Wall clock time and date at job start Mon Mar 30 2020 06:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46932 * 2 1 4 4 N 1.31069 * 125.95899 * 84.52030 * 3 2 1 5 5 N 1.40294 * 108.26729 * 179.97438 * 4 3 2 6 6 C 1.46500 * 126.09231 * 180.02562 * 5 4 3 7 7 C 1.47200 * 109.46918 * 90.02937 * 6 5 4 8 8 N 6.34926 * 128.58214 * 26.79301 * 2 1 3 9 9 C 1.34327 * 107.81947 * 0.05846 * 5 4 3 10 10 C 1.35752 * 107.83891 * 359.64108 * 9 5 4 11 11 C 1.50849 * 124.11000 * 180.45088 * 10 9 5 12 12 H 1.09001 * 109.68184 * 256.99864 * 11 10 9 13 13 C 1.50696 * 109.68252 * 136.47877 * 11 10 9 14 14 H 1.08004 * 120.00202 * 354.52400 * 13 11 10 15 15 C 1.37876 * 119.99799 * 174.52605 * 13 11 10 16 16 N 1.31511 * 120.00432 * 359.97438 * 15 13 11 17 17 Si 1.86810 * 119.99820 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46713 * 60.00236 * 17 15 13 19 19 H 1.48498 * 109.46805 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47032 * 300.00031 * 17 15 13 21 21 C 1.53360 * 108.37646 * 16.71858 * 11 10 9 22 22 C 1.53108 * 109.50757 * 310.04723 * 21 11 10 23 23 C 1.50824 * 128.03750 * 179.82355 * 9 5 4 24 24 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46751 * 299.99252 * 1 2 3 26 26 H 1.08993 * 109.47918 * 59.99853 * 1 2 3 27 27 H 1.08995 * 109.47450 * 120.00384 * 2 1 3 28 28 H 1.09001 * 109.47067 * 240.00337 * 2 1 3 29 29 H 1.09000 * 109.47317 * 210.02576 * 6 5 4 30 30 H 1.08995 * 109.47225 * 330.03573 * 6 5 4 31 31 H 0.96997 * 120.00469 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.46442 * 70.05498 * 21 11 10 33 33 H 1.09000 * 109.46575 * 190.03617 * 21 11 10 34 34 H 1.08998 * 109.46751 * 190.30178 * 22 21 11 35 35 H 1.09007 * 109.46115 * 310.27338 * 22 21 11 36 36 H 1.08998 * 109.68000 * 316.30778 * 23 9 5 37 37 H 1.08999 * 109.68223 * 76.85637 * 23 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1933 2.1803 1.0561 5 7 2.6777 3.4267 0.6317 6 6 2.9944 4.5684 1.4934 7 6 4.4030 4.4900 1.9137 8 7 5.4896 4.4305 2.2373 9 6 2.7988 3.3871 -0.7055 10 6 2.4126 2.1540 -1.1217 11 6 2.4137 1.7088 -2.5630 12 1 1.3956 1.7218 -2.9520 13 6 2.9775 0.3148 -2.6631 14 1 3.3853 -0.1671 -1.7868 15 6 2.9728 -0.3453 -3.8736 16 7 2.4758 0.2412 -4.9406 17 14 3.6723 -2.0731 -3.9979 18 1 2.9195 -2.9781 -3.0927 19 1 3.5488 -2.5575 -5.3962 20 1 5.1039 -2.0570 -3.6036 21 6 3.2869 2.6791 -3.3680 22 6 2.8687 4.1193 -3.0596 23 6 3.2755 4.4807 -1.6283 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.8304 5.4951 0.9436 30 1 2.3513 4.5490 2.3731 31 1 2.4728 -0.2231 -5.7922 32 1 4.3328 2.5382 -3.0953 33 1 3.1598 2.4840 -4.4329 34 1 3.3569 4.7971 -3.7598 35 1 1.7871 4.2125 -3.1583 36 1 2.8242 5.4292 -1.3373 37 1 4.3614 4.5586 -1.5749 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:52 Heat of formation + Delta-G solvation = 87.212275 kcal Electronic energy + Delta-G solvation = -19561.835388 eV Core-core repulsion = 16726.285276 eV Total energy + Delta-G solvation = -2835.550112 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99037 -36.87162 -35.85989 -34.52302 -32.57224 -31.51543 -29.51267 -28.72226 -26.59535 -25.02364 -23.11250 -21.74308 -21.07736 -19.01850 -18.09774 -17.82447 -16.59828 -15.99317 -14.84359 -14.60099 -14.30123 -13.80010 -13.73802 -13.30815 -13.06866 -12.76642 -12.65687 -12.61303 -12.46516 -12.17390 -11.86258 -11.59264 -11.16287 -11.06524 -10.86297 -10.78517 -10.49448 -10.38499 -10.10507 -9.90172 -9.64398 -9.28176 -8.83426 -8.53633 -8.38117 -7.36557 -6.00278 -4.02649 2.08107 2.40170 2.61844 3.31209 3.32700 3.37678 3.40710 3.59777 3.85105 4.45002 4.68954 4.98589 5.09656 5.29890 5.40488 5.46892 5.59150 5.81007 5.93997 6.04476 6.11903 6.28383 6.28826 6.44609 6.49272 6.56670 6.61390 6.79943 6.95650 7.01218 7.09797 7.33526 7.34678 7.48221 7.60747 7.73297 7.94309 8.01755 8.35269 8.48470 8.98708 9.59926 11.07272 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.007301 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.101633 B = 3834.061863 C = 4357.850236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C 0.106 3.894 4 N -0.315 5.315 5 N -0.391 5.391 6 C 0.242 3.758 7 C 0.189 3.811 8 N -0.413 5.413 9 C 0.052 3.948 10 C -0.168 4.168 11 C 0.117 3.883 12 H 0.041 0.959 13 C -0.505 4.505 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.884 3.116 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.106 4.106 22 C -0.115 4.115 23 C -0.047 4.047 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.261 0.739 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 8.077 6.871 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.060 4.060 4 N -0.136 5.136 5 N -0.175 5.175 6 C 0.116 3.884 7 C -0.131 4.131 8 N -0.090 5.090 9 C -0.071 4.071 10 C -0.178 4.178 11 C 0.098 3.902 12 H 0.059 0.941 13 C -0.543 4.543 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.712 3.288 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.086 4.086 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.138 0.862 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.951 8.156 8.497 11.939 hybrid contribution 0.238 -0.862 -0.952 1.306 sum -1.713 7.294 7.545 10.633 Atomic orbital electron populations 1.21606 0.95199 1.01101 1.01484 1.20348 0.95527 0.89275 1.04588 1.22099 0.97103 0.96474 0.90291 1.77358 1.23286 0.90248 1.22675 1.47701 1.54766 1.11061 1.04010 1.18675 0.84108 0.88796 0.96865 1.29654 0.95523 0.94047 0.93845 1.81146 1.12425 1.06832 1.08614 1.20920 1.04165 0.98506 0.83523 1.20695 1.06493 0.91508 0.99070 1.17317 0.96158 0.93458 0.83293 0.94101 1.21055 1.39616 0.99000 0.94586 0.92192 1.24923 0.95231 0.97555 0.95908 1.69896 1.45549 1.37461 0.99853 0.86781 0.79784 0.85192 0.77054 1.20084 1.21366 1.20405 1.21672 0.99100 0.90625 1.02967 1.21626 1.00991 0.99854 0.92886 1.20229 1.00204 0.93725 0.94489 0.92757 0.93723 0.92212 0.92200 0.86222 0.85202 0.84948 0.92954 0.94077 0.90078 0.92714 0.92287 0.91642 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.84 16 2 C -0.06 -1.09 6.18 -27.88 -0.17 -1.27 16 3 C 0.11 2.16 6.25 -82.52 -0.52 1.64 16 4 N -0.31 -5.99 12.59 33.59 0.42 -5.56 16 5 N -0.39 -6.36 3.56 -59.99 -0.21 -6.57 16 6 C 0.24 2.55 6.76 -6.83 -0.05 2.51 16 7 C 0.19 2.55 15.77 -20.78 -0.33 2.22 16 8 N -0.41 -6.70 18.53 42.13 0.78 -5.92 16 9 C 0.05 0.93 6.73 -82.33 -0.55 0.38 16 10 C -0.17 -3.54 5.40 -105.05 -0.57 -4.11 16 11 C 0.12 2.74 2.29 -92.67 -0.21 2.53 16 12 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.50 -12.89 6.64 -34.44 -0.23 -13.12 16 14 H 0.06 1.55 6.20 -52.48 -0.33 1.22 16 15 C 0.07 1.71 5.34 -17.82 -0.10 1.61 16 16 N -0.89 -24.01 11.96 55.43 0.66 -23.34 16 17 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.11 -2.30 4.94 -26.49 -0.13 -2.43 16 22 C -0.12 -1.96 5.88 -26.61 -0.16 -2.11 16 23 C -0.05 -0.71 5.90 -27.76 -0.16 -0.88 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.12 2.50 4.88 -51.93 -0.25 2.25 16 29 H 0.13 0.87 7.57 -51.93 -0.39 0.48 16 30 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.08 1.94 6.90 -51.93 -0.36 1.58 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.00 8.11 -51.92 -0.42 0.58 16 36 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.28 308.45 -6.62 -36.89 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.09 Total: -0.75 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.80 Total: -14.85 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 1.65 Total: -41.40 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.28 -6.62 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.104 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds