Wall clock time and date at job start Mon Mar 30 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47381 * 2 1 4 4 C 1.50698 * 109.47070 * 120.00312 * 2 1 3 5 5 N 1.30099 * 124.98204 * 74.97795 * 4 2 1 6 6 C 1.35891 * 109.73591 * 180.02562 * 5 4 2 7 7 C 1.39679 * 133.50095 * 180.02562 * 6 5 4 8 8 C 1.37722 * 119.77739 * 179.26691 * 7 6 5 9 9 C 1.38723 * 120.51377 * 0.61717 * 8 7 6 10 10 C 1.37961 * 120.43849 * 359.59443 * 9 8 7 11 11 C 1.38704 * 119.83221 * 0.02562 * 10 9 8 12 12 N 1.36542 * 124.98231 * 254.99711 * 4 2 1 13 13 C 1.37308 * 126.39716 * 359.96032 * 12 4 2 14 14 H 1.08003 * 119.99760 * 39.52542 * 13 12 4 15 15 C 1.38900 * 119.99969 * 219.52967 * 13 12 4 16 16 N 1.31385 * 120.00509 * 203.91955 * 15 13 12 17 17 Si 1.86805 * 120.00199 * 23.91906 * 15 13 12 18 18 H 1.48496 * 109.47251 * 264.62096 * 17 15 13 19 19 H 1.48501 * 109.47017 * 24.62437 * 17 15 13 20 20 H 1.48504 * 109.46943 * 144.61758 * 17 15 13 21 21 N 1.46908 * 109.47285 * 240.00051 * 2 1 3 22 22 C 1.46894 * 110.99864 * 306.05244 * 21 2 1 23 23 C 1.46905 * 110.99477 * 70.00176 * 21 2 1 24 24 H 1.08998 * 109.47049 * 299.99925 * 1 2 3 25 25 H 1.08996 * 109.46974 * 59.99618 * 1 2 3 26 26 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.11026 * 359.94951 * 7 6 5 28 28 H 1.07999 * 119.74481 * 180.25457 * 8 7 6 29 29 H 1.08001 * 119.77940 * 179.60906 * 9 8 7 30 30 H 1.08001 * 120.08420 * 179.97438 * 10 9 8 31 31 H 0.96994 * 120.00958 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.47970 * 59.99582 * 22 21 2 33 33 H 1.09001 * 109.47268 * 179.97438 * 22 21 2 34 34 H 1.09006 * 109.47047 * 299.99058 * 22 21 2 35 35 H 1.09000 * 109.47340 * 60.00124 * 23 21 2 36 36 H 1.08999 * 109.46611 * 180.02562 * 23 21 2 37 37 H 1.09005 * 109.47113 * 299.99825 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.0204 -1.9997 1.4044 6 6 2.5443 -2.3035 2.6209 7 6 2.7654 -3.5039 3.3000 8 6 3.3432 -3.4861 4.5500 9 6 3.6960 -2.2841 5.1459 10 6 3.4804 -1.0894 4.4906 11 6 2.9067 -1.0887 3.2278 12 7 2.5663 -0.0955 2.3263 13 6 2.7384 1.2558 2.4993 14 1 1.9801 1.9448 2.1578 15 6 3.8878 1.7364 3.1134 16 7 3.8766 2.9118 3.7004 17 14 5.4497 0.7117 3.1049 18 1 5.5378 -0.0669 4.3663 19 1 5.4242 -0.2199 1.9488 20 1 6.6288 1.6076 2.9926 21 7 2.0197 -0.6925 -1.1995 22 6 1.4343 -2.0354 -1.3079 23 6 1.7530 0.0974 -2.4091 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 2.4943 -4.4436 2.8417 28 1 3.5177 -4.4149 5.0729 29 1 4.1426 -2.2837 6.1293 30 1 3.7569 -0.1568 4.9601 31 1 4.6791 3.2474 4.1296 32 1 0.3490 -1.9549 -1.3695 33 1 1.8133 -2.5257 -2.2046 34 1 1.7059 -2.6221 -0.4303 35 1 2.2562 1.0612 -2.3320 36 1 2.1252 -0.4385 -3.2822 37 1 0.6792 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071685313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:37 Heat of formation + Delta-G solvation = 89.706427 kcal Electronic energy + Delta-G solvation = -19950.512033 eV Core-core repulsion = 17115.070076 eV Total energy + Delta-G solvation = -2835.441957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18814 -37.78174 -36.15986 -34.08237 -31.86147 -30.73381 -29.40695 -27.97222 -27.05894 -25.24661 -24.88076 -22.24686 -21.39892 -20.34513 -18.88125 -18.01570 -16.57381 -15.75914 -15.41887 -14.87340 -14.61164 -14.35650 -13.96754 -13.79012 -13.29951 -13.19903 -12.93097 -12.66512 -12.10298 -12.03032 -11.62128 -11.50153 -11.31397 -11.26970 -11.11449 -11.06007 -10.66451 -10.59555 -10.32649 -10.07064 -9.85919 -8.89345 -8.71334 -7.89392 -7.41332 -7.17899 -6.93781 -4.59472 1.82673 2.44803 2.99061 3.12080 3.26324 3.65477 3.91425 4.05373 4.43333 4.77514 4.78829 4.98942 5.40679 5.48547 5.58790 5.65019 5.70556 5.72333 5.85518 5.91285 5.98718 6.03347 6.10610 6.22606 6.28932 6.38707 6.41309 6.54591 6.61366 6.84354 6.92612 7.19783 7.28897 7.40408 7.47721 7.52787 7.61578 7.86968 7.94509 8.55981 9.00221 9.10505 10.11902 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.010243 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.646275 B = 2733.033087 C = 3775.153638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.173 3.827 3 H 0.102 0.898 4 C 0.243 3.757 5 N -0.513 5.513 6 C 0.036 3.964 7 C -0.080 4.080 8 C -0.143 4.143 9 C -0.141 4.141 10 C -0.089 4.089 11 C 0.011 3.989 12 N -0.300 5.300 13 C -0.361 4.361 14 H 0.120 0.880 15 C 0.088 3.912 16 N -0.824 5.824 17 Si 0.865 3.135 18 H -0.246 1.246 19 H -0.256 1.256 20 H -0.281 1.281 21 N -0.531 5.531 22 C 0.004 3.996 23 C 0.024 3.976 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.286 0.714 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 -5.506 -4.155 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.063 3.937 3 H 0.120 0.880 4 C -0.019 4.019 5 N -0.235 5.235 6 C -0.088 4.088 7 C -0.100 4.100 8 C -0.164 4.164 9 C -0.162 4.162 10 C -0.109 4.109 11 C -0.103 4.103 12 N 0.029 4.971 13 C -0.488 4.488 14 H 0.137 0.863 15 C -0.126 4.126 16 N -0.453 5.453 17 Si 0.689 3.311 18 H -0.170 1.170 19 H -0.180 1.180 20 H -0.207 1.207 21 N -0.255 5.255 22 C -0.143 4.143 23 C -0.124 4.124 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.031 -5.719 -4.590 7.609 hybrid contribution 0.301 0.609 0.534 0.864 sum -1.730 -5.110 -4.056 6.750 Atomic orbital electron populations 1.22376 0.96457 1.02812 1.02017 1.19800 0.92306 0.96894 0.84731 0.88001 1.22867 1.01963 0.87926 0.89139 1.69965 1.25629 1.11666 1.16215 1.18934 1.03905 0.92842 0.93078 1.19980 1.00706 0.94999 0.94304 1.20578 1.02914 0.97205 0.95706 1.20559 1.04152 0.91793 0.99711 1.20091 0.99712 0.98552 0.92532 1.18918 1.07457 0.89805 0.94112 1.41369 1.40392 1.05753 1.09611 1.19188 1.07316 0.78529 1.43741 0.86281 1.25340 0.98807 0.95879 0.92593 1.69764 1.30288 1.18849 1.26377 0.87075 0.81555 0.80605 0.81868 1.17007 1.17979 1.20731 1.61991 1.58844 1.03368 1.01254 1.22884 0.96311 0.90683 1.04461 1.22398 0.98876 0.98527 0.92590 0.91838 0.92328 0.91457 0.86809 0.86824 0.86813 0.86489 0.90386 0.96098 0.93076 0.86575 0.91523 0.91676 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.42 37.16 0.31 -2.60 16 2 C 0.17 3.33 2.66 -68.86 -0.18 3.15 16 3 H 0.10 2.03 7.32 -51.93 -0.38 1.65 16 4 C 0.24 5.62 6.64 -154.36 -1.03 4.60 16 5 N -0.51 -11.83 8.28 -8.10 -0.07 -11.90 16 6 C 0.04 0.85 7.23 -84.66 -0.61 0.24 16 7 C -0.08 -1.59 10.10 -39.23 -0.40 -1.99 16 8 C -0.14 -2.58 10.02 -39.59 -0.40 -2.98 16 9 C -0.14 -2.74 10.03 -39.50 -0.40 -3.14 16 10 C -0.09 -2.02 6.89 -39.51 -0.27 -2.30 16 11 C 0.01 0.28 5.28 -83.86 -0.44 -0.16 16 12 N -0.30 -7.56 2.45 -56.65 -0.14 -7.70 16 13 C -0.36 -9.42 9.52 -14.85 -0.14 -9.56 16 14 H 0.12 3.16 7.98 -52.48 -0.42 2.74 16 15 C 0.09 2.29 4.91 -17.50 -0.09 2.21 16 16 N -0.82 -21.64 13.95 55.49 0.77 -20.87 16 17 Si 0.87 20.69 24.51 -169.99 -4.17 16.53 16 18 H -0.25 -5.59 5.49 56.52 0.31 -5.28 16 19 H -0.26 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 N -0.53 -9.43 4.96 -244.58 -1.21 -10.64 16 22 C 0.00 0.07 8.76 60.06 0.53 0.60 16 23 C 0.02 0.34 9.36 60.07 0.56 0.90 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 26 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 27 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.12 2.73 5.79 -52.49 -0.30 2.43 16 31 H 0.29 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.02 0.32 6.21 -51.93 -0.32 -0.01 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.12 2.23 5.17 -51.93 -0.27 1.96 16 35 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.02 0.31 6.62 -51.93 -0.34 -0.03 16 LS Contribution 290.76 15.07 4.38 4.38 Total: -1.00 -28.42 290.76 -7.87 -36.29 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.90 Total: 4.94 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.55 Total: -11.03 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.64 Total: -51.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.17 Total: 16.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.42 -7.87 -36.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071685313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.998 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds