Wall clock time and date at job start Mon Mar 30 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47525 * 2 1 4 4 N 1.31064 * 125.96188 * 84.25761 * 3 2 1 5 5 N 1.40296 * 108.27202 * 179.97438 * 4 3 2 6 6 C 1.46505 * 126.09298 * 179.97438 * 5 4 3 7 7 C 1.47200 * 109.46960 * 269.99999 * 6 5 4 8 8 N 6.34876 * 83.99054 * 16.13146 * 2 1 3 9 9 C 1.34325 * 107.81769 * 359.93758 * 5 4 3 10 10 C 1.35810 * 107.82571 * 0.06879 * 9 5 4 11 11 C 1.50842 * 124.06632 * 179.83492 * 10 9 5 12 12 H 1.09001 * 109.67655 * 103.21145 * 11 10 9 13 13 C 1.50694 * 109.68158 * 223.72809 * 11 10 9 14 14 H 1.08002 * 119.99760 * 54.19456 * 13 11 10 15 15 C 1.37875 * 120.00466 * 234.18884 * 13 11 10 16 16 N 1.31517 * 119.99849 * 9.40116 * 15 13 11 17 17 Si 1.86797 * 120.00448 * 189.40428 * 15 13 11 18 18 H 1.48495 * 109.47316 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47179 * 300.00257 * 17 15 13 20 20 H 1.48505 * 109.46909 * 59.99895 * 17 15 13 21 21 C 1.53360 * 108.41363 * 343.47493 * 11 10 9 22 22 C 1.53108 * 109.51319 * 49.93164 * 21 11 10 23 23 C 1.50818 * 128.03841 * 180.11824 * 9 5 4 24 24 H 1.09003 * 109.47514 * 183.96491 * 1 2 3 25 25 H 1.08995 * 109.47218 * 303.97766 * 1 2 3 26 26 H 1.09010 * 109.47042 * 63.97229 * 1 2 3 27 27 H 1.09003 * 109.47441 * 239.99836 * 2 1 3 28 28 H 1.09000 * 109.47375 * 120.00160 * 2 1 3 29 29 H 1.08996 * 109.46993 * 30.00207 * 6 5 4 30 30 H 1.09003 * 109.46825 * 150.00276 * 6 5 4 31 31 H 0.96999 * 119.99758 * 355.65118 * 16 15 13 32 32 H 1.08995 * 109.46092 * 169.94579 * 21 11 10 33 33 H 1.08997 * 109.46068 * 289.93100 * 21 11 10 34 34 H 1.08994 * 109.46375 * 49.74378 * 22 21 11 35 35 H 1.09000 * 109.46541 * 169.72055 * 22 21 11 36 36 H 1.09002 * 109.68186 * 43.67663 * 23 9 5 37 37 H 1.09005 * 109.71262 * 283.14073 * 23 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.1889 2.1818 1.0555 5 7 2.6753 3.4275 0.6314 6 6 2.9874 4.5708 1.4927 7 6 1.7902 5.4144 1.6413 8 7 0.8653 6.0653 1.7543 9 6 2.8046 3.3849 -0.7049 10 6 2.4124 2.1533 -1.1216 11 6 2.4074 1.7110 -2.5637 12 1 3.2623 1.0612 -2.7512 13 6 1.1305 0.9687 -2.8625 14 1 0.1764 1.4288 -2.6516 15 6 1.1801 -0.2978 -3.4052 16 7 2.3291 -0.9319 -3.4911 17 14 -0.3846 -1.1132 -4.0185 18 1 -0.0639 -2.4612 -4.5525 19 1 -1.3487 -1.2412 -2.8963 20 1 -0.9852 -0.2849 -5.0949 21 6 2.5008 2.9570 -3.4528 22 6 3.6561 3.8409 -2.9749 23 6 3.2922 4.4746 -1.6266 24 1 -0.3634 -1.0252 0.0711 25 1 -0.3633 0.5743 0.8522 26 1 -0.3634 0.4510 -0.9235 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3031 4.2122 2.4723 30 1 3.7903 5.1554 1.0436 31 1 3.1501 -0.4853 -3.2314 32 1 2.6779 2.6543 -4.4848 33 1 1.5672 3.5163 -3.3935 34 1 4.5543 3.2342 -2.8605 35 1 3.8396 4.6265 -3.7079 36 1 4.1722 4.9528 -1.1964 37 1 2.5050 5.2150 -1.7694 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:50 Heat of formation + Delta-G solvation = 86.594415 kcal Electronic energy + Delta-G solvation = -19770.327782 eV Core-core repulsion = 16934.750878 eV Total energy + Delta-G solvation = -2835.576904 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.99178 -36.88798 -36.02657 -34.58197 -32.72593 -31.36517 -29.44083 -28.74597 -26.62464 -24.53923 -22.93779 -22.04304 -21.22033 -18.96322 -18.37538 -17.90280 -16.80224 -16.08556 -14.81398 -14.43420 -13.97953 -13.87823 -13.71468 -13.58190 -13.24534 -12.93502 -12.71860 -12.64567 -12.30526 -12.17406 -11.95022 -11.63631 -11.34553 -10.86788 -10.66138 -10.61008 -10.42621 -10.32816 -10.14261 -10.05852 -9.58136 -9.39454 -8.63680 -8.52451 -8.33600 -7.37318 -6.31436 -4.00591 2.06655 2.39825 2.58842 3.29955 3.43771 3.45502 3.61709 3.63314 3.83164 4.52404 4.67184 4.96213 5.02608 5.30049 5.33871 5.44235 5.51806 5.76940 5.96006 6.07349 6.22524 6.26879 6.29820 6.32794 6.44005 6.45033 6.67233 6.74167 6.85495 7.02938 7.12494 7.20084 7.32470 7.36935 7.44770 7.51242 7.68709 8.23534 8.43383 8.46724 8.91204 9.65889 11.03394 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.007585 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.896343 B = 3690.726254 C = 4299.543641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C 0.116 3.884 4 N -0.316 5.316 5 N -0.392 5.392 6 C 0.242 3.758 7 C 0.189 3.811 8 N -0.414 5.414 9 C 0.042 3.958 10 C -0.165 4.165 11 C 0.089 3.911 12 H 0.054 0.946 13 C -0.573 4.573 14 H 0.048 0.952 15 C 0.029 3.971 16 N -0.911 5.911 17 Si 1.053 2.947 18 H -0.283 1.283 19 H -0.285 1.285 20 H -0.289 1.289 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.045 4.045 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.270 0.730 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 7.580 5.296 10.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 C -0.050 4.050 4 N -0.137 5.137 5 N -0.176 5.176 6 C 0.115 3.885 7 C -0.131 4.131 8 N -0.091 5.091 9 C -0.081 4.081 10 C -0.175 4.175 11 C 0.069 3.931 12 H 0.072 0.928 13 C -0.612 4.612 14 H 0.067 0.933 15 C -0.175 4.175 16 N -0.549 5.549 17 Si 0.882 3.118 18 H -0.209 1.209 19 H -0.211 1.211 20 H -0.215 1.215 21 C -0.145 4.145 22 C -0.153 4.153 23 C -0.084 4.084 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.596 7.329 6.159 9.919 hybrid contribution 0.876 1.392 -0.081 1.646 sum 3.472 8.721 6.078 11.183 Atomic orbital electron populations 1.21693 0.94941 1.00651 1.02316 1.19928 0.96044 0.88519 1.02893 1.22128 0.96052 0.96793 0.90057 1.77380 1.23172 0.90266 1.22861 1.47717 1.55527 1.10195 1.04206 1.18676 0.88551 0.82842 0.98383 1.29742 0.95497 0.94107 0.93743 1.81198 1.09696 1.10252 1.07965 1.20941 1.04876 0.98645 0.83656 1.20849 1.05641 0.92149 0.98872 1.17653 0.98619 0.92504 0.84308 0.92836 1.21691 0.91859 1.03077 1.44528 0.93334 1.25632 1.03038 0.94477 0.94356 1.70874 0.98998 1.38236 1.46766 0.83776 0.74917 0.76349 0.76802 1.20852 1.21142 1.21549 1.21807 0.95670 0.97261 0.99808 1.21633 1.00315 0.99060 0.94316 1.20205 0.99609 0.94319 0.94299 0.93259 0.94481 0.90523 0.87530 0.92895 0.84943 0.85297 0.91688 0.92770 0.93281 0.92036 0.92496 0.91542 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.78 37.15 0.36 -2.39 16 2 C -0.03 -0.72 5.63 -27.89 -0.16 -0.88 16 3 C 0.12 2.48 6.35 -82.55 -0.52 1.95 16 4 N -0.32 -6.27 12.59 33.58 0.42 -5.85 16 5 N -0.39 -6.52 3.56 -59.97 -0.21 -6.73 16 6 C 0.24 2.61 6.76 -6.83 -0.05 2.57 16 7 C 0.19 2.57 15.77 -20.74 -0.33 2.25 16 8 N -0.41 -6.74 18.54 42.18 0.78 -5.95 16 9 C 0.04 0.75 6.73 -82.31 -0.55 0.20 16 10 C -0.16 -3.53 5.42 -105.05 -0.57 -4.10 16 11 C 0.09 2.03 2.64 -92.67 -0.24 1.79 16 12 H 0.05 1.33 5.68 -51.93 -0.29 1.03 16 13 C -0.57 -14.39 5.29 -34.44 -0.18 -14.57 16 14 H 0.05 1.28 7.07 -52.49 -0.37 0.91 16 15 C 0.03 0.76 4.63 -17.82 -0.08 0.68 16 16 N -0.91 -24.89 13.46 55.43 0.75 -24.14 16 17 Si 1.05 23.70 29.91 -169.99 -5.09 18.62 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.11 -2.13 5.20 -26.49 -0.14 -2.27 16 22 C -0.12 -1.80 5.90 -26.49 -0.16 -1.96 16 23 C -0.05 -0.66 5.90 -27.64 -0.16 -0.82 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.69 6.04 -51.92 -0.31 1.38 16 27 H 0.11 2.49 6.25 -51.93 -0.32 2.17 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.13 0.88 7.57 -51.93 -0.39 0.49 16 31 H 0.27 7.35 6.28 -40.82 -0.26 7.09 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.74 7.76 -51.93 -0.40 0.34 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -30.20 305.23 -6.48 -36.68 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.95 Total: 0.33 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.78 Total: -17.56 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 1.74 Total: -42.68 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.09 Total: 18.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.20 -6.48 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.279 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds