1.22283 1.06625 1.00003 0.90982 0.85145 1.23166 0.89661 1.03020 1.01073 1.21265 1.00234 0.92983 0.96543 0.83802 1.19120 0.95534 0.93618 0.97188 1.20719 0.99228 0.93011 0.94465 1.21164 0.98303 0.96529 1.01161 1.21259 0.95338 1.00387 0.98143 1.21254 1.00597 0.93607 1.00619 1.21105 0.95708 0.96997 1.00924 0.90045 0.92356 0.94542 0.89748 0.91917 0.91870 0.89739 0.84170 0.88598 0.86497 0.84738 0.84237 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 10.16 71.98 0.73 -4.49 16 2 C 0.10 4.17 5.43 86.38 0.47 4.64 16 3 N -0.45 -23.34 2.56 -635.55 -1.63 -24.97 16 4 C -0.33 -19.10 8.98 84.04 0.75 -18.35 16 5 H 0.06 3.73 7.70 -2.91 -0.02 3.71 16 6 C 0.00 0.02 4.92 84.93 0.42 0.44 16 7 N -0.89 -48.71 11.33 21.66 0.25 -48.46 16 8 Si 0.98 43.24 29.61 68.60 2.03 45.27 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 C 0.47 22.75 7.22 87.66 0.63 23.38 16 13 O -0.60 -32.76 11.50 -3.05 -0.04 -32.80 16 14 C -0.18 -6.33 4.79 -11.54 -0.06 -6.39 16 15 H 0.13 4.17 6.53 -2.38 -0.02 4.15 16 16 C -0.13 -3.68 9.26 30.62 0.28 -3.40 16 17 C -0.09 -2.83 6.04 -11.51 -0.07 -2.90 16 18 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 19 C -0.05 -1.97 4.38 -19.86 -0.09 -2.06 16 20 C -0.06 -2.19 6.16 22.27 0.14 -2.05 16 21 C -0.15 -5.60 10.05 22.27 0.22 -5.38 16 22 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 23 C -0.14 -4.45 10.05 22.27 0.22 -4.23 16 24 C -0.13 -4.28 9.74 22.27 0.22 -4.06 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.85 7.34 -2.39 -0.02 1.83 16 27 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.08 4.11 5.35 -2.38 -0.01 4.10 16 29 H 0.06 2.44 6.26 -2.38 -0.01 2.42 16 30 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 31 H 0.08 2.62 6.19 -2.39 -0.01 2.60 16 32 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.10 3.88 5.77 -2.91 -0.02 3.87 16 34 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -69.11 301.79 5.78 -63.33 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 1.06 Total: 26.56 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 4.10 Total: -28.93 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.38 Total: -73.43 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.04 Total: -32.80 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -69.11 5.78 -63.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.550 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds