Wall clock time and date at job start Mon Mar 30 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46932 * 2 1 4 4 N 1.31069 * 125.95899 * 84.52030 * 3 2 1 5 5 N 1.40294 * 108.26729 * 179.97438 * 4 3 2 6 6 C 1.46500 * 126.09231 * 180.02562 * 5 4 3 7 7 C 1.47200 * 109.46918 * 90.02937 * 6 5 4 8 8 N 6.34926 * 128.58214 * 26.79301 * 2 1 3 9 9 C 1.34327 * 107.81947 * 0.05846 * 5 4 3 10 10 C 1.35752 * 107.83891 * 359.64108 * 9 5 4 11 11 C 1.50849 * 124.11000 * 180.45088 * 10 9 5 12 12 H 1.09001 * 109.68184 * 256.99864 * 11 10 9 13 13 C 1.50696 * 109.68252 * 136.47877 * 11 10 9 14 14 H 1.08004 * 120.00202 * 354.52400 * 13 11 10 15 15 C 1.37876 * 119.99799 * 174.52605 * 13 11 10 16 16 N 1.31511 * 120.00432 * 359.97438 * 15 13 11 17 17 Si 1.86810 * 119.99820 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46713 * 60.00236 * 17 15 13 19 19 H 1.48498 * 109.46805 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47032 * 300.00031 * 17 15 13 21 21 C 1.53360 * 108.37646 * 16.71858 * 11 10 9 22 22 C 1.53108 * 109.50757 * 310.04723 * 21 11 10 23 23 C 1.50824 * 128.03750 * 179.82355 * 9 5 4 24 24 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46751 * 299.99252 * 1 2 3 26 26 H 1.08993 * 109.47918 * 59.99853 * 1 2 3 27 27 H 1.08995 * 109.47450 * 120.00384 * 2 1 3 28 28 H 1.09001 * 109.47067 * 240.00337 * 2 1 3 29 29 H 1.09000 * 109.47317 * 210.02576 * 6 5 4 30 30 H 1.08995 * 109.47225 * 330.03573 * 6 5 4 31 31 H 0.96997 * 120.00469 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.46442 * 70.05498 * 21 11 10 33 33 H 1.09000 * 109.46575 * 190.03617 * 21 11 10 34 34 H 1.08998 * 109.46751 * 190.30178 * 22 21 11 35 35 H 1.09007 * 109.46115 * 310.27338 * 22 21 11 36 36 H 1.08998 * 109.68000 * 316.30778 * 23 9 5 37 37 H 1.08999 * 109.68223 * 76.85637 * 23 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1933 2.1803 1.0561 5 7 2.6777 3.4267 0.6317 6 6 2.9944 4.5684 1.4934 7 6 4.4030 4.4900 1.9137 8 7 5.4896 4.4305 2.2373 9 6 2.7988 3.3871 -0.7055 10 6 2.4126 2.1540 -1.1217 11 6 2.4137 1.7088 -2.5630 12 1 1.3956 1.7218 -2.9520 13 6 2.9775 0.3148 -2.6631 14 1 3.3853 -0.1671 -1.7868 15 6 2.9728 -0.3453 -3.8736 16 7 2.4758 0.2412 -4.9406 17 14 3.6723 -2.0731 -3.9979 18 1 2.9195 -2.9781 -3.0927 19 1 3.5488 -2.5575 -5.3962 20 1 5.1039 -2.0570 -3.6036 21 6 3.2869 2.6791 -3.3680 22 6 2.8687 4.1193 -3.0596 23 6 3.2755 4.4807 -1.6283 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.8304 5.4951 0.9436 30 1 2.3513 4.5490 2.3731 31 1 2.4728 -0.2231 -5.7922 32 1 4.3328 2.5382 -3.0953 33 1 3.1598 2.4840 -4.4329 34 1 3.3569 4.7971 -3.7598 35 1 1.7871 4.2125 -3.1583 36 1 2.8242 5.4292 -1.3373 37 1 4.3614 4.5586 -1.5749 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082825563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:51 Heat of formation + Delta-G solvation = 69.783054 kcal Electronic energy + Delta-G solvation = -19562.591176 eV Core-core repulsion = 16726.285276 eV Total energy + Delta-G solvation = -2836.305900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39180 -38.04032 -37.37181 -35.89995 -34.36906 -32.77750 -31.12619 -30.17786 -27.85789 -26.83578 -24.49940 -23.32481 -22.60429 -20.40407 -19.50811 -19.11247 -18.21227 -17.46926 -16.45839 -16.04484 -15.51535 -15.18704 -15.10905 -14.65530 -14.46246 -14.40408 -14.14301 -14.00063 -13.72904 -13.60005 -13.07525 -12.94321 -12.80958 -12.68694 -12.53719 -12.33702 -12.03583 -11.96259 -11.67474 -11.46754 -11.28369 -10.99371 -10.64041 -10.32953 -9.90439 -8.90243 -8.00262 -6.07551 0.83792 1.14544 1.44441 1.45624 1.51854 1.61864 2.05453 2.21516 2.50567 2.88797 3.27917 3.69296 3.81129 4.11761 4.25628 4.28304 4.38592 4.40417 4.63902 4.73380 4.76659 4.87375 4.97215 4.99334 5.03314 5.06469 5.20524 5.37119 5.41111 5.46323 5.54597 5.69230 5.73380 6.00439 6.06576 6.10548 6.28711 6.36781 6.52464 6.92675 7.01154 7.56683 9.05355 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019726 B = 0.007301 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.101633 B = 3834.061863 C = 4357.850236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 C 0.088 3.912 4 N -0.325 5.325 5 N -0.380 5.380 6 C 0.233 3.767 7 C 0.213 3.787 8 N -0.467 5.467 9 C 0.070 3.930 10 C -0.218 4.218 11 C 0.122 3.878 12 H 0.003 0.997 13 C -0.508 4.508 14 H 0.050 0.950 15 C 0.021 3.979 16 N -0.916 5.916 17 Si 0.934 3.066 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.281 1.281 21 C -0.100 4.100 22 C -0.108 4.108 23 C -0.043 4.043 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.184 0.816 30 H 0.169 0.831 31 H 0.259 0.741 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 10.223 8.435 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.077 4.077 4 N -0.147 5.147 5 N -0.164 5.164 6 C 0.110 3.890 7 C -0.106 4.106 8 N -0.145 5.145 9 C -0.055 4.055 10 C -0.228 4.228 11 C 0.102 3.898 12 H 0.021 0.979 13 C -0.546 4.546 14 H 0.068 0.932 15 C -0.178 4.178 16 N -0.555 5.555 17 Si 0.761 3.239 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.207 1.207 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.082 4.082 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.201 0.799 30 H 0.186 0.814 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.215 10.303 10.096 14.594 hybrid contribution 0.319 -1.470 -1.379 2.040 sum -1.895 8.833 8.717 12.554 Atomic orbital electron populations 1.21522 0.93470 1.02221 1.01159 1.20275 0.97079 0.89024 1.03487 1.22210 0.97823 0.97124 0.90524 1.77273 1.23821 0.91395 1.22186 1.48011 1.52923 1.11385 1.04078 1.19552 0.82676 0.88419 0.98364 1.30098 0.95717 0.92457 0.92364 1.81187 1.14304 1.08478 1.10578 1.21267 1.01551 0.98023 0.84689 1.20560 1.10446 0.93843 0.97971 1.17054 0.94047 0.93043 0.85636 0.97863 1.21329 1.38758 1.00419 0.94076 0.93157 1.25528 0.95884 1.00523 0.95821 1.70011 1.46940 1.38536 1.00055 0.85975 0.78901 0.81968 0.77045 1.19292 1.21138 1.20685 1.21474 0.97684 0.94076 1.00599 1.21519 1.01171 0.96633 0.95324 1.20374 1.01027 0.94824 0.91971 0.90949 0.92390 0.93996 0.91181 0.89181 0.79864 0.81351 0.93210 0.95821 0.93254 0.90068 0.92366 0.86181 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.89 71.98 0.71 -3.36 16 2 C -0.06 -2.27 6.18 29.85 0.18 -2.09 16 3 C 0.09 3.57 6.25 42.93 0.27 3.84 16 4 N -0.33 -11.73 12.59 -47.63 -0.60 -12.33 16 5 N -0.38 -11.00 3.56 -343.69 -1.22 -12.23 16 6 C 0.23 3.66 6.76 84.57 0.57 4.23 16 7 C 0.21 4.96 15.77 89.45 1.41 6.37 16 8 N -0.47 -14.17 18.53 20.00 0.37 -13.80 16 9 C 0.07 2.34 6.73 41.64 0.28 2.63 16 10 C -0.22 -9.21 5.40 -20.14 -0.11 -9.32 16 11 C 0.12 5.92 2.29 -12.12 -0.03 5.89 16 12 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 13 C -0.51 -27.11 6.64 25.60 0.17 -26.94 16 14 H 0.05 2.72 6.20 -2.91 -0.02 2.71 16 15 C 0.02 1.14 5.34 84.66 0.45 1.59 16 16 N -0.92 -51.55 11.96 21.45 0.26 -51.29 16 17 Si 0.93 43.24 29.54 68.60 2.03 45.27 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 C -0.10 -4.45 4.94 30.75 0.15 -4.30 16 22 C -0.11 -3.45 5.88 30.67 0.18 -3.27 16 23 C -0.04 -1.12 5.90 29.93 0.18 -0.94 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.09 3.95 4.88 -2.39 -0.01 3.94 16 29 H 0.18 1.04 7.57 -2.39 -0.02 1.02 16 30 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.02 1.08 8.09 -2.39 -0.02 1.06 16 33 H 0.05 2.46 6.90 -2.39 -0.02 2.44 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.87 8.11 -2.38 -0.02 1.85 16 36 H 0.12 1.89 7.76 -2.39 -0.02 1.87 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -70.68 308.45 6.33 -64.35 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.07 Total: 5.71 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 4.42 Total: -25.67 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -1.20 Total: -89.65 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.68 6.33 -64.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.133 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds