Wall clock time and date at job start Mon Mar 30 2020 06:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46859 * 2 1 4 4 N 1.46500 * 109.47155 * 120.00407 * 2 1 3 5 5 C 1.36937 * 119.99628 * 301.86031 * 4 2 1 6 6 H 1.07991 * 119.99996 * 321.88120 * 5 4 2 7 7 C 1.38817 * 119.99750 * 141.88620 * 5 4 2 8 8 N 1.31628 * 119.99777 * 338.49132 * 7 5 4 9 9 Si 1.86793 * 120.00044 * 158.49094 * 7 5 4 10 10 H 1.48502 * 109.46926 * 89.99897 * 9 7 5 11 11 H 1.48501 * 109.47078 * 209.99719 * 9 7 5 12 12 H 1.48493 * 109.47353 * 329.99927 * 9 7 5 13 13 C 1.46501 * 119.99929 * 121.86744 * 4 2 1 14 14 C 1.50701 * 109.47288 * 89.99649 * 13 4 2 15 15 C 1.35098 * 125.68585 * 94.99816 * 14 13 4 16 16 N 1.36839 * 107.17754 * 180.02562 * 15 14 13 17 17 C 1.36481 * 132.56753 * 179.97438 * 16 15 14 18 18 C 1.34959 * 120.61112 * 179.97438 * 17 16 15 19 19 C 1.40475 * 120.29448 * 0.03984 * 18 17 16 20 20 C 1.36015 * 119.69660 * 359.97438 * 19 18 17 21 21 C 1.37076 * 106.99960 * 0.02562 * 16 15 14 22 22 N 1.32551 * 108.03585 * 359.97438 * 21 16 15 23 23 H 1.09003 * 109.46931 * 305.38695 * 1 2 3 24 24 H 1.09000 * 109.47420 * 65.39011 * 1 2 3 25 25 H 1.09005 * 109.47395 * 185.38962 * 1 2 3 26 26 H 1.09006 * 109.46715 * 239.99919 * 2 1 3 27 27 H 1.09008 * 109.46556 * 180.27565 * 3 2 1 28 28 H 1.09001 * 109.47217 * 300.26762 * 3 2 1 29 29 H 1.08997 * 109.47415 * 60.27460 * 3 2 1 30 30 H 0.96995 * 119.99942 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47110 * 329.99179 * 13 4 2 32 32 H 1.09003 * 109.46733 * 209.99689 * 13 4 2 33 33 H 1.08002 * 126.41557 * 0.02562 * 15 14 13 34 34 H 1.08005 * 119.70061 * 0.02898 * 17 16 15 35 35 H 1.07998 * 119.85334 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.14487 * 180.25827 * 19 18 17 37 37 H 1.07997 * 120.33785 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6563 -0.2455 2.4395 6 1 1.5804 0.8143 2.6326 7 6 1.3871 -1.1566 3.4516 8 7 1.0624 -2.3964 3.1518 9 14 1.4855 -0.6230 5.2390 10 1 0.1596 -0.1194 5.6790 11 1 1.8791 -1.7815 6.0805 12 1 2.4960 0.4561 5.3786 13 6 2.8940 -1.8575 1.0620 14 6 4.3320 -1.4069 1.0427 15 6 5.1559 -1.3545 2.1121 16 7 6.3653 -0.8934 1.6682 17 6 7.5482 -0.6458 2.3024 18 6 8.6133 -0.1837 1.6144 19 6 8.5172 0.0498 0.2325 20 6 7.3442 -0.1925 -0.4118 21 6 6.2408 -0.6744 0.3208 22 7 5.0038 -0.9920 -0.0340 23 1 -0.3633 0.5951 0.8378 24 1 -0.3634 0.4279 -0.9343 25 1 -0.3634 -1.0231 0.0965 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0049 28 1 1.6727 1.9577 -0.8876 29 1 1.6806 1.9549 0.8924 30 1 0.8739 -3.0329 3.8590 31 1 2.6643 -2.3793 0.1330 32 1 2.7352 -2.5297 1.9052 33 1 4.9066 -1.6258 3.1273 34 1 7.6330 -0.8220 3.3646 35 1 9.5436 0.0077 2.1285 36 1 9.3723 0.4156 -0.3165 37 1 7.2589 -0.0171 -1.4740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:26 Heat of formation + Delta-G solvation = 108.218563 kcal Electronic energy + Delta-G solvation = -19484.887508 eV Core-core repulsion = 16650.248297 eV Total energy + Delta-G solvation = -2834.639211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19428 -37.26490 -36.08603 -33.18836 -32.37795 -30.86060 -29.18157 -28.12977 -26.05347 -25.89590 -23.57733 -22.48046 -22.20010 -19.92456 -19.38751 -17.31037 -16.42763 -16.22584 -15.38099 -15.22626 -14.86658 -14.29923 -14.07950 -13.62510 -13.44324 -12.93249 -12.46768 -12.23574 -11.78242 -11.56732 -11.49304 -11.27769 -11.23543 -11.05753 -10.75186 -10.64783 -10.46037 -10.25955 -10.02054 -9.89283 -9.51400 -9.33881 -8.46163 -8.14567 -7.35034 -6.53758 -5.79487 -3.33341 1.04655 1.68633 3.08162 3.31955 3.40983 3.44098 3.48219 3.98068 4.49163 4.61432 4.76723 5.05519 5.10889 5.31765 5.37591 5.59347 5.78296 6.03051 6.10275 6.11594 6.15247 6.33627 6.39916 6.42195 6.50128 6.57075 6.81258 6.84797 6.89697 6.92454 6.97955 7.30411 7.36396 7.46038 7.53026 7.66726 7.86773 8.52570 8.62772 9.21167 9.83953 10.45220 11.22237 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.007432 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.576776 B = 3766.756228 C = 4646.853328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 C -0.150 4.150 4 N -0.567 5.567 5 C -0.245 4.245 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.215 3.785 14 C 0.079 3.921 15 C -0.090 4.090 16 N -0.366 5.366 17 C 0.062 3.938 18 C -0.162 4.162 19 C -0.119 4.119 20 C -0.075 4.075 21 C 0.202 3.798 22 N -0.486 5.486 23 H 0.052 0.948 24 H 0.029 0.971 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.254 0.746 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 2.767 -3.152 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.061 3.939 3 C -0.209 4.209 4 N -0.286 5.286 5 C -0.375 4.375 6 H 0.075 0.925 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.087 3.913 14 C -0.055 4.055 15 C -0.221 4.221 16 N -0.040 5.040 17 C -0.061 4.061 18 C -0.184 4.184 19 C -0.142 4.142 20 C -0.096 4.096 21 C -0.041 4.041 22 N -0.208 5.208 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.193 0.807 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.750 2.634 -3.779 12.621 hybrid contribution 0.530 0.350 2.075 2.170 sum 12.280 2.984 -1.704 12.752 Atomic orbital electron populations 1.22056 0.97809 1.01538 0.98922 1.20386 0.92094 0.91743 0.89697 1.22117 1.00402 0.98853 0.99569 1.43758 1.50486 1.33001 1.01388 1.18902 1.40574 0.91314 0.86755 0.92480 1.25126 0.98706 0.96427 0.98439 1.69994 1.46912 1.04352 1.31564 0.86535 0.78201 0.77717 0.85795 1.21211 1.21499 1.20545 1.19512 0.79285 0.90587 1.01908 1.22842 0.98541 0.97169 0.86982 1.22631 0.83470 1.13960 1.01990 1.42913 1.09240 1.41671 1.10183 1.21548 0.84482 1.01206 0.98856 1.20605 0.98283 1.04499 0.94994 1.20847 0.97645 1.01492 0.94264 1.20179 0.89697 0.99635 1.00089 1.21040 0.95474 1.06089 0.81470 1.70728 1.00783 1.19264 1.29986 0.92882 0.95200 0.92933 0.93143 0.93790 0.94680 0.93206 0.93547 0.93860 0.87423 0.80682 0.82791 0.84095 0.84888 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.04 37.16 0.34 -2.71 16 2 C 0.17 3.73 3.36 -67.93 -0.23 3.50 16 3 C -0.15 -3.12 9.19 37.16 0.34 -2.78 16 4 N -0.57 -14.07 2.34 -167.02 -0.39 -14.46 16 5 C -0.25 -6.52 8.24 -15.06 -0.12 -6.64 16 6 H 0.06 1.56 6.93 -52.49 -0.36 1.20 16 7 C 0.01 0.34 4.95 -17.43 -0.09 0.26 16 8 N -0.89 -24.42 11.52 55.49 0.64 -23.78 16 9 Si 0.89 20.95 29.61 -169.99 -5.03 15.92 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.22 5.17 5.80 -5.19 -0.03 5.14 16 14 C 0.08 1.77 6.64 -82.98 -0.55 1.22 16 15 C -0.09 -1.84 11.66 -16.43 -0.19 -2.03 16 16 N -0.37 -6.60 2.94 -62.66 -0.18 -6.78 16 17 C 0.06 0.85 10.95 -16.65 -0.18 0.67 16 18 C -0.16 -1.81 9.99 -39.90 -0.40 -2.21 16 19 C -0.12 -1.37 10.07 -39.54 -0.40 -1.77 16 20 C -0.08 -1.10 10.11 -39.36 -0.40 -1.50 16 21 C 0.20 3.81 7.81 -156.05 -1.22 2.59 16 22 N -0.49 -10.57 11.32 -9.01 -0.10 -10.67 16 23 H 0.05 1.17 7.80 -51.93 -0.41 0.76 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.11 7.78 -51.93 -0.40 0.71 16 27 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 1.07 7.05 -51.93 -0.37 0.70 16 30 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.04 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.11 2.79 5.56 -51.93 -0.29 2.50 16 33 H 0.18 3.40 8.06 -52.49 -0.42 2.98 16 34 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -30.24 311.05 -8.69 -38.93 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.18 Total: 2.42 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.13 Total: -6.26 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.04 Total: -55.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.24 -8.69 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.151 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds