Wall clock time and date at job start Mon Mar 30 2020 06:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47525 * 2 1 4 4 N 1.31064 * 125.96188 * 84.25761 * 3 2 1 5 5 N 1.40296 * 108.27202 * 179.97438 * 4 3 2 6 6 C 1.46505 * 126.09298 * 179.97438 * 5 4 3 7 7 C 1.47200 * 109.46960 * 269.99999 * 6 5 4 8 8 N 6.34876 * 83.99054 * 16.13146 * 2 1 3 9 9 C 1.34325 * 107.81769 * 359.93758 * 5 4 3 10 10 C 1.35810 * 107.82571 * 0.06879 * 9 5 4 11 11 C 1.50842 * 124.06632 * 179.83492 * 10 9 5 12 12 H 1.09001 * 109.67655 * 103.21145 * 11 10 9 13 13 C 1.50694 * 109.68158 * 223.72809 * 11 10 9 14 14 H 1.08002 * 119.99760 * 54.19456 * 13 11 10 15 15 C 1.37875 * 120.00466 * 234.18884 * 13 11 10 16 16 N 1.31517 * 119.99849 * 9.40116 * 15 13 11 17 17 Si 1.86797 * 120.00448 * 189.40428 * 15 13 11 18 18 H 1.48495 * 109.47316 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47179 * 300.00257 * 17 15 13 20 20 H 1.48505 * 109.46909 * 59.99895 * 17 15 13 21 21 C 1.53360 * 108.41363 * 343.47493 * 11 10 9 22 22 C 1.53108 * 109.51319 * 49.93164 * 21 11 10 23 23 C 1.50818 * 128.03841 * 180.11824 * 9 5 4 24 24 H 1.09003 * 109.47514 * 183.96491 * 1 2 3 25 25 H 1.08995 * 109.47218 * 303.97766 * 1 2 3 26 26 H 1.09010 * 109.47042 * 63.97229 * 1 2 3 27 27 H 1.09003 * 109.47441 * 239.99836 * 2 1 3 28 28 H 1.09000 * 109.47375 * 120.00160 * 2 1 3 29 29 H 1.08996 * 109.46993 * 30.00207 * 6 5 4 30 30 H 1.09003 * 109.46825 * 150.00276 * 6 5 4 31 31 H 0.96999 * 119.99758 * 355.65118 * 16 15 13 32 32 H 1.08995 * 109.46092 * 169.94579 * 21 11 10 33 33 H 1.08997 * 109.46068 * 289.93100 * 21 11 10 34 34 H 1.08994 * 109.46375 * 49.74378 * 22 21 11 35 35 H 1.09000 * 109.46541 * 169.72055 * 22 21 11 36 36 H 1.09002 * 109.68186 * 43.67663 * 23 9 5 37 37 H 1.09005 * 109.71262 * 283.14073 * 23 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.1889 2.1818 1.0555 5 7 2.6753 3.4275 0.6314 6 6 2.9874 4.5708 1.4927 7 6 1.7902 5.4144 1.6413 8 7 0.8653 6.0653 1.7543 9 6 2.8046 3.3849 -0.7049 10 6 2.4124 2.1533 -1.1216 11 6 2.4074 1.7110 -2.5637 12 1 3.2623 1.0612 -2.7512 13 6 1.1305 0.9687 -2.8625 14 1 0.1764 1.4288 -2.6516 15 6 1.1801 -0.2978 -3.4052 16 7 2.3291 -0.9319 -3.4911 17 14 -0.3846 -1.1132 -4.0185 18 1 -0.0639 -2.4612 -4.5525 19 1 -1.3487 -1.2412 -2.8963 20 1 -0.9852 -0.2849 -5.0949 21 6 2.5008 2.9570 -3.4528 22 6 3.6561 3.8409 -2.9749 23 6 3.2922 4.4746 -1.6266 24 1 -0.3634 -1.0252 0.0711 25 1 -0.3633 0.5743 0.8522 26 1 -0.3634 0.4510 -0.9235 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.3031 4.2122 2.4723 30 1 3.7903 5.1554 1.0436 31 1 3.1501 -0.4853 -3.2314 32 1 2.6779 2.6543 -4.4848 33 1 1.5672 3.5163 -3.3935 34 1 4.5543 3.2342 -2.8605 35 1 3.8396 4.6265 -3.7079 36 1 4.1722 4.9528 -1.1964 37 1 2.5050 5.2150 -1.7694 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082825562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:49 Heat of formation + Delta-G solvation = 69.179858 kcal Electronic energy + Delta-G solvation = -19771.082934 eV Core-core repulsion = 16934.750878 eV Total energy + Delta-G solvation = -2836.332056 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42390 -38.09332 -37.47417 -36.06604 -34.42205 -32.79297 -30.96775 -30.20949 -27.94456 -26.33945 -24.49613 -23.62425 -22.68466 -20.46766 -19.79460 -19.16314 -18.38486 -17.50429 -16.09981 -15.68287 -15.62932 -15.43294 -15.32429 -14.95518 -14.82949 -14.26896 -13.97859 -13.94500 -13.82675 -13.61496 -13.42272 -12.88888 -12.76980 -12.61638 -12.23778 -12.22804 -11.98547 -11.94617 -11.77467 -11.57248 -11.18140 -11.11415 -10.43390 -10.28901 -9.93514 -8.96979 -8.32959 -6.03301 0.80168 1.10994 1.57322 1.58186 1.62320 1.81066 2.02909 2.17818 2.65503 2.84739 3.35956 3.66515 3.76825 4.04903 4.18999 4.21626 4.32118 4.35092 4.60856 4.64898 4.69345 4.77968 4.86212 4.90017 4.93874 4.97360 5.14155 5.23688 5.26263 5.46065 5.51002 5.54784 5.67846 5.80946 5.97764 6.22501 6.31598 6.36263 6.40505 6.87177 6.95581 7.67656 8.99144 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.007585 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.896343 B = 3690.726254 C = 4299.543641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.033 4.033 3 C 0.092 3.908 4 N -0.329 5.329 5 N -0.381 5.381 6 C 0.233 3.767 7 C 0.212 3.788 8 N -0.466 5.466 9 C 0.064 3.936 10 C -0.215 4.215 11 C 0.088 3.912 12 H 0.023 0.977 13 C -0.564 4.564 14 H 0.029 0.971 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 1.083 2.917 18 H -0.287 1.287 19 H -0.272 1.272 20 H -0.280 1.280 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.043 4.043 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.167 0.833 30 H 0.185 0.815 31 H 0.259 0.741 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 10.027 6.448 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.073 4.073 4 N -0.151 5.151 5 N -0.164 5.164 6 C 0.110 3.890 7 C -0.107 4.107 8 N -0.144 5.144 9 C -0.062 4.062 10 C -0.226 4.226 11 C 0.068 3.932 12 H 0.041 0.959 13 C -0.603 4.603 14 H 0.048 0.952 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.908 3.092 18 H -0.213 1.213 19 H -0.197 1.197 20 H -0.206 1.206 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.082 4.082 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.184 0.816 30 H 0.202 0.798 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.700 9.797 7.339 12.788 hybrid contribution 0.570 0.734 -0.367 0.999 sum 4.269 10.532 6.973 13.333 Atomic orbital electron populations 1.21589 0.94547 1.01426 1.01142 1.19800 0.96388 0.89063 1.01953 1.22127 0.97298 0.97113 0.90776 1.77276 1.23734 0.91668 1.22423 1.48035 1.53462 1.10447 1.04493 1.19547 0.88392 0.81187 0.99899 1.30139 0.95150 0.93226 0.92174 1.81241 1.11166 1.12194 1.09804 1.21378 1.02012 0.98132 0.84637 1.20727 1.09447 0.94467 0.97962 1.17514 0.96072 0.93090 0.86566 0.95926 1.21798 0.92184 1.03008 1.43302 0.95243 1.26495 1.04265 0.95331 0.94585 1.70954 0.99204 1.38607 1.49035 0.83383 0.73160 0.75595 0.77103 1.21295 1.19701 1.20561 1.21661 0.97333 0.96819 0.98495 1.21560 0.97898 0.99091 0.96024 1.20413 1.01998 0.93136 0.92632 0.91780 0.93650 0.93160 0.90710 0.91448 0.81554 0.79780 0.92826 0.94288 0.94393 0.92215 0.89211 0.86301 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 9.78 71.98 0.70 -4.54 16 2 C -0.03 -1.40 5.63 29.84 0.17 -1.23 16 3 C 0.09 3.93 6.35 42.91 0.27 4.21 16 4 N -0.33 -12.51 12.59 -47.66 -0.60 -13.11 16 5 N -0.38 -11.28 3.56 -343.64 -1.22 -12.51 16 6 C 0.23 3.76 6.76 84.57 0.57 4.34 16 7 C 0.21 4.97 15.77 89.43 1.41 6.38 16 8 N -0.47 -14.09 18.54 20.01 0.37 -13.72 16 9 C 0.06 2.12 6.73 41.65 0.28 2.40 16 10 C -0.22 -9.21 5.42 -20.14 -0.11 -9.32 16 11 C 0.09 4.12 2.64 -12.12 -0.03 4.09 16 12 H 0.02 1.19 5.68 -2.39 -0.01 1.18 16 13 C -0.56 -29.53 5.29 25.60 0.14 -29.40 16 14 H 0.03 1.62 7.07 -2.91 -0.02 1.60 16 15 C -0.01 -0.41 4.63 84.65 0.39 -0.02 16 16 N -0.94 -53.69 13.46 21.45 0.29 -53.40 16 17 Si 1.08 49.04 29.91 68.60 2.05 51.09 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 C -0.10 -4.16 5.20 30.75 0.16 -4.00 16 22 C -0.11 -3.04 5.90 30.75 0.18 -2.86 16 23 C -0.04 -1.04 5.90 30.01 0.18 -0.86 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 2.29 6.04 -2.38 -0.01 2.27 16 27 H 0.07 3.69 6.25 -2.39 -0.01 3.67 16 28 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.17 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.19 1.07 7.57 -2.39 -0.02 1.05 16 31 H 0.26 15.01 6.28 -92.71 -0.58 14.43 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.06 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.12 1.73 7.76 -2.39 -0.02 1.71 16 37 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -70.78 305.23 6.46 -64.32 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.26 Total: 8.15 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.31 Total: -30.82 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -1.16 Total: -92.74 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.05 Total: 51.09 kcal Total: -70.78 6.46 -64.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.500 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds