Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39527 * 123.87750 * 2 1 4 4 C 1.39370 * 130.82726 * 0.02562 * 3 2 1 5 5 C 1.37939 * 120.13298 * 180.22879 * 4 3 2 6 6 C 1.38306 * 120.37123 * 359.52278 * 5 4 3 7 7 C 1.50702 * 120.08304 * 180.24097 * 6 5 4 8 8 C 1.53005 * 109.46944 * 270.21171 * 7 6 5 9 9 C 1.52998 * 109.47085 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.46943 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00427 * 0.02562 * 10 9 8 12 12 C 1.37886 * 120.00051 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00093 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99818 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.46998 * 89.99629 * 14 12 10 16 16 H 1.48492 * 109.46856 * 209.99897 * 14 12 10 17 17 H 1.48508 * 109.46938 * 329.99808 * 14 12 10 18 18 C 1.38394 * 119.82634 * 0.44827 * 6 5 4 19 19 C 1.37677 * 119.91531 * 359.79498 * 18 6 5 20 20 C 1.51141 * 132.85016 * 180.02562 * 19 18 6 21 21 C 1.34366 * 123.87199 * 179.97438 * 2 1 3 22 22 O 1.21291 * 126.44588 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.46970 * 89.99239 * 1 2 3 24 24 H 1.08990 * 109.47315 * 209.99698 * 1 2 3 25 25 H 1.08999 * 109.46719 * 329.99710 * 1 2 3 26 26 H 1.08002 * 119.92983 * 359.94215 * 4 3 2 27 27 H 1.07994 * 119.81416 * 179.72245 * 5 4 3 28 28 H 1.09001 * 109.47190 * 30.21234 * 7 6 5 29 29 H 1.09000 * 109.46756 * 150.21496 * 7 6 5 30 30 H 1.09008 * 109.46934 * 300.00302 * 8 7 6 31 31 H 1.08999 * 109.46981 * 60.00021 * 8 7 6 32 32 H 1.08995 * 109.47436 * 300.00314 * 9 8 7 33 33 H 1.09000 * 109.46742 * 60.00247 * 9 8 7 34 34 H 0.96999 * 119.99932 * 180.02562 * 13 12 10 35 35 H 1.08008 * 120.03928 * 179.80426 * 18 6 5 36 36 H 1.08998 * 110.51123 * 61.34237 * 20 19 18 37 37 H 1.09004 * 110.50682 * 298.63699 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2428 1.1584 0.0000 4 6 1.8751 2.5027 0.0005 5 6 2.8432 3.4854 -0.0044 6 6 4.1840 3.1461 0.0001 7 6 5.2362 4.2250 0.0003 8 6 5.5924 4.5901 -1.4423 9 6 6.6611 5.6850 -1.4422 10 6 7.0123 6.0441 -2.8629 11 1 6.5221 5.5420 -3.6839 12 6 7.9589 7.0145 -3.1149 13 7 8.2651 7.3283 -4.3547 14 14 8.8064 7.8835 -1.6950 15 1 10.0331 7.1362 -1.3186 16 1 9.1734 9.2622 -2.1067 17 1 7.8862 7.9429 -0.5309 18 6 4.5568 1.8133 0.0002 19 6 3.5925 0.8306 0.0001 20 6 3.6635 -0.6791 0.0007 21 6 2.2139 -1.1156 0.0005 22 8 1.8054 -2.2577 0.0014 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 0.8302 2.7756 0.0000 27 1 2.5525 4.5255 -0.0086 28 1 4.8527 5.1065 0.5141 29 1 6.1269 3.8637 0.5141 30 1 5.9759 3.7085 -1.9561 31 1 4.7016 4.9514 -1.9561 32 1 6.2781 6.5666 -0.9283 33 1 7.5517 5.3232 -0.9284 34 1 8.9313 8.0107 -4.5320 35 1 5.6029 1.5445 0.0006 36 1 4.1701 -1.0373 0.8969 37 1 4.1707 -1.0379 -0.8950 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082541128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = -35.182020 kcal Electronic energy + Delta-G solvation = -18155.487131 eV Core-core repulsion = 15282.336853 eV Total energy + Delta-G solvation = -2873.150278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49655 -39.71812 -37.57718 -35.95189 -34.34406 -33.83483 -31.69346 -29.77371 -28.26849 -27.42464 -25.00084 -23.01804 -22.27124 -21.55485 -21.20091 -18.84965 -18.14534 -17.83084 -17.38327 -16.54517 -16.14142 -15.85682 -15.33059 -14.94515 -14.87976 -14.66052 -14.61726 -14.31247 -13.96791 -13.84102 -13.34934 -13.18350 -13.11462 -13.05027 -12.55531 -12.40918 -11.89336 -11.75255 -11.50869 -11.33989 -11.30923 -11.20742 -10.98826 -10.72326 -9.77746 -8.79188 -8.25700 -6.29819 0.18052 0.41661 1.36724 1.39956 1.41962 1.54174 1.73009 2.40291 2.79370 3.10089 3.10322 3.40160 3.84967 4.00977 4.09970 4.19877 4.34393 4.40519 4.47051 4.48602 4.55303 4.59155 4.70447 4.74131 4.90405 4.93686 5.00817 5.17572 5.19406 5.21775 5.39945 5.56994 5.62901 5.64173 5.71178 5.76655 5.83679 6.11460 6.33987 6.78654 6.79436 7.34965 8.91433 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.042138 B = 0.003441 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.328351 B = 8135.064758 C = 8269.199078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.553 5.553 3 C 0.113 3.887 4 C -0.128 4.128 5 C -0.090 4.090 6 C -0.097 4.097 7 C -0.072 4.072 8 C -0.088 4.088 9 C -0.014 4.014 10 C -0.533 4.533 11 H 0.027 0.973 12 C -0.002 4.002 13 N -0.956 5.956 14 Si 0.955 3.045 15 H -0.267 1.267 16 H -0.287 1.287 17 H -0.240 1.240 18 C -0.071 4.071 19 C -0.145 4.145 20 C -0.108 4.108 21 C 0.517 3.483 22 O -0.547 6.547 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.518 -11.918 14.446 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.275 5.275 3 C 0.018 3.982 4 C -0.149 4.149 5 C -0.108 4.108 6 C -0.098 4.098 7 C -0.109 4.109 8 C -0.126 4.126 9 C -0.051 4.051 10 C -0.571 4.571 11 H 0.045 0.955 12 C -0.198 4.198 13 N -0.597 5.597 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.213 1.213 17 H -0.163 1.163 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.147 4.147 21 C 0.308 3.692 22 O -0.426 6.426 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.798 -12.510 14.349 23.511 hybrid contribution 0.375 0.496 -0.331 0.704 sum -13.423 -12.014 14.018 22.826 Atomic orbital electron populations 1.22018 0.76271 1.04966 1.03714 1.45831 1.08294 1.05312 1.68099 1.18328 0.90426 0.87822 1.01619 1.20530 1.01131 0.88505 1.04718 1.21046 0.91653 1.00043 0.98075 1.19989 0.94951 0.94192 1.00671 1.20593 0.97053 0.96669 0.96597 1.21306 0.97895 0.97728 0.95664 1.19578 0.95618 0.95661 0.94255 1.21589 1.21840 1.20408 0.93305 0.95509 1.26114 0.97475 0.97621 0.98561 1.70090 1.34449 1.33582 1.21612 0.85590 0.79402 0.77351 0.79884 1.19170 1.21349 1.16347 1.20330 0.99483 0.90756 0.98389 1.19880 0.92789 0.95180 1.06888 1.21094 0.93932 0.91948 1.07702 1.21034 0.90171 0.83607 0.74342 1.90745 1.79856 1.20244 1.51737 0.90911 0.90130 0.88048 0.83565 0.83845 0.90158 0.90270 0.93764 0.93658 0.95851 0.96043 0.92622 0.84222 0.84055 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.77 127.77 1.38 2.40 16 2 N -0.55 -11.30 3.13 -654.16 -2.05 -13.35 16 3 C 0.11 2.35 6.69 38.35 0.26 2.61 16 4 C -0.13 -2.41 9.74 22.47 0.22 -2.19 16 5 C -0.09 -1.87 9.68 22.22 0.21 -1.66 16 6 C -0.10 -2.29 5.14 -19.81 -0.10 -2.40 16 7 C -0.07 -1.91 5.35 29.85 0.16 -1.75 16 8 C -0.09 -3.22 5.13 30.60 0.16 -3.06 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 11 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 12 C 0.00 -0.10 5.47 84.66 0.46 0.36 16 13 N -0.96 -60.40 13.96 21.45 0.30 -60.10 16 14 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 18 C -0.07 -1.56 9.70 22.17 0.22 -1.35 16 19 C -0.14 -3.02 6.35 -19.70 -0.13 -3.14 16 20 C -0.11 -1.94 6.88 29.46 0.20 -1.73 16 21 C 0.52 12.03 8.23 87.94 0.72 12.75 16 22 O -0.55 -16.14 17.67 -3.06 -0.05 -16.19 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 1.19 7.95 -2.39 -0.02 1.17 16 25 H 0.10 0.98 7.61 -2.39 -0.02 0.96 16 26 H 0.15 1.96 7.70 -2.91 -0.02 1.93 16 27 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 29 H 0.08 1.94 8.09 -2.39 -0.02 1.92 16 30 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 33 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 34 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.14 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -72.16 313.14 5.20 -66.96 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.99 Total: 7.33 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.13 Total: -30.09 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.75 Total: -73.45 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.05 Total: -16.19 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -72.16 5.20 -66.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082541128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.775 kcal (2) G-P(sol) polarization free energy of solvation -72.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds