Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.47033 * 2 1 4 4 C 1.35990 * 116.99840 * 179.97438 * 3 2 1 5 5 C 1.39266 * 119.86657 * 0.02562 * 4 3 2 6 6 C 1.37681 * 120.61994 * 180.25549 * 5 4 3 7 7 C 1.39110 * 119.99185 * 359.48986 * 6 5 4 8 8 N 1.37894 * 133.35381 * 180.20995 * 7 6 5 9 9 H 0.96999 * 125.07493 * 0.22978 * 8 7 6 10 10 C 1.36803 * 109.85012 * 180.24706 * 8 7 6 11 11 C 1.50701 * 125.03141 * 179.97438 * 10 8 7 12 12 C 1.34242 * 109.93516 * 0.02562 * 10 8 7 13 13 C 1.50704 * 126.48921 * 179.97438 * 12 10 8 14 14 C 1.50690 * 109.47124 * 270.00101 * 13 12 10 15 15 H 1.08002 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99971 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00054 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99962 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47256 * 90.00025 * 18 16 14 20 20 H 1.48503 * 109.47304 * 210.00335 * 18 16 14 21 21 H 1.48507 * 109.46904 * 330.00070 * 18 16 14 22 22 C 1.40620 * 119.52060 * 0.47899 * 7 6 5 23 23 C 1.38043 * 119.86091 * 179.97438 * 4 3 2 24 24 H 1.08999 * 109.46561 * 60.00026 * 1 2 3 25 25 H 1.09000 * 109.46620 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47352 * 299.99943 * 1 2 3 27 27 H 1.08999 * 109.47206 * 240.00337 * 2 1 3 28 28 H 1.09000 * 109.47253 * 119.99705 * 2 1 3 29 29 H 1.08002 * 119.68764 * 359.97071 * 5 4 3 30 30 H 1.07998 * 120.00432 * 179.72322 * 6 5 4 31 31 H 1.09006 * 109.46856 * 270.04366 * 11 10 8 32 32 H 1.08997 * 109.47298 * 30.04332 * 11 10 8 33 33 H 1.09001 * 109.46993 * 150.04606 * 11 10 8 34 34 H 1.08999 * 109.46968 * 30.00147 * 13 12 10 35 35 H 1.09005 * 109.47015 * 149.99628 * 13 12 10 36 36 H 0.97002 * 120.00110 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.20198 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2003 0.4191 0.0005 6 6 5.5675 0.5815 0.0064 7 6 6.1159 1.8599 0.0016 8 7 7.4106 2.3346 0.0016 9 1 8.2072 1.7811 0.0021 10 6 7.4038 3.7026 0.0011 11 6 8.6335 4.5738 0.0015 12 6 6.1396 4.1540 0.0014 13 6 5.7030 5.5964 0.0016 14 6 5.5578 6.0771 1.4223 15 1 5.7609 5.4052 2.2432 16 6 5.1646 7.3744 1.6745 17 7 5.0384 7.7941 2.9144 18 14 4.8127 8.5363 0.2548 19 1 3.3795 8.4382 -0.1216 20 1 5.1221 9.9292 0.6666 21 1 5.6568 8.1653 -0.9094 22 6 5.2646 2.9791 0.0011 23 6 3.8791 2.8024 0.0000 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7798 -0.5757 0.0006 30 1 6.2141 -0.2835 0.0108 31 1 8.9298 4.7835 1.0293 32 1 9.4445 4.0578 -0.5124 33 1 8.4155 5.5102 -0.5121 34 1 6.4495 6.2020 -0.5124 35 1 4.7458 5.6864 -0.5122 36 1 4.7614 8.7067 3.0918 37 1 3.2222 3.6596 -0.0012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082350585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = 5.230845 kcal Electronic energy + Delta-G solvation = -18737.731984 eV Core-core repulsion = 15866.334139 eV Total energy + Delta-G solvation = -2871.397845 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80845 -39.01691 -35.62481 -33.48387 -31.95015 -31.42736 -30.43412 -29.15582 -27.34965 -25.97827 -23.47384 -22.49602 -21.66867 -20.48927 -18.50916 -17.32496 -17.12145 -16.65157 -15.89537 -15.26844 -15.00623 -14.31679 -13.99245 -13.52496 -13.06308 -13.02560 -12.97068 -12.71221 -12.41491 -12.30742 -12.22952 -11.96403 -11.61838 -11.52052 -11.12355 -11.08145 -10.57288 -10.37200 -10.15115 -10.00871 -9.86096 -9.28873 -8.81142 -8.46740 -7.34757 -6.76638 -5.96061 -3.92957 1.52889 2.09024 3.35135 3.36641 3.43667 3.46242 3.46702 3.65005 4.35766 4.51259 4.93511 4.95682 5.14978 5.17314 5.24581 5.35957 5.42208 5.48117 5.62685 5.70614 5.77195 5.82738 5.97408 6.02751 6.06833 6.21812 6.38499 6.48023 6.52647 6.74079 6.81575 7.09997 7.15024 7.29579 7.53076 7.74366 7.82963 7.88727 8.11699 8.65518 9.11579 9.65498 11.17372 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.006316 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.739300 B = 4432.358858 C = 5713.152505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.319 6.319 4 C 0.084 3.916 5 C -0.184 4.184 6 C -0.103 4.103 7 C 0.067 3.933 8 N -0.601 5.601 9 H 0.406 0.594 10 C 0.057 3.943 11 C -0.081 4.081 12 C -0.111 4.111 13 C 0.049 3.951 14 C -0.503 4.503 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.874 3.126 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.059 4.059 23 C -0.091 4.091 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -15.481 -7.840 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.234 6.234 4 C 0.039 3.961 5 C -0.204 4.204 6 C -0.124 4.124 7 C -0.039 4.039 8 N -0.207 5.207 9 H 0.241 0.759 10 C -0.048 4.048 11 C -0.139 4.139 12 C -0.117 4.117 13 C 0.011 3.989 14 C -0.541 4.541 15 H 0.090 0.910 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.064 4.064 23 C -0.110 4.110 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.112 -15.206 -7.732 17.059 hybrid contribution 0.198 0.044 -0.462 0.505 sum 0.087 -15.161 -8.195 17.235 Atomic orbital electron populations 1.21762 0.93277 1.02317 1.03533 1.22634 0.95445 0.82949 1.00784 1.86073 1.19374 1.28026 1.89909 1.18473 0.81761 0.93593 1.02295 1.20713 0.93087 0.97453 1.09144 1.19604 0.94193 0.93348 1.05263 1.18124 0.84522 0.94324 1.06918 1.41516 1.05510 1.05741 1.67886 0.75865 1.20011 0.96578 0.81770 1.06443 1.20336 0.92181 0.98297 1.03060 1.20459 0.89731 0.95341 1.06215 1.18162 0.95964 0.86713 0.98048 1.21001 1.45326 0.96946 0.90835 0.91039 1.24989 0.95098 0.97951 0.95311 1.69908 1.48343 1.17425 1.18670 0.86860 0.79265 0.80286 0.83425 1.20222 1.21451 1.18928 1.18910 0.91764 0.92681 1.03073 1.19725 0.93421 0.94710 1.03183 0.91654 0.90850 0.91517 0.92642 0.92543 0.85957 0.86698 0.90576 0.92781 0.89666 0.95647 0.96134 0.92824 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.66 5.46 37.16 0.20 0.87 16 3 O -0.32 -5.22 10.13 -19.71 -0.20 -5.42 16 4 C 0.08 1.48 6.68 -39.27 -0.26 1.22 16 5 C -0.18 -2.79 9.01 -39.40 -0.36 -3.15 16 6 C -0.10 -1.57 10.06 -39.46 -0.40 -1.97 16 7 C 0.07 1.21 7.27 -83.92 -0.61 0.60 16 8 N -0.60 -9.73 6.08 -6.93 -0.04 -9.77 16 9 H 0.41 4.94 8.96 -40.82 -0.37 4.57 16 10 C 0.06 1.07 7.08 -81.78 -0.58 0.49 16 11 C -0.08 -1.26 10.18 36.01 0.37 -0.90 16 12 C -0.11 -2.47 5.50 -102.70 -0.57 -3.03 16 13 C 0.05 1.20 4.33 -29.04 -0.13 1.08 16 14 C -0.50 -14.52 9.65 -34.44 -0.33 -14.86 16 15 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 18 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 22 C -0.06 -1.24 6.35 -105.14 -0.67 -1.91 16 23 C -0.09 -1.86 10.03 -39.12 -0.39 -2.26 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 28 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 29 H 0.12 1.46 6.26 -52.49 -0.33 1.13 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.37 7.04 -51.93 -0.37 1.01 16 34 H 0.03 0.61 6.11 -51.93 -0.32 0.29 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -33.31 310.09 -8.01 -41.32 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.11 Total: 2.48 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.43 Total: -22.97 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.73 Total: -37.12 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.20 Total: -5.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.31 -8.01 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082350585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.548 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds