Wall clock time and date at job start Mon Mar 30 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47381 * 2 1 4 4 C 1.50698 * 109.47070 * 120.00312 * 2 1 3 5 5 N 1.30099 * 124.98204 * 74.97795 * 4 2 1 6 6 C 1.35891 * 109.73591 * 180.02562 * 5 4 2 7 7 C 1.39679 * 133.50095 * 180.02562 * 6 5 4 8 8 C 1.37722 * 119.77739 * 179.26691 * 7 6 5 9 9 C 1.38723 * 120.51377 * 0.61717 * 8 7 6 10 10 C 1.37961 * 120.43849 * 359.59443 * 9 8 7 11 11 C 1.38704 * 119.83221 * 0.02562 * 10 9 8 12 12 N 1.36542 * 124.98231 * 254.99711 * 4 2 1 13 13 C 1.37308 * 126.39716 * 359.96032 * 12 4 2 14 14 H 1.08003 * 119.99760 * 39.52542 * 13 12 4 15 15 C 1.38900 * 119.99969 * 219.52967 * 13 12 4 16 16 N 1.31385 * 120.00509 * 203.91955 * 15 13 12 17 17 Si 1.86805 * 120.00199 * 23.91906 * 15 13 12 18 18 H 1.48496 * 109.47251 * 264.62096 * 17 15 13 19 19 H 1.48501 * 109.47017 * 24.62437 * 17 15 13 20 20 H 1.48504 * 109.46943 * 144.61758 * 17 15 13 21 21 N 1.46908 * 109.47285 * 240.00051 * 2 1 3 22 22 C 1.46894 * 110.99864 * 306.05244 * 21 2 1 23 23 C 1.46905 * 110.99477 * 70.00176 * 21 2 1 24 24 H 1.08998 * 109.47049 * 299.99925 * 1 2 3 25 25 H 1.08996 * 109.46974 * 59.99618 * 1 2 3 26 26 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.11026 * 359.94951 * 7 6 5 28 28 H 1.07999 * 119.74481 * 180.25457 * 8 7 6 29 29 H 1.08001 * 119.77940 * 179.60906 * 9 8 7 30 30 H 1.08001 * 120.08420 * 179.97438 * 10 9 8 31 31 H 0.96994 * 120.00958 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.47970 * 59.99582 * 22 21 2 33 33 H 1.09001 * 109.47268 * 179.97438 * 22 21 2 34 34 H 1.09006 * 109.47047 * 299.99058 * 22 21 2 35 35 H 1.09000 * 109.47340 * 60.00124 * 23 21 2 36 36 H 1.08999 * 109.46611 * 180.02562 * 23 21 2 37 37 H 1.09005 * 109.47113 * 299.99825 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.0204 -1.9997 1.4044 6 6 2.5443 -2.3035 2.6209 7 6 2.7654 -3.5039 3.3000 8 6 3.3432 -3.4861 4.5500 9 6 3.6960 -2.2841 5.1459 10 6 3.4804 -1.0894 4.4906 11 6 2.9067 -1.0887 3.2278 12 7 2.5663 -0.0955 2.3263 13 6 2.7384 1.2558 2.4993 14 1 1.9801 1.9448 2.1578 15 6 3.8878 1.7364 3.1134 16 7 3.8766 2.9118 3.7004 17 14 5.4497 0.7117 3.1049 18 1 5.5378 -0.0669 4.3663 19 1 5.4242 -0.2199 1.9488 20 1 6.6288 1.6076 2.9926 21 7 2.0197 -0.6925 -1.1995 22 6 1.4343 -2.0354 -1.3079 23 6 1.7530 0.0974 -2.4091 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 2.4943 -4.4436 2.8417 28 1 3.5177 -4.4149 5.0729 29 1 4.1426 -2.2837 6.1293 30 1 3.7569 -0.1568 4.9601 31 1 4.6791 3.2474 4.1296 32 1 0.3490 -1.9549 -1.3695 33 1 1.8133 -2.5257 -2.2046 34 1 1.7059 -2.6221 -0.4303 35 1 2.2562 1.0612 -2.3320 36 1 2.1252 -0.4385 -3.2822 37 1 0.6792 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071685313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:37 Heat of formation + Delta-G solvation = 72.033883 kcal Electronic energy + Delta-G solvation = -19951.278372 eV Core-core repulsion = 17115.070076 eV Total energy + Delta-G solvation = -2836.208296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.90632 -39.19891 -37.73305 -35.93738 -33.72226 -32.14770 -31.04286 -29.53566 -28.30939 -27.11648 -26.28292 -23.74891 -23.06924 -21.98007 -20.57408 -19.77981 -18.18338 -17.59237 -16.86118 -16.33990 -16.28440 -16.06238 -15.45324 -15.25739 -14.92898 -14.87320 -14.49193 -14.42816 -13.51222 -13.33277 -13.25246 -13.10780 -12.84029 -12.72305 -12.60840 -12.41326 -12.34215 -12.13990 -12.02038 -11.76074 -11.69135 -10.74688 -10.45078 -9.23463 -9.10519 -8.91148 -8.82858 -6.57890 0.17966 0.81527 1.10293 1.17916 1.30680 1.93110 1.99501 2.36277 2.64063 3.10941 3.27592 3.39168 3.87814 4.06796 4.13013 4.29346 4.35295 4.45062 4.49679 4.59155 4.67063 4.71801 4.73325 4.75144 4.86942 4.91675 5.01074 5.04764 5.18881 5.24276 5.42403 5.50440 5.68511 5.71580 5.94777 5.98513 6.07921 6.24359 6.29380 6.62264 7.18100 7.30318 8.20093 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.010243 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.646275 B = 2733.033087 C = 3775.153638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 H 0.086 0.914 4 C 0.236 3.764 5 N -0.513 5.513 6 C 0.007 3.993 7 C -0.084 4.084 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.126 4.126 11 C -0.015 4.015 12 N -0.325 5.325 13 C -0.371 4.371 14 H 0.099 0.901 15 C 0.064 3.936 16 N -0.855 5.855 17 Si 0.911 3.089 18 H -0.227 1.227 19 H -0.291 1.291 20 H -0.270 1.270 21 N -0.553 5.553 22 C 0.010 3.990 23 C 0.025 3.975 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.151 0.849 30 H 0.103 0.897 31 H 0.293 0.707 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -7.816 -4.056 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 H 0.104 0.896 4 C -0.027 4.027 5 N -0.236 5.236 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.149 4.149 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.128 4.128 12 N 0.001 4.999 13 C -0.499 4.499 14 H 0.117 0.883 15 C -0.148 4.148 16 N -0.486 5.486 17 Si 0.734 3.266 18 H -0.150 1.150 19 H -0.217 1.217 20 H -0.196 1.196 21 N -0.277 5.277 22 C -0.138 4.138 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.169 0.831 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.835 -8.038 -4.471 9.379 hybrid contribution 0.187 1.142 0.499 1.260 sum -1.647 -6.896 -3.972 8.127 Atomic orbital electron populations 1.22262 0.94339 1.02962 1.02795 1.19837 0.93842 0.95730 0.84420 0.89606 1.23687 1.00813 0.88324 0.89879 1.70066 1.25723 1.11512 1.16257 1.19582 1.04668 0.93882 0.93405 1.20458 1.00160 0.94799 0.94933 1.21135 1.00288 0.98666 0.94765 1.21106 1.01736 0.90937 1.00652 1.20257 1.02150 0.99579 0.92669 1.19406 1.08177 0.90195 0.95061 1.41462 1.42215 1.05436 1.10791 1.19038 1.07173 0.79276 1.44373 0.88299 1.25708 1.00147 0.96468 0.92438 1.69780 1.31203 1.19829 1.27773 0.86429 0.79860 0.79242 0.81027 1.15018 1.21732 1.19572 1.61952 1.59660 1.04239 1.01835 1.22773 0.97110 0.89869 1.04014 1.22472 1.00122 0.98231 0.91425 0.93177 0.89385 0.91469 0.84102 0.81781 0.83114 0.87914 0.89668 0.94836 0.91096 0.89298 0.91694 0.89759 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 8.42 71.98 0.61 -4.74 16 2 C 0.17 6.75 2.66 44.17 0.12 6.87 16 3 H 0.09 3.59 7.32 -2.39 -0.02 3.57 16 4 C 0.24 11.19 6.64 137.76 0.91 12.11 16 5 N -0.51 -23.86 8.28 -179.55 -1.49 -25.35 16 6 C 0.01 0.34 7.23 39.43 0.28 0.62 16 7 C -0.08 -3.10 10.10 22.50 0.23 -2.87 16 8 C -0.13 -4.05 10.02 22.26 0.22 -3.83 16 9 C -0.12 -4.40 10.03 22.32 0.22 -4.17 16 10 C -0.13 -5.67 6.89 22.32 0.15 -5.52 16 11 C -0.02 -0.77 5.28 38.78 0.20 -0.56 16 12 N -0.33 -17.01 2.45 -333.13 -0.81 -17.83 16 13 C -0.37 -20.39 9.52 83.99 0.80 -19.59 16 14 H 0.10 5.62 7.98 -2.91 -0.02 5.60 16 15 C 0.06 3.44 4.91 84.92 0.42 3.85 16 16 N -0.86 -46.29 13.95 21.65 0.30 -45.99 16 17 Si 0.91 43.72 24.51 68.60 1.68 45.40 16 18 H -0.23 -10.06 5.49 99.48 0.55 -9.51 16 19 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 N -0.55 -19.26 4.96 -927.70 -4.60 -23.86 16 22 C 0.01 0.32 8.76 127.69 1.12 1.44 16 23 C 0.02 0.65 9.36 127.69 1.20 1.84 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 2.31 6.69 -2.39 -0.02 2.29 16 26 H 0.07 2.17 6.33 -2.39 -0.02 2.16 16 27 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.10 4.83 5.79 -2.91 -0.02 4.81 16 31 H 0.29 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.03 0.96 6.21 -2.39 -0.01 0.94 16 33 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 34 H 0.09 3.36 5.17 -2.38 -0.01 3.35 16 35 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 36 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 37 H 0.04 0.94 6.62 -2.38 -0.02 0.93 16 Total: -1.00 -63.98 290.76 2.48 -61.50 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.91 Total: 20.67 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 6.49 Total: -14.55 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -6.60 Total: -113.02 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.68 Total: 45.40 kcal Total: -63.98 2.48 -61.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071685313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.534 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds