Wall clock time and date at job start Mon Mar 30 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47268 * 2 1 4 4 C 1.37097 * 120.00330 * 262.70084 * 3 2 1 5 5 H 1.07995 * 120.00026 * 142.13311 * 4 3 2 6 6 C 1.38949 * 119.99901 * 322.13410 * 4 3 2 7 7 N 1.31414 * 120.00006 * 157.58088 * 6 4 3 8 8 Si 1.86800 * 119.99827 * 337.58355 * 6 4 3 9 9 H 1.48498 * 109.47229 * 95.21830 * 8 6 4 10 10 H 1.48504 * 109.46761 * 215.21766 * 8 6 4 11 11 H 1.48496 * 109.47368 * 335.21254 * 8 6 4 12 12 C 1.34778 * 119.99575 * 82.69932 * 3 2 1 13 13 O 1.21294 * 119.99658 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00107 * 0.27533 * 12 3 2 15 15 H 1.08994 * 115.54982 * 325.39421 * 14 12 3 16 16 C 1.53002 * 117.49808 * 111.10541 * 14 12 3 17 17 C 1.52997 * 60.00110 * 107.48753 * 16 14 12 18 18 H 1.08996 * 117.51735 * 252.52033 * 17 16 14 19 19 C 1.50696 * 117.49921 * 107.49059 * 17 16 14 20 20 C 1.38242 * 120.00053 * 351.10124 * 19 17 16 21 21 C 1.38231 * 120.00056 * 179.78727 * 20 19 17 22 22 C 1.38237 * 119.99887 * 0.44899 * 21 20 19 23 23 C 1.38233 * 120.00249 * 359.80424 * 22 21 20 24 24 C 1.38235 * 120.00322 * 171.38094 * 19 17 16 25 25 H 1.09010 * 109.46860 * 299.99910 * 1 2 3 26 26 H 1.08999 * 109.47620 * 59.99150 * 1 2 3 27 27 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47027 * 240.00603 * 2 1 3 29 29 H 1.08994 * 109.47841 * 120.00436 * 2 1 3 30 30 H 0.96999 * 120.00029 * 179.97438 * 7 6 4 31 31 H 1.08997 * 117.49839 * 214.98277 * 16 14 12 32 32 H 1.09003 * 117.49760 * 359.97438 * 16 14 12 33 33 H 1.08004 * 119.99557 * 0.02562 * 20 19 17 34 34 H 1.08005 * 119.99995 * 180.27473 * 21 20 19 35 35 H 1.08001 * 119.99545 * 179.83419 * 22 21 20 36 36 H 1.07994 * 120.00423 * 180.02562 * 23 22 21 37 37 H 1.07996 * 119.99736 * 359.97365 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3891 1.9773 -1.1776 5 1 2.1672 3.0204 -1.3482 6 6 3.0503 1.2394 -2.1517 7 7 3.0211 1.6313 -3.4057 8 14 3.9808 -0.3098 -1.6787 9 1 3.1083 -1.4936 -1.8846 10 1 5.1944 -0.4361 -2.5252 11 1 4.3796 -0.2311 -0.2505 12 6 2.1031 2.0660 1.1578 13 8 2.5070 3.2097 1.1578 14 6 1.7014 1.4087 2.4531 15 1 0.8696 0.7076 2.3863 16 6 2.8100 1.0966 3.4604 17 6 1.8267 2.2364 3.7338 18 1 2.1992 3.2563 3.6394 19 6 0.7908 2.0194 4.8066 20 6 0.6333 0.7680 5.3724 21 6 -0.3138 0.5700 6.3595 22 6 -1.1099 1.6213 6.7744 23 6 -0.9561 2.8714 6.2049 24 6 -0.0059 3.0704 5.2208 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.4831 1.1163 -4.0857 31 1 2.7076 0.1897 4.0563 32 1 3.8298 1.3662 3.1860 33 1 1.2530 -0.0541 5.0459 34 1 -0.4338 -0.4067 6.8047 35 1 -1.8518 1.4659 7.5437 36 1 -1.5777 3.6928 6.5292 37 1 0.1143 4.0471 4.7759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:06 Heat of formation + Delta-G solvation = 24.749103 kcal Electronic energy + Delta-G solvation = -19022.037867 eV Core-core repulsion = 16151.486397 eV Total energy + Delta-G solvation = -2870.551469 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85612 -38.68200 -36.20521 -34.94981 -32.25929 -30.95357 -30.46948 -29.71735 -25.86697 -23.75191 -23.17468 -22.63920 -22.14111 -20.26568 -18.55480 -17.31690 -16.84972 -16.15981 -15.67926 -14.98567 -14.91456 -14.37269 -14.09481 -13.74591 -13.35398 -13.21497 -12.86196 -12.83314 -12.34875 -12.15271 -12.10292 -11.73885 -11.35237 -11.21930 -11.01799 -10.88387 -10.70579 -10.45275 -10.15193 -10.06711 -9.83939 -9.06989 -8.93275 -8.64394 -8.38101 -7.73960 -6.39530 -3.95436 1.31985 1.39539 3.02630 3.20647 3.27529 3.43319 3.77468 4.14691 4.31964 4.39149 4.79707 4.87531 4.94758 4.97519 5.10113 5.17600 5.29812 5.40375 5.51544 5.53364 5.62895 5.67451 5.86797 5.92080 5.97765 6.01811 6.05327 6.20999 6.29866 6.33238 6.44093 6.48640 6.51627 6.73531 6.75811 6.99886 7.56432 8.30401 8.53199 8.97688 9.33255 9.80538 10.72617 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034202 B = 0.005122 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.459742 B = 5465.714825 C = 5602.945298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 N -0.461 5.461 4 C -0.315 4.315 5 H 0.104 0.896 6 C 0.061 3.939 7 N -0.863 5.863 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.263 1.263 12 C 0.493 3.507 13 O -0.565 6.565 14 C -0.162 4.162 15 H 0.116 0.884 16 C -0.152 4.152 17 C -0.097 4.097 18 H 0.125 0.875 19 C -0.040 4.040 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.274 0.726 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -5.718 16.796 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.036 4.036 3 N -0.182 5.182 4 C -0.442 4.442 5 H 0.122 0.878 6 C -0.145 4.145 7 N -0.500 5.500 8 Si 0.701 3.299 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.187 1.187 12 C 0.281 3.719 13 O -0.447 6.447 14 C -0.183 4.183 15 H 0.134 0.866 16 C -0.189 4.189 17 C -0.115 4.115 18 H 0.143 0.857 19 C -0.040 4.040 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.007 -5.162 16.544 18.342 hybrid contribution 0.430 -0.996 -0.031 1.085 sum -5.577 -6.158 16.513 18.486 Atomic orbital electron populations 1.22168 0.96377 1.00985 1.02678 1.21792 0.94562 0.85749 1.01492 1.43666 1.56914 1.11418 1.06165 1.19036 1.36696 0.98621 0.89806 0.87822 1.25351 0.96240 0.98158 0.94709 1.69767 1.40080 1.40234 0.99874 0.87000 0.80247 0.82883 0.79802 1.20199 1.21346 1.18703 1.19314 0.81883 0.87300 0.83397 1.90544 1.49735 1.18231 1.86199 1.22528 1.02186 1.03279 0.90332 0.86602 1.23050 0.95730 0.99185 1.00979 1.21065 0.98267 0.98384 0.93824 0.85718 1.19263 0.95694 0.93490 0.95601 1.21099 0.98849 0.96937 0.97179 1.21091 0.96208 0.98857 0.97565 1.21100 0.99944 0.93337 1.00587 1.21122 0.98391 0.97230 0.96930 1.21053 0.95580 0.99131 0.97200 0.92915 0.91480 0.92684 0.90703 0.92137 0.91616 0.88200 0.87972 0.85898 0.86279 0.86424 0.86181 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.97 37.15 0.37 -2.44 16 2 C 0.09 1.77 4.33 -4.04 -0.02 1.75 16 3 N -0.46 -11.29 2.19 -114.81 -0.25 -11.54 16 4 C -0.31 -9.00 9.35 -14.93 -0.14 -9.14 16 5 H 0.10 3.34 7.92 -52.49 -0.42 2.92 16 6 C 0.06 1.70 5.25 -17.47 -0.09 1.61 16 7 N -0.86 -25.07 13.96 55.50 0.77 -24.30 16 8 Si 0.87 20.60 25.08 -169.99 -4.26 16.33 16 9 H -0.28 -6.02 6.68 56.52 0.38 -5.64 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.49 11.67 7.35 -10.99 -0.08 11.59 16 13 O -0.57 -15.50 16.13 5.54 0.09 -15.41 16 14 C -0.16 -2.88 4.37 -91.77 -0.40 -3.29 16 15 H 0.12 1.87 5.87 -51.93 -0.30 1.56 16 16 C -0.15 -2.30 9.56 -26.73 -0.26 -2.55 16 17 C -0.10 -1.54 5.55 -91.77 -0.51 -2.05 16 18 H 0.12 2.18 7.67 -51.93 -0.40 1.78 16 19 C -0.04 -0.56 5.61 -104.62 -0.59 -1.15 16 20 C -0.12 -1.48 9.29 -39.58 -0.37 -1.85 16 21 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 22 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.11 -1.44 9.74 -39.58 -0.39 -1.83 16 25 H 0.05 0.85 6.63 -51.92 -0.34 0.51 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.60 3.71 -51.92 -0.19 1.41 16 29 H 0.06 1.06 7.06 -51.93 -0.37 0.69 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.10 1.20 6.18 -51.93 -0.32 0.88 16 32 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.12 1.32 6.03 -52.48 -0.32 1.01 16 34 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -32.10 304.80 -7.50 -39.60 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.78 Total: 5.20 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.66 Total: -14.48 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.52 Total: -35.84 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.26 Total: 16.33 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.10 -7.50 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.345 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds