Wall clock time and date at job start Mon Mar 30 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46913 * 2 1 4 4 C 1.50700 * 109.47162 * 240.00355 * 2 1 3 5 5 N 1.30094 * 124.97791 * 285.42244 * 4 2 1 6 6 C 1.35897 * 109.73508 * 180.02562 * 5 4 2 7 7 C 1.39679 * 133.49916 * 179.97438 * 6 5 4 8 8 C 1.37716 * 119.77321 * 180.27573 * 7 6 5 9 9 C 1.38724 * 120.51753 * 359.41351 * 8 7 6 10 10 C 1.37958 * 120.43634 * 0.60828 * 9 8 7 11 11 C 1.38703 * 119.83138 * 359.69575 * 10 9 8 12 12 N 1.36533 * 124.98314 * 105.44283 * 4 2 1 13 13 C 1.37314 * 126.39891 * 359.95488 * 12 4 2 14 14 H 1.07999 * 119.99625 * 320.01258 * 13 12 4 15 15 C 1.38903 * 119.99732 * 140.00607 * 13 12 4 16 16 N 1.31387 * 120.00477 * 343.86497 * 15 13 12 17 17 Si 1.86810 * 119.99908 * 163.86318 * 15 13 12 18 18 H 1.48500 * 109.46887 * 89.99909 * 17 15 13 19 19 H 1.48496 * 109.47051 * 210.00355 * 17 15 13 20 20 H 1.48499 * 109.46761 * 329.99999 * 17 15 13 21 21 N 1.46895 * 109.46971 * 120.00352 * 2 1 3 22 22 C 1.46904 * 110.99971 * 178.93092 * 21 2 1 23 23 C 1.46897 * 111.00127 * 302.88426 * 21 2 1 24 24 H 1.09006 * 109.47010 * 59.99807 * 1 2 3 25 25 H 1.08994 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47074 * 299.99755 * 1 2 3 27 27 H 1.07998 * 120.11517 * 0.02562 * 7 6 5 28 28 H 1.08000 * 119.73935 * 179.72260 * 8 7 6 29 29 H 1.08008 * 119.78099 * 180.30320 * 9 8 7 30 30 H 1.08002 * 120.08300 * 179.66292 * 10 9 8 31 31 H 0.96995 * 120.00101 * 185.06718 * 16 15 13 32 32 H 1.09004 * 109.46734 * 59.99980 * 22 21 2 33 33 H 1.08996 * 109.47061 * 179.97438 * 22 21 2 34 34 H 1.08991 * 109.47018 * 299.99949 * 22 21 2 35 35 H 1.09007 * 109.47210 * 66.04974 * 23 21 2 36 36 H 1.08997 * 109.47462 * 186.05323 * 23 21 2 37 37 H 1.09000 * 109.47282 * 306.05192 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.0137 -1.9990 -1.4076 6 6 2.5409 -2.3030 -2.6227 7 6 2.7578 -3.5030 -3.3037 8 6 3.3323 -3.4850 -4.5552 9 6 3.6865 -2.2830 -5.1504 10 6 3.4794 -1.0889 -4.4912 11 6 2.9076 -1.0886 -3.2275 12 7 2.5742 -0.0958 -2.3227 13 6 2.7539 1.2549 -2.4922 14 1 1.9943 1.9467 -2.1593 15 6 3.9128 1.7314 -3.0917 16 7 4.9616 0.9489 -3.2086 17 14 3.9800 3.4852 -3.7318 18 1 4.4627 4.3869 -2.6552 19 1 4.9081 3.5545 -4.8890 20 1 2.6224 3.9081 -4.1601 21 7 2.0197 -0.6925 1.1994 22 6 3.4879 -0.7344 1.2206 23 6 1.4931 -0.0675 2.4200 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.4797 -4.4422 -2.8487 28 1 3.5039 -4.4135 -5.0793 29 1 4.1318 -2.2824 -6.1344 30 1 3.7622 -0.1569 -4.9578 31 1 5.7938 1.3024 -3.5597 32 1 3.8804 0.2826 1.2195 33 1 3.8237 -1.2520 2.1191 34 1 3.8491 -1.2642 0.3392 35 1 0.4129 -0.2072 2.4628 36 1 1.9541 -0.5298 3.2929 37 1 1.7215 0.9982 2.4101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071685314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:39 Heat of formation + Delta-G solvation = 58.150898 kcal Electronic energy + Delta-G solvation = -19873.654774 eV Core-core repulsion = 17036.844466 eV Total energy + Delta-G solvation = -2836.810308 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.60851 -38.94950 -37.51874 -35.89248 -33.07966 -32.44036 -30.83707 -29.71879 -28.20845 -27.08909 -25.64568 -23.70765 -22.81530 -22.13857 -20.59175 -19.43768 -18.05456 -17.27216 -16.85770 -16.35497 -16.28025 -15.95041 -15.35972 -15.14712 -14.76509 -14.62371 -14.30798 -13.70902 -13.44038 -13.30719 -13.21350 -12.99922 -12.87568 -12.68551 -12.53033 -12.39133 -12.32424 -12.11271 -12.00542 -11.92274 -11.27726 -10.75084 -10.43773 -9.27370 -8.98486 -8.69408 -8.51526 -6.49942 0.37520 1.02223 1.32270 1.36754 1.47299 2.03978 2.22830 2.67133 2.81307 3.16815 3.32023 3.57409 4.03190 4.20994 4.22131 4.30272 4.38937 4.44650 4.54720 4.64518 4.72706 4.76687 4.81099 4.89448 4.97345 4.98308 5.02471 5.07056 5.14752 5.27407 5.32999 5.48439 5.80063 5.88801 5.96966 6.09456 6.16835 6.27617 6.42580 6.76913 7.42116 7.58701 8.39871 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.010773 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.414676 B = 2598.403972 C = 4037.305960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.177 3.823 3 H 0.046 0.954 4 C 0.219 3.781 5 N -0.521 5.521 6 C -0.009 4.009 7 C -0.097 4.097 8 C -0.134 4.134 9 C -0.144 4.144 10 C -0.077 4.077 11 C 0.021 3.979 12 N -0.310 5.310 13 C -0.389 4.389 14 H 0.108 0.892 15 C 0.020 3.980 16 N -0.860 5.860 17 Si 0.996 3.004 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.256 1.256 21 N -0.536 5.536 22 C 0.043 3.957 23 C 0.024 3.976 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.129 0.871 28 H 0.155 0.845 29 H 0.142 0.858 30 H 0.096 0.904 31 H 0.282 0.718 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 0.669 3.365 4.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.066 3.934 3 H 0.064 0.936 4 C -0.044 4.044 5 N -0.243 5.243 6 C -0.132 4.132 7 C -0.117 4.117 8 C -0.154 4.154 9 C -0.164 4.164 10 C -0.098 4.098 11 C -0.094 4.094 12 N 0.018 4.982 13 C -0.517 4.517 14 H 0.126 0.874 15 C -0.189 4.189 16 N -0.490 5.490 17 Si 0.816 3.184 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.180 1.180 21 N -0.261 5.261 22 C -0.106 4.106 23 C -0.123 4.123 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.173 0.827 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.769 -0.230 3.825 5.375 hybrid contribution 1.215 2.232 -0.925 2.704 sum -2.554 2.001 2.900 4.352 Atomic orbital electron populations 1.21754 0.91199 1.02851 1.02651 1.19827 0.96612 0.92740 0.84175 0.93598 1.23586 1.01879 0.88398 0.90532 1.70200 1.25438 1.12317 1.16372 1.19582 1.05518 0.94242 0.93828 1.20298 1.01571 0.94644 0.95170 1.20975 1.01189 0.98448 0.94791 1.21015 1.03303 0.91350 1.00737 1.20039 0.98937 0.98390 0.92409 1.19208 1.06316 0.89435 0.94441 1.41352 1.40744 1.05916 1.10216 1.19900 1.06153 0.80030 1.45576 0.87442 1.26503 0.93341 1.04534 0.94557 1.70083 1.01552 1.38739 1.38622 0.84912 0.79345 0.75652 0.78472 1.18636 1.19671 1.18001 1.61850 1.08560 1.53801 1.01900 1.22147 0.87753 0.98951 1.01710 1.22549 1.02030 0.96882 0.90874 0.92974 0.92038 0.88773 0.85342 0.82739 0.84035 0.88612 0.90769 0.96711 0.89256 0.95336 0.89456 0.89751 0.95283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.85 71.98 0.64 -3.55 16 2 C 0.18 7.14 2.41 44.17 0.11 7.25 16 3 H 0.05 1.94 7.40 -2.39 -0.02 1.93 16 4 C 0.22 10.97 5.15 137.76 0.71 11.68 16 5 N -0.52 -27.14 11.10 -179.56 -1.99 -29.13 16 6 C -0.01 -0.45 7.23 39.42 0.28 -0.17 16 7 C -0.10 -4.21 10.10 22.49 0.23 -3.99 16 8 C -0.13 -5.03 10.02 22.26 0.22 -4.80 16 9 C -0.14 -5.84 10.03 22.32 0.22 -5.61 16 10 C -0.08 -3.84 8.70 22.31 0.19 -3.64 16 11 C 0.02 1.13 6.11 38.78 0.24 1.37 16 12 N -0.31 -16.83 2.81 -333.13 -0.94 -17.77 16 13 C -0.39 -20.41 9.10 83.99 0.76 -19.65 16 14 H 0.11 5.30 7.81 -2.91 -0.02 5.28 16 15 C 0.02 1.00 4.63 84.92 0.39 1.39 16 16 N -0.86 -45.98 11.08 21.65 0.24 -45.74 16 17 Si 1.00 38.38 29.59 68.60 2.03 40.41 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 N -0.54 -19.48 4.86 -927.74 -4.51 -23.98 16 22 C 0.04 1.65 9.29 127.69 1.19 2.83 16 23 C 0.02 0.61 8.99 127.69 1.15 1.76 16 24 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 26 H 0.09 2.37 6.50 -2.39 -0.02 2.35 16 27 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 29 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 30 H 0.10 4.93 6.72 -2.91 -0.02 4.91 16 31 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 2.81 8.05 -2.39 -0.02 2.79 16 34 H 0.03 1.33 6.94 -2.39 -0.02 1.32 16 35 H 0.09 1.94 6.61 -2.38 -0.02 1.92 16 36 H 0.08 1.85 8.01 -2.39 -0.02 1.83 16 37 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 Total: -1.00 -66.34 304.43 2.22 -64.11 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 1.06 Total: 27.22 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 6.33 Total: -15.13 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -7.20 Total: -116.63 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -66.34 2.22 -64.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071685314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.266 kcal (2) G-P(sol) polarization free energy of solvation -66.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds