Wall clock time and date at job start Mon Mar 30 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47174 * 2 1 4 4 C 1.37102 * 119.99800 * 95.49199 * 3 2 1 5 5 H 1.07998 * 119.99827 * 213.48211 * 4 3 2 6 6 C 1.38945 * 120.00277 * 33.75779 * 4 3 2 7 7 N 1.31415 * 119.99987 * 22.74516 * 6 4 3 8 8 Si 1.86797 * 120.00293 * 202.74804 * 6 4 3 9 9 H 1.48500 * 109.47322 * 89.99547 * 8 6 4 10 10 H 1.48507 * 109.47137 * 209.99857 * 8 6 4 11 11 H 1.48504 * 109.47044 * 329.99490 * 8 6 4 12 12 C 1.34773 * 120.00281 * 275.49125 * 3 2 1 13 13 O 1.21292 * 120.00147 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99937 * 359.97438 * 12 3 2 15 15 H 1.08997 * 115.55344 * 325.58238 * 14 12 3 16 16 C 1.53005 * 117.49791 * 111.25334 * 14 12 3 17 17 C 1.53002 * 117.50060 * 179.91403 * 14 12 3 18 18 H 1.09001 * 117.50092 * 145.01985 * 17 14 12 19 19 C 1.50707 * 117.49817 * 359.97438 * 17 14 12 20 20 C 1.38236 * 119.99739 * 299.72979 * 19 17 14 21 21 C 1.38238 * 119.99689 * 179.76493 * 20 19 17 22 22 C 1.38234 * 120.00115 * 0.48568 * 21 20 19 23 23 C 1.38235 * 119.99742 * 359.78980 * 22 21 20 24 24 C 1.38228 * 119.99912 * 120.00079 * 19 17 14 25 25 H 1.08996 * 109.47253 * 299.99764 * 1 2 3 26 26 H 1.09002 * 109.47069 * 60.00120 * 1 2 3 27 27 H 1.09003 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47090 * 240.00314 * 2 1 3 29 29 H 1.08996 * 109.47187 * 120.00319 * 2 1 3 30 30 H 0.96997 * 120.00511 * 180.02562 * 7 6 4 31 31 H 1.09001 * 117.49765 * 214.97664 * 16 14 12 32 32 H 1.08994 * 117.49632 * 359.97438 * 16 14 12 33 33 H 1.07997 * 120.00341 * 359.97438 * 20 19 17 34 34 H 1.08002 * 120.00113 * 180.25046 * 21 20 19 35 35 H 1.07992 * 120.00224 * 179.76756 * 22 21 20 36 36 H 1.08000 * 120.00204 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00310 * 0.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3539 1.9896 1.1819 5 1 2.1919 3.0498 1.3085 6 6 2.9079 1.2432 2.2147 7 7 3.5176 0.1091 1.9521 8 14 2.7858 1.8518 3.9766 9 1 1.5428 1.3268 4.5967 10 1 3.9627 1.3761 4.7473 11 1 2.7550 3.3365 3.9864 12 6 2.1377 2.0538 -1.1618 13 8 2.5415 3.1975 -1.1617 14 6 1.7693 1.3849 -2.4610 15 1 1.9787 0.3166 -2.5157 16 6 0.5291 1.9001 -3.1941 17 6 1.9250 2.2018 -3.7452 18 1 2.2364 1.6709 -4.6448 19 6 2.4344 3.6141 -3.6141 20 6 1.7281 4.5369 -2.8655 21 6 2.1979 5.8310 -2.7412 22 6 3.3688 6.2050 -3.3738 23 6 4.0721 5.2837 -4.1270 24 6 3.6050 3.9881 -4.2470 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9040 -0.4122 2.6731 31 1 -0.0772 1.1708 -3.7314 32 1 -0.0205 2.7226 -2.7364 33 1 0.8110 4.2459 -2.3750 34 1 1.6482 6.5510 -2.1530 35 1 3.7338 7.2170 -3.2798 36 1 4.9866 5.5759 -4.6216 37 1 4.1543 3.2684 -4.8358 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:10 Heat of formation + Delta-G solvation = 15.004217 kcal Electronic energy + Delta-G solvation = -19599.084365 eV Core-core repulsion = 16728.110326 eV Total energy + Delta-G solvation = -2870.974039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21358 -39.53352 -37.42020 -36.42178 -33.92382 -31.67138 -31.28781 -31.07459 -27.54057 -24.84026 -24.46471 -23.75440 -23.20343 -21.36772 -19.98818 -18.73441 -18.26846 -17.45159 -16.83224 -16.10473 -15.93835 -15.70186 -15.33356 -14.95701 -14.61687 -14.39680 -14.10949 -13.83546 -13.70489 -13.47101 -13.25723 -12.87700 -12.73412 -12.59841 -12.31224 -12.09877 -11.92315 -11.84645 -11.74186 -11.42627 -11.22354 -10.81881 -10.28953 -9.57612 -9.35454 -8.91586 -8.31902 -5.98982 0.61858 0.75901 1.35465 1.39204 1.50483 2.02518 2.29441 2.82368 3.06428 3.13688 3.31520 3.78030 4.01112 4.04369 4.13022 4.24465 4.28506 4.36469 4.37765 4.55946 4.69587 4.71923 4.81330 4.83071 4.92943 5.03806 5.08780 5.19339 5.33198 5.34033 5.34628 5.48344 5.62391 5.73605 5.78799 5.94324 6.23798 6.34611 6.60503 7.25580 7.57651 8.20403 8.69875 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.006925 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.996131 B = 4042.292771 C = 4785.286957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 N -0.454 5.454 4 C -0.334 4.334 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.889 5.889 8 Si 0.976 3.024 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.467 3.533 13 O -0.596 6.596 14 C -0.178 4.178 15 H 0.131 0.869 16 C -0.132 4.132 17 C -0.092 4.092 18 H 0.144 0.856 19 C -0.053 4.053 20 C -0.059 4.059 21 C -0.152 4.152 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.130 4.130 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.272 0.728 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 0.811 -10.615 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 N -0.173 5.173 4 C -0.462 4.462 5 H 0.078 0.922 6 C -0.201 4.201 7 N -0.528 5.528 8 Si 0.800 3.200 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.257 3.743 13 O -0.482 6.482 14 C -0.199 4.199 15 H 0.149 0.851 16 C -0.169 4.169 17 C -0.111 4.111 18 H 0.162 0.838 19 C -0.053 4.053 20 C -0.077 4.077 21 C -0.170 4.170 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.789 1.195 -10.472 11.577 hybrid contribution 0.262 0.175 1.431 1.465 sum -4.527 1.371 -9.041 10.203 Atomic orbital electron populations 1.22068 0.95402 1.02194 1.01206 1.21622 0.94018 0.83808 1.03206 1.43763 1.56000 1.12946 1.04586 1.19324 1.41201 0.94533 0.91144 0.92171 1.25990 0.93782 0.96730 1.03586 1.70010 1.32546 1.16209 1.33995 0.85204 0.78340 0.78366 0.78087 1.18803 1.20263 1.20245 1.20326 0.81453 0.87337 0.85215 1.90563 1.51184 1.19680 1.86754 1.22284 1.06693 1.00001 0.90898 0.85145 1.23169 0.89670 1.03035 1.01051 1.21270 1.00220 0.92994 0.96573 0.83794 1.19117 0.95429 0.93584 0.97146 1.20730 0.99225 0.93058 0.94681 1.21165 0.98208 0.96572 1.01049 1.21260 0.95356 1.00377 0.98236 1.21261 1.00550 0.93587 1.00581 1.21106 0.95775 0.97003 1.00957 0.94560 0.92355 0.90036 0.91885 0.89812 0.91863 0.84169 0.89715 0.88549 0.86482 0.84739 0.84234 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 10.16 71.98 0.73 -4.49 16 2 C 0.10 4.18 5.44 86.38 0.47 4.65 16 3 N -0.45 -23.34 2.56 -635.56 -1.63 -24.97 16 4 C -0.33 -19.20 8.98 84.04 0.75 -18.44 16 5 H 0.06 3.74 7.70 -2.91 -0.02 3.72 16 6 C 0.00 0.06 4.91 84.92 0.42 0.48 16 7 N -0.89 -48.71 11.36 21.66 0.25 -48.47 16 8 Si 0.98 43.25 29.61 68.60 2.03 45.28 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.47 22.76 7.24 87.66 0.63 23.40 16 13 O -0.60 -32.82 11.55 -3.07 -0.04 -32.85 16 14 C -0.18 -6.33 4.81 -11.54 -0.06 -6.38 16 15 H 0.13 4.17 6.52 -2.39 -0.02 4.15 16 16 C -0.13 -3.68 9.29 30.62 0.28 -3.39 16 17 C -0.09 -2.84 6.05 -11.51 -0.07 -2.91 16 18 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 19 C -0.05 -1.91 4.35 -19.86 -0.09 -1.99 16 20 C -0.06 -2.29 6.19 22.27 0.14 -2.15 16 21 C -0.15 -5.54 10.05 22.27 0.22 -5.32 16 22 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 23 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 24 C -0.13 -4.31 9.74 22.27 0.22 -4.10 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.85 7.39 -2.39 -0.02 1.83 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.45 6.25 -2.38 -0.01 2.43 16 29 H 0.08 4.08 5.36 -2.39 -0.01 4.07 16 30 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.08 2.62 6.17 -2.39 -0.01 2.60 16 33 H 0.10 3.88 5.80 -2.91 -0.02 3.86 16 34 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -69.16 301.99 5.79 -63.38 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 1.06 Total: 26.62 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 4.11 Total: -28.99 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.38 Total: -73.44 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.04 Total: -32.85 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -69.16 5.79 -63.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.381 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds