Wall clock time and date at job start Mon Mar 30 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47174 * 2 1 4 4 C 1.37102 * 119.99800 * 95.49199 * 3 2 1 5 5 H 1.07998 * 119.99827 * 213.48211 * 4 3 2 6 6 C 1.38945 * 120.00277 * 33.75779 * 4 3 2 7 7 N 1.31415 * 119.99987 * 22.74516 * 6 4 3 8 8 Si 1.86797 * 120.00293 * 202.74804 * 6 4 3 9 9 H 1.48500 * 109.47322 * 89.99547 * 8 6 4 10 10 H 1.48507 * 109.47137 * 209.99857 * 8 6 4 11 11 H 1.48504 * 109.47044 * 329.99490 * 8 6 4 12 12 C 1.34773 * 120.00281 * 275.49125 * 3 2 1 13 13 O 1.21292 * 120.00147 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99937 * 359.97438 * 12 3 2 15 15 H 1.08997 * 115.55344 * 325.58238 * 14 12 3 16 16 C 1.53005 * 117.49791 * 111.25334 * 14 12 3 17 17 C 1.53002 * 117.50060 * 179.91403 * 14 12 3 18 18 H 1.09001 * 117.50092 * 145.01985 * 17 14 12 19 19 C 1.50707 * 117.49817 * 359.97438 * 17 14 12 20 20 C 1.38236 * 119.99739 * 299.72979 * 19 17 14 21 21 C 1.38238 * 119.99689 * 179.76493 * 20 19 17 22 22 C 1.38234 * 120.00115 * 0.48568 * 21 20 19 23 23 C 1.38235 * 119.99742 * 359.78980 * 22 21 20 24 24 C 1.38228 * 119.99912 * 120.00079 * 19 17 14 25 25 H 1.08996 * 109.47253 * 299.99764 * 1 2 3 26 26 H 1.09002 * 109.47069 * 60.00120 * 1 2 3 27 27 H 1.09003 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47090 * 240.00314 * 2 1 3 29 29 H 1.08996 * 109.47187 * 120.00319 * 2 1 3 30 30 H 0.96997 * 120.00511 * 180.02562 * 7 6 4 31 31 H 1.09001 * 117.49765 * 214.97664 * 16 14 12 32 32 H 1.08994 * 117.49632 * 359.97438 * 16 14 12 33 33 H 1.07997 * 120.00341 * 359.97438 * 20 19 17 34 34 H 1.08002 * 120.00113 * 180.25046 * 21 20 19 35 35 H 1.07992 * 120.00224 * 179.76756 * 22 21 20 36 36 H 1.08000 * 120.00204 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00310 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3539 1.9896 1.1819 5 1 2.1919 3.0498 1.3085 6 6 2.9079 1.2432 2.2147 7 7 3.5176 0.1091 1.9521 8 14 2.7858 1.8518 3.9766 9 1 1.5428 1.3268 4.5967 10 1 3.9627 1.3761 4.7473 11 1 2.7550 3.3365 3.9864 12 6 2.1377 2.0538 -1.1618 13 8 2.5415 3.1975 -1.1617 14 6 1.7693 1.3849 -2.4610 15 1 1.9787 0.3166 -2.5157 16 6 0.5291 1.9001 -3.1941 17 6 1.9250 2.2018 -3.7452 18 1 2.2364 1.6709 -4.6448 19 6 2.4344 3.6141 -3.6141 20 6 1.7281 4.5369 -2.8655 21 6 2.1979 5.8310 -2.7412 22 6 3.3688 6.2050 -3.3738 23 6 4.0721 5.2837 -4.1270 24 6 3.6050 3.9881 -4.2470 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9040 -0.4122 2.6731 31 1 -0.0772 1.1708 -3.7314 32 1 -0.0205 2.7226 -2.7364 33 1 0.8110 4.2459 -2.3750 34 1 1.6482 6.5510 -2.1530 35 1 3.7338 7.2170 -3.2798 36 1 4.9866 5.5759 -4.6216 37 1 4.1543 3.2684 -4.8358 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:10 Heat of formation + Delta-G solvation = 31.127120 kcal Electronic energy + Delta-G solvation = -19598.385223 eV Core-core repulsion = 16728.110326 eV Total energy + Delta-G solvation = -2870.274898 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.70281 -37.98708 -35.91442 -34.63087 -31.96589 -30.34513 -29.94048 -29.38379 -25.66173 -23.43272 -22.93843 -22.11005 -21.85932 -20.02862 -18.32803 -17.00916 -16.56801 -15.90060 -15.02831 -14.63480 -14.46838 -14.05208 -13.76638 -13.49335 -13.02489 -12.78502 -12.75127 -12.44001 -12.05235 -11.78269 -11.62985 -11.46283 -11.08757 -10.91613 -10.58028 -10.54251 -10.44222 -10.32386 -10.16266 -9.98365 -9.83619 -8.90933 -8.60941 -8.17646 -7.52826 -7.34329 -6.31271 -3.90600 1.95717 2.10933 3.16713 3.26725 3.31417 3.65591 4.15534 4.33352 4.60488 4.77404 5.04021 5.13910 5.34677 5.41550 5.47664 5.53762 5.60320 5.64780 5.84274 5.96742 6.01478 6.05988 6.18183 6.22765 6.28524 6.41401 6.47424 6.58003 6.61926 6.66524 6.91809 7.05323 7.13050 7.29150 7.30341 7.61736 7.65252 8.27819 8.55604 9.23677 9.46598 10.09089 10.72376 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.006925 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.996131 B = 4042.292771 C = 4785.286957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.436 5.436 4 C -0.304 4.304 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.869 5.869 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.478 3.522 13 O -0.560 6.560 14 C -0.159 4.159 15 H 0.114 0.886 16 C -0.158 4.158 17 C -0.096 4.096 18 H 0.110 0.890 19 C -0.032 4.032 20 C -0.037 4.037 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.137 4.137 24 C -0.117 4.117 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.267 0.733 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 1.712 -9.328 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.154 5.154 4 C -0.432 4.432 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.507 5.507 8 Si 0.742 3.258 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.267 3.733 13 O -0.443 6.443 14 C -0.181 4.181 15 H 0.132 0.868 16 C -0.196 4.196 17 C -0.114 4.114 18 H 0.128 0.872 19 C -0.032 4.032 20 C -0.055 4.055 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.436 2.120 -9.174 10.408 hybrid contribution 0.111 -0.172 1.078 1.097 sum -4.324 1.948 -8.096 9.383 Atomic orbital electron populations 1.22191 0.98230 1.00172 1.01520 1.21562 0.91722 0.85647 1.03782 1.43504 1.55336 1.11757 1.04817 1.19455 1.39468 0.95361 0.88893 0.89039 1.25309 0.94564 0.96586 1.00465 1.69943 1.32413 1.15509 1.32852 0.86097 0.77682 0.79474 0.82508 1.20381 1.21066 1.19374 1.19403 0.82616 0.87640 0.83687 1.90586 1.49955 1.18004 1.85768 1.22453 1.03071 0.99509 0.93020 0.86766 1.23040 0.90296 1.03259 1.03003 1.21029 0.99451 0.94161 0.96778 0.87187 1.18779 0.94835 0.92589 0.96982 1.20662 0.99015 0.92064 0.93726 1.20879 0.97194 0.96447 1.00392 1.20900 0.95930 0.98877 0.98740 1.20825 0.99738 0.93871 1.01085 1.20709 0.95976 0.95992 1.00884 0.92678 0.93650 0.93334 0.93538 0.87196 0.92305 0.88423 0.88382 0.87171 0.87195 0.87305 0.87189 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.16 37.16 0.38 -2.56 16 2 C 0.10 2.11 5.44 -4.05 -0.02 2.09 16 3 N -0.44 -10.97 2.56 -114.82 -0.29 -11.26 16 4 C -0.30 -8.42 8.98 -14.93 -0.13 -8.55 16 5 H 0.09 2.67 7.70 -52.49 -0.40 2.27 16 6 C 0.03 0.92 4.91 -17.47 -0.09 0.83 16 7 N -0.87 -23.54 11.36 55.50 0.63 -22.91 16 8 Si 0.92 20.76 29.61 -169.99 -5.03 15.72 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 C 0.48 11.49 7.24 -10.99 -0.08 11.41 16 13 O -0.56 -14.88 11.55 5.55 0.06 -14.81 16 14 C -0.16 -2.96 4.81 -91.77 -0.44 -3.40 16 15 H 0.11 1.97 6.52 -51.93 -0.34 1.63 16 16 C -0.16 -2.41 9.29 -26.69 -0.25 -2.66 16 17 C -0.10 -1.58 6.05 -91.73 -0.55 -2.13 16 18 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 19 C -0.03 -0.59 4.35 -104.62 -0.46 -1.04 16 20 C -0.04 -0.70 6.19 -39.58 -0.25 -0.94 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 23 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 24 C -0.12 -2.03 9.74 -39.58 -0.39 -2.42 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.76 7.39 -51.93 -0.38 0.38 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.93 6.25 -51.93 -0.32 0.61 16 29 H 0.11 2.66 5.36 -51.93 -0.28 2.38 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.56 6.17 -51.93 -0.32 1.24 16 33 H 0.11 2.11 5.80 -52.49 -0.30 1.81 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -30.70 301.99 -8.42 -39.12 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.87 Total: 6.85 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.47 Total: -17.26 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.34 Total: -34.17 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.06 Total: -14.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.70 -8.42 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.251 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds