Wall clock time and date at job start Mon Mar 30 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39527 * 123.87750 * 2 1 4 4 C 1.39370 * 130.82726 * 0.02562 * 3 2 1 5 5 C 1.37939 * 120.13298 * 180.22879 * 4 3 2 6 6 C 1.38306 * 120.37123 * 359.52278 * 5 4 3 7 7 C 1.50702 * 120.08304 * 180.24097 * 6 5 4 8 8 C 1.53005 * 109.46944 * 270.21171 * 7 6 5 9 9 C 1.52998 * 109.47085 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.46943 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00427 * 0.02562 * 10 9 8 12 12 C 1.37886 * 120.00051 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00093 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99818 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.46998 * 89.99629 * 14 12 10 16 16 H 1.48492 * 109.46856 * 209.99897 * 14 12 10 17 17 H 1.48508 * 109.46938 * 329.99808 * 14 12 10 18 18 C 1.38394 * 119.82634 * 0.44827 * 6 5 4 19 19 C 1.37677 * 119.91531 * 359.79498 * 18 6 5 20 20 C 1.51141 * 132.85016 * 180.02562 * 19 18 6 21 21 C 1.34366 * 123.87199 * 179.97438 * 2 1 3 22 22 O 1.21291 * 126.44588 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.46970 * 89.99239 * 1 2 3 24 24 H 1.08990 * 109.47315 * 209.99698 * 1 2 3 25 25 H 1.08999 * 109.46719 * 329.99710 * 1 2 3 26 26 H 1.08002 * 119.92983 * 359.94215 * 4 3 2 27 27 H 1.07994 * 119.81416 * 179.72245 * 5 4 3 28 28 H 1.09001 * 109.47190 * 30.21234 * 7 6 5 29 29 H 1.09000 * 109.46756 * 150.21496 * 7 6 5 30 30 H 1.09008 * 109.46934 * 300.00302 * 8 7 6 31 31 H 1.08999 * 109.46981 * 60.00021 * 8 7 6 32 32 H 1.08995 * 109.47436 * 300.00314 * 9 8 7 33 33 H 1.09000 * 109.46742 * 60.00247 * 9 8 7 34 34 H 0.96999 * 119.99932 * 180.02562 * 13 12 10 35 35 H 1.08008 * 120.03928 * 179.80426 * 18 6 5 36 36 H 1.08998 * 110.51123 * 61.34237 * 20 19 18 37 37 H 1.09004 * 110.50682 * 298.63699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1584 0.0000 4 6 1.8751 2.5027 0.0005 5 6 2.8432 3.4854 -0.0044 6 6 4.1840 3.1461 0.0001 7 6 5.2362 4.2250 0.0003 8 6 5.5924 4.5901 -1.4423 9 6 6.6611 5.6850 -1.4422 10 6 7.0123 6.0441 -2.8629 11 1 6.5221 5.5420 -3.6839 12 6 7.9589 7.0145 -3.1149 13 7 8.2651 7.3283 -4.3547 14 14 8.8064 7.8835 -1.6950 15 1 10.0331 7.1362 -1.3186 16 1 9.1734 9.2622 -2.1067 17 1 7.8862 7.9429 -0.5309 18 6 4.5568 1.8133 0.0002 19 6 3.5925 0.8306 0.0001 20 6 3.6635 -0.6791 0.0007 21 6 2.2139 -1.1156 0.0005 22 8 1.8054 -2.2577 0.0014 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 0.8302 2.7756 0.0000 27 1 2.5525 4.5255 -0.0086 28 1 4.8527 5.1065 0.5141 29 1 6.1269 3.8637 0.5141 30 1 5.9759 3.7085 -1.9561 31 1 4.7016 4.9514 -1.9561 32 1 6.2781 6.5666 -0.9283 33 1 7.5517 5.3232 -0.9284 34 1 8.9313 8.0107 -4.5320 35 1 5.6029 1.5445 0.0006 36 1 4.1701 -1.0373 0.8969 37 1 4.1707 -1.0379 -0.8950 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082541128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:02 Heat of formation + Delta-G solvation = -16.475904 kcal Electronic energy + Delta-G solvation = -18154.675973 eV Core-core repulsion = 15282.336853 eV Total energy + Delta-G solvation = -2872.339120 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63440 -38.77368 -36.54251 -34.43220 -33.20425 -32.28752 -30.40036 -28.71054 -27.17255 -26.40236 -23.49838 -22.11813 -21.02273 -20.39414 -20.01669 -17.33715 -16.95064 -16.66932 -16.53483 -15.40618 -14.82387 -14.46504 -14.21184 -13.96110 -13.76551 -13.66172 -13.36616 -13.16243 -12.84236 -12.66953 -12.43114 -11.97655 -11.86455 -11.62811 -11.07524 -11.02947 -10.71664 -10.36415 -10.30830 -9.91698 -9.71810 -9.56530 -9.17950 -8.93326 -8.53519 -7.87186 -6.03814 -4.01760 1.08960 1.26725 2.27116 2.52527 3.30514 3.38059 3.41221 3.68073 3.94304 4.21288 4.45301 4.64921 4.78722 4.94927 4.99534 5.06393 5.16395 5.18622 5.29652 5.30343 5.40360 5.56583 5.62673 5.81267 5.90925 6.00491 6.15352 6.27960 6.41500 6.43522 6.62047 6.68262 6.76503 6.90010 6.99397 7.32022 7.44173 7.66902 7.80435 8.55010 9.01739 9.58763 11.09792 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.042138 B = 0.003441 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.328351 B = 8135.064758 C = 8269.199078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.553 5.553 3 C 0.123 3.877 4 C -0.132 4.132 5 C -0.084 4.084 6 C -0.081 4.081 7 C -0.084 4.084 8 C -0.096 4.096 9 C -0.015 4.015 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.066 4.066 19 C -0.139 4.139 20 C -0.113 4.113 21 C 0.525 3.475 22 O -0.512 6.512 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -12.168 12.066 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.276 5.276 3 C 0.028 3.972 4 C -0.153 4.153 5 C -0.103 4.103 6 C -0.082 4.082 7 C -0.121 4.121 8 C -0.134 4.134 9 C -0.052 4.052 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.084 4.084 19 C -0.142 4.142 20 C -0.152 4.152 21 C 0.315 3.685 22 O -0.387 6.387 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.140 0.860 27 H 0.149 0.851 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.423 -12.764 11.956 22.046 hybrid contribution 0.347 0.612 0.514 0.871 sum -13.076 -12.152 12.470 21.775 Atomic orbital electron populations 1.21795 0.77749 1.03860 1.02882 1.45687 1.07176 1.05707 1.68992 1.18110 0.90180 0.87379 1.01553 1.20298 0.99986 0.89109 1.05865 1.20846 0.91911 0.99102 0.98437 1.20068 0.94805 0.94300 0.98995 1.20788 0.95929 0.95538 0.99894 1.21467 0.99742 0.99659 0.92492 1.19598 0.93882 0.93953 0.97802 1.21171 1.22297 1.20847 0.91522 0.91108 1.25056 0.96527 0.96601 0.95448 1.69920 1.33254 1.32427 1.18801 0.86764 0.80176 0.78972 0.83276 1.20331 1.21469 1.18971 1.20210 0.98765 0.90911 0.98524 1.19729 0.92739 0.94505 1.07229 1.21041 0.95057 0.92901 1.06185 1.20684 0.89101 0.83869 0.74886 1.90768 1.79122 1.18981 1.49864 0.91598 0.90016 0.90300 0.85989 0.85051 0.91225 0.91258 0.92687 0.92670 0.96638 0.97065 0.92778 0.85190 0.86070 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.77 59.85 0.64 1.28 16 2 N -0.55 -6.09 3.13 -120.63 -0.38 -6.47 16 3 C 0.12 1.40 6.69 -83.69 -0.56 0.84 16 4 C -0.13 -1.41 9.74 -39.27 -0.38 -1.79 16 5 C -0.08 -0.98 9.68 -39.67 -0.38 -1.37 16 6 C -0.08 -1.04 5.14 -104.54 -0.54 -1.58 16 7 C -0.08 -1.22 5.35 -27.88 -0.15 -1.36 16 8 C -0.10 -1.79 5.13 -26.73 -0.14 -1.93 16 9 C -0.02 -0.35 4.04 -27.89 -0.11 -0.46 16 10 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 11 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 12 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 13 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 14 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 18 C -0.07 -0.78 9.70 -39.73 -0.39 -1.17 16 19 C -0.14 -1.58 6.35 -104.37 -0.66 -2.25 16 20 C -0.11 -1.11 6.88 -28.48 -0.20 -1.30 16 21 C 0.52 6.38 8.23 -10.83 -0.09 6.29 16 22 O -0.51 -7.63 17.67 5.55 0.10 -7.53 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.65 7.95 -51.93 -0.41 0.23 16 25 H 0.08 0.48 7.61 -51.93 -0.40 0.09 16 26 H 0.12 1.02 7.70 -52.49 -0.40 0.62 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 33 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -32.89 313.14 -8.20 -41.09 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.36 Total: -3.44 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.38 Total: -18.06 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.40 Total: -33.58 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.10 Total: -7.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.89 -8.20 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082541128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.615 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds