Wall clock time and date at job start Mon Mar 30 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47268 * 2 1 4 4 C 1.37097 * 120.00330 * 262.70084 * 3 2 1 5 5 H 1.07995 * 120.00026 * 142.13311 * 4 3 2 6 6 C 1.38949 * 119.99901 * 322.13410 * 4 3 2 7 7 N 1.31414 * 120.00006 * 157.58088 * 6 4 3 8 8 Si 1.86800 * 119.99827 * 337.58355 * 6 4 3 9 9 H 1.48498 * 109.47229 * 95.21830 * 8 6 4 10 10 H 1.48504 * 109.46761 * 215.21766 * 8 6 4 11 11 H 1.48496 * 109.47368 * 335.21254 * 8 6 4 12 12 C 1.34778 * 119.99575 * 82.69932 * 3 2 1 13 13 O 1.21294 * 119.99658 * 180.02562 * 12 3 2 14 14 C 1.50698 * 120.00107 * 0.27533 * 12 3 2 15 15 H 1.08994 * 115.54982 * 325.39421 * 14 12 3 16 16 C 1.53002 * 117.49808 * 111.10541 * 14 12 3 17 17 C 1.52997 * 60.00110 * 107.48753 * 16 14 12 18 18 H 1.08996 * 117.51735 * 252.52033 * 17 16 14 19 19 C 1.50696 * 117.49921 * 107.49059 * 17 16 14 20 20 C 1.38242 * 120.00053 * 351.10124 * 19 17 16 21 21 C 1.38231 * 120.00056 * 179.78727 * 20 19 17 22 22 C 1.38237 * 119.99887 * 0.44899 * 21 20 19 23 23 C 1.38233 * 120.00249 * 359.80424 * 22 21 20 24 24 C 1.38235 * 120.00322 * 171.38094 * 19 17 16 25 25 H 1.09010 * 109.46860 * 299.99910 * 1 2 3 26 26 H 1.08999 * 109.47620 * 59.99150 * 1 2 3 27 27 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47027 * 240.00603 * 2 1 3 29 29 H 1.08994 * 109.47841 * 120.00436 * 2 1 3 30 30 H 0.96999 * 120.00029 * 179.97438 * 7 6 4 31 31 H 1.08997 * 117.49839 * 214.98277 * 16 14 12 32 32 H 1.09003 * 117.49760 * 359.97438 * 16 14 12 33 33 H 1.08004 * 119.99557 * 0.02562 * 20 19 17 34 34 H 1.08005 * 119.99995 * 180.27473 * 21 20 19 35 35 H 1.08001 * 119.99545 * 179.83419 * 22 21 20 36 36 H 1.07994 * 120.00423 * 180.02562 * 23 22 21 37 37 H 1.07996 * 119.99736 * 359.97365 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3891 1.9773 -1.1776 5 1 2.1672 3.0204 -1.3482 6 6 3.0503 1.2394 -2.1517 7 7 3.0211 1.6313 -3.4057 8 14 3.9808 -0.3098 -1.6787 9 1 3.1083 -1.4936 -1.8846 10 1 5.1944 -0.4361 -2.5252 11 1 4.3796 -0.2311 -0.2505 12 6 2.1031 2.0660 1.1578 13 8 2.5070 3.2097 1.1578 14 6 1.7014 1.4087 2.4531 15 1 0.8696 0.7076 2.3863 16 6 2.8100 1.0966 3.4604 17 6 1.8267 2.2364 3.7338 18 1 2.1992 3.2563 3.6394 19 6 0.7908 2.0194 4.8066 20 6 0.6333 0.7680 5.3724 21 6 -0.3138 0.5700 6.3595 22 6 -1.1099 1.6213 6.7744 23 6 -0.9561 2.8714 6.2049 24 6 -0.0059 3.0704 5.2208 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.4831 1.1163 -4.0857 31 1 2.7076 0.1897 4.0563 32 1 3.8298 1.3662 3.1860 33 1 1.2530 -0.0541 5.0459 34 1 -0.4338 -0.4067 6.8047 35 1 -1.8518 1.4659 7.5437 36 1 -1.5777 3.6928 6.5292 37 1 0.1143 4.0471 4.7759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:05 Heat of formation + Delta-G solvation = 5.388500 kcal Electronic energy + Delta-G solvation = -19022.877406 eV Core-core repulsion = 16151.486397 eV Total energy + Delta-G solvation = -2871.391008 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22872 -40.00791 -37.61830 -36.74517 -34.33578 -31.80534 -31.46831 -31.33842 -27.76851 -24.89799 -24.68942 -24.06775 -23.18948 -21.36074 -20.25877 -18.94815 -18.39675 -17.56929 -17.45117 -16.27122 -15.99417 -15.85504 -15.49120 -15.20609 -14.73483 -14.58187 -14.28549 -14.18831 -13.80727 -13.73482 -13.55148 -13.00916 -12.80452 -12.70491 -12.49738 -12.15054 -11.98753 -11.86409 -11.71335 -11.55762 -11.32395 -11.06324 -10.44363 -9.77318 -9.74642 -9.44680 -8.54201 -6.16281 0.42360 0.54992 1.17703 1.29991 1.43959 1.77909 2.16371 2.55595 2.79856 2.89064 3.19590 3.59551 3.81869 3.91407 4.00540 4.06255 4.18553 4.23498 4.29363 4.33955 4.41895 4.50282 4.64286 4.72507 4.77502 4.90947 4.94046 5.03185 5.09294 5.19647 5.23101 5.35081 5.53707 5.63798 5.67065 5.78276 6.01025 6.16630 6.54915 6.91653 7.28187 7.85871 8.63362 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034202 B = 0.005122 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.459742 B = 5465.714825 C = 5602.945298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.079 3.921 3 N -0.471 5.471 4 C -0.337 4.337 5 H 0.039 0.961 6 C 0.014 3.986 7 N -0.910 5.910 8 Si 0.948 3.052 9 H -0.236 1.236 10 H -0.287 1.287 11 H -0.257 1.257 12 C 0.483 3.517 13 O -0.621 6.621 14 C -0.172 4.172 15 H 0.143 0.857 16 C -0.129 4.129 17 C -0.092 4.092 18 H 0.094 0.906 19 C -0.060 4.060 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.281 0.719 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 -9.938 19.943 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.043 4.043 3 N -0.192 5.192 4 C -0.465 4.465 5 H 0.057 0.943 6 C -0.188 4.188 7 N -0.547 5.547 8 Si 0.770 3.230 9 H -0.160 1.160 10 H -0.214 1.214 11 H -0.181 1.181 12 C 0.274 3.726 13 O -0.507 6.507 14 C -0.193 4.193 15 H 0.160 0.840 16 C -0.166 4.166 17 C -0.111 4.111 18 H 0.112 0.888 19 C -0.060 4.060 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.142 4.142 24 C -0.152 4.152 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.887 -9.408 19.694 22.887 hybrid contribution 0.618 0.468 -0.974 1.245 sum -6.269 -8.940 18.721 21.672 Atomic orbital electron populations 1.22115 0.94178 1.03469 1.01722 1.22085 0.96515 0.83001 1.02723 1.43814 1.57154 1.13203 1.04996 1.18623 1.38805 0.96651 0.92414 0.94329 1.26165 0.96211 1.02463 0.93964 1.69881 1.40988 1.42624 1.01218 0.85844 0.78657 0.79097 0.79417 1.16046 1.21387 1.18077 1.20366 0.80400 0.86680 0.85198 1.90504 1.51963 1.20855 1.87355 1.22355 1.04588 1.04726 0.87630 0.83975 1.23224 0.94121 1.00357 0.98903 1.20952 0.99389 0.97244 0.93475 0.88813 1.19154 0.95957 0.94924 0.96003 1.21302 0.99410 0.96277 0.97272 1.21479 0.95166 1.00262 0.96701 1.21515 0.99992 0.92677 1.00464 1.21381 0.97924 0.98625 0.96246 1.21163 0.96777 0.98860 0.98441 0.92023 0.94385 0.88329 0.91740 0.88273 0.90960 0.83777 0.89374 0.84108 0.83260 0.83556 0.84360 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.97 71.98 0.72 -4.28 16 2 C 0.08 3.00 4.33 86.38 0.37 3.37 16 3 N -0.47 -23.55 2.19 -635.54 -1.39 -24.94 16 4 C -0.34 -20.47 9.35 84.04 0.79 -19.68 16 5 H 0.04 2.76 7.92 -2.91 -0.02 2.74 16 6 C 0.01 0.82 5.25 84.93 0.45 1.26 16 7 N -0.91 -55.04 13.96 21.66 0.30 -54.74 16 8 Si 0.95 42.10 25.08 68.60 1.72 43.82 16 9 H -0.24 -9.02 6.68 99.48 0.66 -8.36 16 10 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 12 C 0.48 23.59 7.35 87.66 0.64 24.23 16 13 O -0.62 -36.53 16.13 -3.07 -0.05 -36.58 16 14 C -0.17 -5.91 4.37 -11.54 -0.05 -5.96 16 15 H 0.14 4.10 5.87 -2.39 -0.01 4.09 16 16 C -0.13 -3.58 9.56 30.59 0.29 -3.28 16 17 C -0.09 -2.89 5.55 -11.54 -0.06 -2.95 16 18 H 0.09 3.50 7.67 -2.39 -0.02 3.48 16 19 C -0.06 -1.57 5.61 -19.87 -0.11 -1.68 16 20 C -0.12 -2.52 9.29 22.27 0.21 -2.31 16 21 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 22 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 23 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 24 C -0.13 -3.40 9.74 22.27 0.22 -3.18 16 25 H 0.06 1.84 6.63 -2.38 -0.02 1.82 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.58 3.71 -2.38 -0.01 2.57 16 29 H 0.10 3.01 7.06 -2.39 -0.02 2.99 16 30 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.14 2.71 6.18 -2.39 -0.01 2.70 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.14 2.24 6.03 -2.91 -0.02 2.22 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.11 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -77.48 304.80 5.74 -71.74 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.03 Total: 21.04 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 4.13 Total: -20.34 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.09 Total: -79.68 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.05 Total: -36.58 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.72 Total: 43.82 kcal Total: -77.48 5.74 -71.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.128 kcal (2) G-P(sol) polarization free energy of solvation -77.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds