Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.47033 * 2 1 4 4 C 1.35990 * 116.99840 * 179.97438 * 3 2 1 5 5 C 1.39266 * 119.86657 * 0.02562 * 4 3 2 6 6 C 1.37681 * 120.61994 * 180.25549 * 5 4 3 7 7 C 1.39110 * 119.99185 * 359.48986 * 6 5 4 8 8 N 1.37894 * 133.35381 * 180.20995 * 7 6 5 9 9 H 0.96999 * 125.07493 * 0.22978 * 8 7 6 10 10 C 1.36803 * 109.85012 * 180.24706 * 8 7 6 11 11 C 1.50701 * 125.03141 * 179.97438 * 10 8 7 12 12 C 1.34242 * 109.93516 * 0.02562 * 10 8 7 13 13 C 1.50704 * 126.48921 * 179.97438 * 12 10 8 14 14 C 1.50690 * 109.47124 * 270.00101 * 13 12 10 15 15 H 1.08002 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99971 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00054 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99962 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47256 * 90.00025 * 18 16 14 20 20 H 1.48503 * 109.47304 * 210.00335 * 18 16 14 21 21 H 1.48507 * 109.46904 * 330.00070 * 18 16 14 22 22 C 1.40620 * 119.52060 * 0.47899 * 7 6 5 23 23 C 1.38043 * 119.86091 * 179.97438 * 4 3 2 24 24 H 1.08999 * 109.46561 * 60.00026 * 1 2 3 25 25 H 1.09000 * 109.46620 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47352 * 299.99943 * 1 2 3 27 27 H 1.08999 * 109.47206 * 240.00337 * 2 1 3 28 28 H 1.09000 * 109.47253 * 119.99705 * 2 1 3 29 29 H 1.08002 * 119.68764 * 359.97071 * 5 4 3 30 30 H 1.07998 * 120.00432 * 179.72322 * 6 5 4 31 31 H 1.09006 * 109.46856 * 270.04366 * 11 10 8 32 32 H 1.08997 * 109.47298 * 30.04332 * 11 10 8 33 33 H 1.09001 * 109.46993 * 150.04606 * 11 10 8 34 34 H 1.08999 * 109.46968 * 30.00147 * 13 12 10 35 35 H 1.09005 * 109.47015 * 149.99628 * 13 12 10 36 36 H 0.97002 * 120.00110 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.20198 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2003 0.4191 0.0005 6 6 5.5675 0.5815 0.0064 7 6 6.1159 1.8599 0.0016 8 7 7.4106 2.3346 0.0016 9 1 8.2072 1.7811 0.0021 10 6 7.4038 3.7026 0.0011 11 6 8.6335 4.5738 0.0015 12 6 6.1396 4.1540 0.0014 13 6 5.7030 5.5964 0.0016 14 6 5.5578 6.0771 1.4223 15 1 5.7609 5.4052 2.2432 16 6 5.1646 7.3744 1.6745 17 7 5.0384 7.7941 2.9144 18 14 4.8127 8.5363 0.2548 19 1 3.3795 8.4382 -0.1216 20 1 5.1221 9.9292 0.6666 21 1 5.6568 8.1653 -0.9094 22 6 5.2646 2.9791 0.0011 23 6 3.8791 2.8024 0.0000 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7798 -0.5757 0.0006 30 1 6.2141 -0.2835 0.0108 31 1 8.9298 4.7835 1.0293 32 1 9.4445 4.0578 -0.5124 33 1 8.4155 5.5102 -0.5121 34 1 6.4495 6.2020 -0.5124 35 1 4.7458 5.6864 -0.5122 36 1 4.7614 8.7067 3.0918 37 1 3.2222 3.6596 -0.0012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082350585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = -16.187713 kcal Electronic energy + Delta-G solvation = -18738.660762 eV Core-core repulsion = 15866.334139 eV Total energy + Delta-G solvation = -2872.326623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18835 -40.25732 -36.91294 -35.44484 -33.64420 -32.55077 -31.75258 -30.74249 -28.90292 -27.39348 -24.74076 -24.18486 -23.05104 -21.74140 -19.97660 -18.90856 -18.68456 -18.45998 -16.92740 -16.53242 -16.28897 -16.25004 -15.54643 -14.98446 -14.73927 -14.32674 -14.10398 -14.08960 -13.81143 -13.62761 -13.44905 -13.31270 -13.14494 -12.86376 -12.59462 -12.24976 -12.16255 -12.11091 -11.89151 -11.59098 -11.36731 -11.19068 -10.73882 -10.32700 -8.70126 -8.27589 -8.20228 -6.27139 0.17403 0.73039 1.37292 1.38698 1.50891 1.85874 2.26377 2.38765 2.44181 2.95447 3.09581 3.82665 3.94520 4.12649 4.14580 4.18163 4.31917 4.42299 4.45404 4.52047 4.60768 4.71805 4.79345 4.95796 4.98563 5.02052 5.07825 5.12227 5.18602 5.24120 5.30594 5.44109 5.61619 5.63853 5.74998 5.98088 6.24505 6.37981 6.64396 6.77397 6.90865 7.35308 8.92572 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.006316 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.739300 B = 4432.358858 C = 5713.152505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.343 6.343 4 C 0.092 3.908 5 C -0.180 4.180 6 C -0.083 4.083 7 C 0.055 3.945 8 N -0.581 5.581 9 H 0.429 0.571 10 C 0.078 3.922 11 C -0.082 4.082 12 C -0.178 4.178 13 C 0.061 3.939 14 C -0.506 4.506 15 H 0.021 0.979 16 C 0.007 3.993 17 N -0.953 5.953 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.241 1.241 22 C -0.091 4.091 23 C -0.142 4.142 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.009 0.991 36 H 0.265 0.735 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -18.266 -9.666 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.259 6.259 4 C 0.046 3.954 5 C -0.199 4.199 6 C -0.103 4.103 7 C -0.052 4.052 8 N -0.188 5.188 9 H 0.269 0.731 10 C -0.030 4.030 11 C -0.139 4.139 12 C -0.184 4.184 13 C 0.023 3.977 14 C -0.544 4.544 15 H 0.039 0.961 16 C -0.189 4.189 17 N -0.594 5.594 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.165 1.165 22 C -0.097 4.097 23 C -0.161 4.161 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.012 -18.045 -9.569 20.450 hybrid contribution -0.203 0.726 0.183 0.775 sum 0.809 -17.320 -9.386 19.716 Atomic orbital electron populations 1.21814 0.91874 1.04186 1.02799 1.23067 0.96683 0.80863 1.02380 1.86066 1.18805 1.31450 1.89566 1.18591 0.82841 0.93338 1.00617 1.21151 0.92895 0.98261 1.07613 1.20143 0.94764 0.93476 1.01930 1.18381 0.84565 0.94597 1.07646 1.41397 1.05999 1.04958 1.66417 0.73107 1.20338 0.96383 0.83184 1.03090 1.20439 0.92148 0.97991 1.03307 1.20389 0.92054 0.94509 1.11475 1.17885 0.95658 0.89227 0.94899 1.21190 1.44889 0.96376 0.91937 0.96086 1.25944 0.94757 0.99909 0.98338 1.70069 1.49864 1.18190 1.21288 0.85717 0.79415 0.77714 0.80206 1.19941 1.20450 1.16472 1.19121 0.92440 0.93765 1.04332 1.19672 0.93450 0.95389 1.07622 0.92142 0.87598 0.92568 0.90567 0.91132 0.81785 0.81962 0.90988 0.88274 0.90418 0.94626 0.97285 0.92565 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.04 0.92 5.46 71.98 0.39 1.31 16 3 O -0.34 -11.23 10.13 -93.43 -0.95 -12.17 16 4 C 0.09 3.24 6.68 22.47 0.15 3.39 16 5 C -0.18 -4.89 9.01 22.39 0.20 -4.68 16 6 C -0.08 -2.21 10.06 22.35 0.22 -1.98 16 7 C 0.05 1.88 7.27 38.98 0.28 2.16 16 8 N -0.58 -17.51 6.08 -175.83 -1.07 -18.57 16 9 H 0.43 8.79 8.96 -92.71 -0.83 7.95 16 10 C 0.08 2.87 7.08 40.87 0.29 3.16 16 11 C -0.08 -2.41 10.18 71.24 0.72 -1.68 16 12 C -0.18 -8.19 5.50 -18.62 -0.10 -8.30 16 13 C 0.06 3.15 4.33 29.10 0.13 3.28 16 14 C -0.51 -31.01 9.65 25.60 0.25 -30.76 16 15 H 0.02 1.44 7.98 -2.91 -0.02 1.42 16 16 C 0.01 0.41 5.47 84.66 0.46 0.87 16 17 N -0.95 -61.98 13.96 21.45 0.30 -61.68 16 18 Si 0.95 46.01 27.47 68.60 1.88 47.90 16 19 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.24 -10.75 6.54 99.48 0.65 -10.10 16 22 C -0.09 -4.01 6.35 -20.20 -0.13 -4.13 16 23 C -0.14 -6.18 10.03 22.57 0.23 -5.96 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.27 7.65 -2.39 -0.02 1.26 16 28 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 29 H 0.16 3.05 6.26 -2.91 -0.02 3.03 16 30 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.42 7.04 -2.39 -0.02 2.41 16 34 H 0.04 1.72 6.11 -2.39 -0.01 1.71 16 35 H 0.01 0.47 7.57 -2.38 -0.02 0.45 16 36 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 37 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -79.12 310.09 4.20 -74.92 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.19 Total: 14.71 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 3.84 Total: -45.09 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -0.77 Total: -80.25 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.95 Total: -12.17 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.90 kcal Total: -79.12 4.20 -74.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082350585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.729 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds