Wall clock time and date at job start Mon Mar 30 2020 06:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46859 * 2 1 4 4 N 1.46500 * 109.47155 * 120.00407 * 2 1 3 5 5 C 1.36937 * 119.99628 * 301.86031 * 4 2 1 6 6 H 1.07991 * 119.99996 * 321.88120 * 5 4 2 7 7 C 1.38817 * 119.99750 * 141.88620 * 5 4 2 8 8 N 1.31628 * 119.99777 * 338.49132 * 7 5 4 9 9 Si 1.86793 * 120.00044 * 158.49094 * 7 5 4 10 10 H 1.48502 * 109.46926 * 89.99897 * 9 7 5 11 11 H 1.48501 * 109.47078 * 209.99719 * 9 7 5 12 12 H 1.48493 * 109.47353 * 329.99927 * 9 7 5 13 13 C 1.46501 * 119.99929 * 121.86744 * 4 2 1 14 14 C 1.50701 * 109.47288 * 89.99649 * 13 4 2 15 15 C 1.35098 * 125.68585 * 94.99816 * 14 13 4 16 16 N 1.36839 * 107.17754 * 180.02562 * 15 14 13 17 17 C 1.36481 * 132.56753 * 179.97438 * 16 15 14 18 18 C 1.34959 * 120.61112 * 179.97438 * 17 16 15 19 19 C 1.40475 * 120.29448 * 0.03984 * 18 17 16 20 20 C 1.36015 * 119.69660 * 359.97438 * 19 18 17 21 21 C 1.37076 * 106.99960 * 0.02562 * 16 15 14 22 22 N 1.32551 * 108.03585 * 359.97438 * 21 16 15 23 23 H 1.09003 * 109.46931 * 305.38695 * 1 2 3 24 24 H 1.09000 * 109.47420 * 65.39011 * 1 2 3 25 25 H 1.09005 * 109.47395 * 185.38962 * 1 2 3 26 26 H 1.09006 * 109.46715 * 239.99919 * 2 1 3 27 27 H 1.09008 * 109.46556 * 180.27565 * 3 2 1 28 28 H 1.09001 * 109.47217 * 300.26762 * 3 2 1 29 29 H 1.08997 * 109.47415 * 60.27460 * 3 2 1 30 30 H 0.96995 * 119.99942 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47110 * 329.99179 * 13 4 2 32 32 H 1.09003 * 109.46733 * 209.99689 * 13 4 2 33 33 H 1.08002 * 126.41557 * 0.02562 * 15 14 13 34 34 H 1.08005 * 119.70061 * 0.02898 * 17 16 15 35 35 H 1.07998 * 119.85334 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.14487 * 180.25827 * 19 18 17 37 37 H 1.07997 * 120.33785 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6563 -0.2455 2.4395 6 1 1.5804 0.8143 2.6326 7 6 1.3871 -1.1566 3.4516 8 7 1.0624 -2.3964 3.1518 9 14 1.4855 -0.6230 5.2390 10 1 0.1596 -0.1194 5.6790 11 1 1.8791 -1.7815 6.0805 12 1 2.4960 0.4561 5.3786 13 6 2.8940 -1.8575 1.0620 14 6 4.3320 -1.4069 1.0427 15 6 5.1559 -1.3545 2.1121 16 7 6.3653 -0.8934 1.6682 17 6 7.5482 -0.6458 2.3024 18 6 8.6133 -0.1837 1.6144 19 6 8.5172 0.0498 0.2325 20 6 7.3442 -0.1925 -0.4118 21 6 6.2408 -0.6744 0.3208 22 7 5.0038 -0.9920 -0.0340 23 1 -0.3633 0.5951 0.8378 24 1 -0.3634 0.4279 -0.9343 25 1 -0.3634 -1.0231 0.0965 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0049 28 1 1.6727 1.9577 -0.8876 29 1 1.6806 1.9549 0.8924 30 1 0.8739 -3.0329 3.8590 31 1 2.6643 -2.3793 0.1330 32 1 2.7352 -2.5297 1.9052 33 1 4.9066 -1.6258 3.1273 34 1 7.6330 -0.8220 3.3646 35 1 9.5436 0.0077 2.1285 36 1 9.3723 0.4156 -0.3165 37 1 7.2589 -0.0171 -1.4740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:26 Heat of formation + Delta-G solvation = 92.259856 kcal Electronic energy + Delta-G solvation = -19485.579530 eV Core-core repulsion = 16650.248297 eV Total energy + Delta-G solvation = -2835.331232 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54780 -38.71401 -37.68970 -34.43741 -34.29887 -32.52737 -30.64782 -29.56682 -27.78638 -27.66933 -25.26865 -23.84211 -23.45003 -21.51553 -21.21716 -18.63348 -18.09401 -17.56514 -16.80435 -16.74883 -16.37644 -15.92558 -15.54675 -15.32873 -14.86128 -14.66775 -14.27255 -13.48248 -13.37917 -13.21489 -13.05572 -12.97571 -12.62001 -12.58410 -12.50210 -12.24383 -12.13876 -11.87633 -11.84344 -11.73681 -11.32847 -10.89596 -10.47919 -9.50764 -8.68662 -8.51783 -7.80465 -5.39111 -0.03584 0.47703 1.43400 1.46811 1.55717 1.81442 2.03404 2.53101 2.71458 3.26907 3.44322 3.68997 3.79240 3.95228 4.14435 4.30072 4.33191 4.51985 4.57776 4.64057 4.75349 4.76357 4.92473 5.01546 5.08563 5.14660 5.15527 5.18162 5.25554 5.35682 5.51260 5.56830 5.68321 5.73810 5.79229 5.85558 6.33260 6.53060 7.12149 7.20104 7.88047 8.46641 9.18728 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.007432 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.576776 B = 3766.756228 C = 4646.853328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.160 3.840 3 C -0.134 4.134 4 N -0.579 5.579 5 C -0.249 4.249 6 H 0.046 0.954 7 C -0.027 4.027 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.285 1.285 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.225 3.775 14 C 0.055 3.945 15 C -0.110 4.110 16 N -0.369 5.369 17 C 0.035 3.965 18 C -0.141 4.141 19 C -0.084 4.084 20 C -0.109 4.109 21 C 0.196 3.804 22 N -0.530 5.530 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.253 0.747 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.182 0.818 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.473 4.464 -3.126 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.193 4.193 4 N -0.299 5.299 5 C -0.380 4.380 6 H 0.064 0.936 7 C -0.224 4.224 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.212 1.212 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.097 3.903 14 C -0.079 4.079 15 C -0.241 4.241 16 N -0.042 5.042 17 C -0.087 4.087 18 C -0.161 4.161 19 C -0.107 4.107 20 C -0.130 4.130 21 C -0.048 4.048 22 N -0.252 5.252 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.192 0.808 34 H 0.198 0.802 35 H 0.209 0.791 36 H 0.199 0.801 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 15.003 4.339 -3.749 16.062 hybrid contribution -0.185 -0.112 1.979 1.991 sum 14.818 4.227 -1.770 15.511 Atomic orbital electron populations 1.21918 0.96805 1.00137 1.00191 1.20548 0.92867 0.92444 0.88792 1.21932 0.99072 0.97803 1.00474 1.43899 1.51272 1.33095 1.01641 1.18933 1.40337 0.90857 0.87834 0.93600 1.25694 0.98744 0.96457 1.01518 1.70109 1.48070 1.05185 1.32317 0.85617 0.77877 0.77241 0.81726 1.21216 1.21237 1.20346 1.19159 0.80985 0.90137 1.00023 1.22343 0.98014 0.99120 0.88385 1.22420 0.84783 1.15506 1.01413 1.42953 1.09727 1.41426 1.10086 1.22351 0.83580 1.02067 1.00682 1.21324 0.98945 1.00893 0.94953 1.21516 0.97452 0.97149 0.94589 1.20553 0.89662 1.01668 1.01070 1.21696 0.95559 1.05182 0.82338 1.70579 1.02611 1.21740 1.30281 0.94237 0.91615 0.95122 0.93413 0.95568 0.91503 0.94326 0.93796 0.95144 0.89778 0.80847 0.80214 0.79111 0.80066 0.82537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 9.04 71.98 0.65 -4.96 16 2 C 0.16 7.30 3.36 44.99 0.15 7.45 16 3 C -0.13 -5.57 9.19 71.98 0.66 -4.91 16 4 N -0.58 -30.06 2.34 -682.34 -1.60 -31.66 16 5 C -0.25 -13.72 8.24 84.03 0.69 -13.03 16 6 H 0.05 2.60 6.93 -2.92 -0.02 2.58 16 7 C -0.03 -1.46 4.95 84.86 0.42 -1.04 16 8 N -0.91 -52.38 11.52 21.65 0.25 -52.13 16 9 Si 0.95 44.11 29.61 68.60 2.03 46.14 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.22 11.54 5.80 85.63 0.50 12.03 16 14 C 0.06 2.60 6.64 41.58 0.28 2.88 16 15 C -0.11 -4.69 11.66 83.19 0.97 -3.72 16 16 N -0.37 -13.11 2.94 -352.16 -1.04 -14.15 16 17 C 0.03 0.84 10.95 83.22 0.91 1.75 16 18 C -0.14 -2.35 9.99 22.06 0.22 -2.13 16 19 C -0.08 -1.47 10.07 22.30 0.22 -1.24 16 20 C -0.11 -2.90 10.11 22.41 0.23 -2.67 16 21 C 0.20 7.35 7.81 134.11 1.05 8.40 16 22 N -0.53 -23.93 11.32 -182.41 -2.06 -25.99 16 23 H 0.04 1.75 7.80 -2.39 -0.02 1.74 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 2.18 7.78 -2.38 -0.02 2.16 16 27 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.66 7.05 -2.39 -0.02 1.64 16 30 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.03 1.56 7.90 -2.39 -0.02 1.54 16 32 H 0.08 4.68 5.56 -2.39 -0.01 4.67 16 33 H 0.17 7.13 8.06 -2.91 -0.02 7.11 16 34 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -70.13 311.05 5.58 -64.55 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.05 Total: 14.43 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.95 Total: -1.19 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -4.45 Total: -123.93 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.13 5.58 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.812 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds