Wall clock time and date at job start Mon Mar 30 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46913 * 2 1 4 4 C 1.50700 * 109.47162 * 240.00355 * 2 1 3 5 5 N 1.30094 * 124.97791 * 285.42244 * 4 2 1 6 6 C 1.35897 * 109.73508 * 180.02562 * 5 4 2 7 7 C 1.39679 * 133.49916 * 179.97438 * 6 5 4 8 8 C 1.37716 * 119.77321 * 180.27573 * 7 6 5 9 9 C 1.38724 * 120.51753 * 359.41351 * 8 7 6 10 10 C 1.37958 * 120.43634 * 0.60828 * 9 8 7 11 11 C 1.38703 * 119.83138 * 359.69575 * 10 9 8 12 12 N 1.36533 * 124.98314 * 105.44283 * 4 2 1 13 13 C 1.37314 * 126.39891 * 359.95488 * 12 4 2 14 14 H 1.07999 * 119.99625 * 320.01258 * 13 12 4 15 15 C 1.38903 * 119.99732 * 140.00607 * 13 12 4 16 16 N 1.31387 * 120.00477 * 343.86497 * 15 13 12 17 17 Si 1.86810 * 119.99908 * 163.86318 * 15 13 12 18 18 H 1.48500 * 109.46887 * 89.99909 * 17 15 13 19 19 H 1.48496 * 109.47051 * 210.00355 * 17 15 13 20 20 H 1.48499 * 109.46761 * 329.99999 * 17 15 13 21 21 N 1.46895 * 109.46971 * 120.00352 * 2 1 3 22 22 C 1.46904 * 110.99971 * 178.93092 * 21 2 1 23 23 C 1.46897 * 111.00127 * 302.88426 * 21 2 1 24 24 H 1.09006 * 109.47010 * 59.99807 * 1 2 3 25 25 H 1.08994 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47074 * 299.99755 * 1 2 3 27 27 H 1.07998 * 120.11517 * 0.02562 * 7 6 5 28 28 H 1.08000 * 119.73935 * 179.72260 * 8 7 6 29 29 H 1.08008 * 119.78099 * 180.30320 * 9 8 7 30 30 H 1.08002 * 120.08300 * 179.66292 * 10 9 8 31 31 H 0.96995 * 120.00101 * 185.06718 * 16 15 13 32 32 H 1.09004 * 109.46734 * 59.99980 * 22 21 2 33 33 H 1.08996 * 109.47061 * 179.97438 * 22 21 2 34 34 H 1.08991 * 109.47018 * 299.99949 * 22 21 2 35 35 H 1.09007 * 109.47210 * 66.04974 * 23 21 2 36 36 H 1.08997 * 109.47462 * 186.05323 * 23 21 2 37 37 H 1.09000 * 109.47282 * 306.05192 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.0137 -1.9990 -1.4076 6 6 2.5409 -2.3030 -2.6227 7 6 2.7578 -3.5030 -3.3037 8 6 3.3323 -3.4850 -4.5552 9 6 3.6865 -2.2830 -5.1504 10 6 3.4794 -1.0889 -4.4912 11 6 2.9076 -1.0886 -3.2275 12 7 2.5742 -0.0958 -2.3227 13 6 2.7539 1.2549 -2.4922 14 1 1.9943 1.9467 -2.1593 15 6 3.9128 1.7314 -3.0917 16 7 4.9616 0.9489 -3.2086 17 14 3.9800 3.4852 -3.7318 18 1 4.4627 4.3869 -2.6552 19 1 4.9081 3.5545 -4.8890 20 1 2.6224 3.9081 -4.1601 21 7 2.0197 -0.6925 1.1994 22 6 3.4879 -0.7344 1.2206 23 6 1.4931 -0.0675 2.4200 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.4797 -4.4422 -2.8487 28 1 3.5039 -4.4135 -5.0793 29 1 4.1318 -2.2824 -6.1344 30 1 3.7622 -0.1569 -4.9578 31 1 5.7938 1.3024 -3.5597 32 1 3.8804 0.2826 1.2195 33 1 3.8237 -1.2520 2.1191 34 1 3.8491 -1.2642 0.3392 35 1 0.4129 -0.2072 2.4628 36 1 1.9541 -0.5298 3.2929 37 1 1.7215 0.9982 2.4101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071685314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:39 Heat of formation + Delta-G solvation = 76.012239 kcal Electronic energy + Delta-G solvation = -19872.880248 eV Core-core repulsion = 17036.844466 eV Total energy + Delta-G solvation = -2836.035782 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80716 -37.44038 -35.84018 -34.05101 -31.21970 -30.94381 -29.07166 -28.12586 -26.77142 -25.20729 -24.16512 -22.12635 -21.03674 -20.40020 -18.88587 -17.63713 -16.33104 -15.44623 -15.31525 -14.71667 -14.67154 -14.46095 -13.70571 -13.55446 -13.06834 -12.92586 -12.70161 -12.06828 -11.96173 -11.90017 -11.58282 -11.41787 -11.33755 -11.16489 -10.96525 -10.85216 -10.76763 -10.67580 -10.28674 -10.25711 -9.46863 -8.90484 -8.55723 -7.83969 -7.15898 -6.88889 -6.68879 -4.57131 2.14921 2.75176 2.96103 2.99054 3.03039 3.72891 3.98240 4.29558 4.61720 4.78563 5.11662 5.24953 5.51566 5.61127 5.70548 5.75522 5.90201 5.96718 5.98451 6.03590 6.09157 6.11934 6.24458 6.29331 6.58025 6.62257 6.67411 6.75609 6.78232 6.96588 7.08048 7.25784 7.44658 7.52584 7.56961 7.66132 7.87806 8.08904 8.20038 8.63490 9.26526 9.44156 10.22495 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.010773 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.414676 B = 2598.403972 C = 4037.305960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.177 3.823 3 H 0.058 0.942 4 C 0.225 3.775 5 N -0.502 5.502 6 C 0.023 3.977 7 C -0.086 4.086 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.047 4.047 11 C 0.053 3.947 12 N -0.289 5.289 13 C -0.365 4.365 14 H 0.104 0.896 15 C 0.058 3.942 16 N -0.824 5.824 17 Si 0.925 3.075 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.262 1.262 21 N -0.526 5.526 22 C 0.033 3.967 23 C 0.025 3.975 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.280 0.720 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 0.695 3.215 4.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.076 0.924 4 C -0.037 4.037 5 N -0.224 5.224 6 C -0.101 4.101 7 C -0.106 4.106 8 C -0.168 4.168 9 C -0.176 4.176 10 C -0.068 4.068 11 C -0.063 4.063 12 N 0.039 4.961 13 C -0.493 4.493 14 H 0.121 0.879 15 C -0.155 4.155 16 N -0.453 5.453 17 Si 0.749 3.251 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.186 1.186 21 N -0.250 5.250 22 C -0.115 4.115 23 C -0.123 4.123 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.315 -0.189 3.664 4.944 hybrid contribution 1.069 2.347 -0.881 2.725 sum -2.246 2.158 2.783 4.177 Atomic orbital electron populations 1.21822 0.93583 1.03040 1.01115 1.19697 0.94855 0.93909 0.84813 0.92395 1.22783 1.02892 0.88303 0.89739 1.70231 1.24500 1.11618 1.16047 1.18993 1.04572 0.93116 0.93382 1.19883 1.01446 0.94889 0.94340 1.20481 1.03609 0.96989 0.95728 1.20549 1.05148 0.92168 0.99731 1.19914 0.97077 0.97523 0.92255 1.18728 1.05264 0.88826 0.93442 1.41096 1.39898 1.05563 1.09515 1.19549 1.05442 0.79798 1.44490 0.87863 1.25592 0.94236 1.00448 0.95190 1.69971 1.00966 1.36726 1.37684 0.85953 0.79229 0.80820 0.79062 1.19615 1.19963 1.18625 1.61842 1.09179 1.53095 1.00915 1.22291 0.86947 0.99693 1.02618 1.22412 1.00933 0.96526 0.92471 0.92354 0.91099 0.92498 0.87400 0.87485 0.87555 0.87095 0.90904 0.96080 0.92160 0.90711 0.91255 0.91753 0.96040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.85 37.16 0.33 -2.00 16 2 C 0.18 3.54 2.41 -68.87 -0.17 3.38 16 3 H 0.06 1.20 7.40 -51.93 -0.38 0.81 16 4 C 0.23 5.45 5.15 -154.37 -0.79 4.65 16 5 N -0.50 -12.67 11.10 -8.11 -0.09 -12.76 16 6 C 0.02 0.59 7.23 -84.66 -0.61 -0.02 16 7 C -0.09 -1.89 10.10 -39.23 -0.40 -2.29 16 8 C -0.15 -2.95 10.02 -39.59 -0.40 -3.35 16 9 C -0.16 -3.26 10.03 -39.50 -0.40 -3.66 16 10 C -0.05 -1.15 8.70 -39.51 -0.34 -1.50 16 11 C 0.05 1.39 6.11 -83.86 -0.51 0.87 16 12 N -0.29 -7.54 2.81 -56.65 -0.16 -7.70 16 13 C -0.36 -9.23 9.10 -14.85 -0.14 -9.37 16 14 H 0.10 2.46 7.81 -52.49 -0.41 2.05 16 15 C 0.06 1.43 4.63 -17.50 -0.08 1.35 16 16 N -0.82 -21.32 11.08 55.49 0.61 -20.70 16 17 Si 0.93 18.52 29.59 -169.99 -5.03 13.49 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 N -0.53 -9.69 4.86 -244.59 -1.19 -10.88 16 22 C 0.03 0.62 9.29 60.07 0.56 1.18 16 23 C 0.02 0.35 8.99 60.06 0.54 0.89 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.06 0.78 6.50 -51.93 -0.34 0.45 16 27 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.11 1.91 8.06 -52.48 -0.42 1.48 16 30 H 0.11 2.75 6.72 -52.49 -0.35 2.40 16 31 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.07 1.70 6.94 -51.93 -0.36 1.34 16 35 H 0.07 0.88 6.61 -51.93 -0.34 0.54 16 36 H 0.06 0.80 8.01 -51.93 -0.42 0.39 16 37 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -29.07 304.43 -8.79 -37.86 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.12 Total: 5.96 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.41 Total: -9.85 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.82 Total: -52.04 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.07 -8.79 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071685314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.868 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds