Wall clock time and date at job start Mon Mar 30 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21316 * 119.99825 * 2 1 4 4 C 1.46755 * 120.00126 * 179.97438 * 2 1 3 5 5 C 1.40104 * 120.09066 * 185.57906 * 4 2 1 6 6 C 1.36553 * 119.89696 * 180.02562 * 5 4 2 7 7 C 1.39306 * 120.09707 * 359.97438 * 6 5 4 8 8 N 1.38891 * 119.90437 * 179.97438 * 7 6 5 9 9 C 1.47846 * 111.00144 * 21.54483 * 8 7 6 10 10 C 1.54899 * 104.79687 * 146.36270 * 9 8 7 11 11 C 1.55141 * 101.65602 * 322.93115 * 10 9 8 12 12 H 1.08990 * 110.85652 * 277.19879 * 11 10 9 13 13 C 1.50697 * 110.70586 * 154.03186 * 11 10 9 14 14 H 1.08000 * 120.00581 * 272.82805 * 13 11 10 15 15 C 1.37884 * 120.00010 * 92.55668 * 13 11 10 16 16 N 1.31513 * 120.00140 * 181.38921 * 15 13 11 17 17 Si 1.86800 * 119.99698 * 1.38250 * 15 13 11 18 18 H 1.48502 * 109.46983 * 86.48034 * 17 15 13 19 19 H 1.48501 * 109.47143 * 206.48382 * 17 15 13 20 20 H 1.48501 * 109.47214 * 326.48258 * 17 15 13 21 21 C 1.47445 * 111.00207 * 142.38794 * 8 7 6 22 22 C 1.39310 * 120.19157 * 0.25577 * 7 6 5 23 23 C 1.36551 * 120.09818 * 359.48688 * 22 7 6 24 24 H 1.08994 * 109.46801 * 181.58149 * 1 2 3 25 25 H 1.09002 * 109.47092 * 301.58203 * 1 2 3 26 26 H 1.09001 * 109.46455 * 61.58485 * 1 2 3 27 27 H 1.07995 * 120.05692 * 0.04491 * 5 4 2 28 28 H 1.08002 * 119.94750 * 180.02562 * 6 5 4 29 29 H 1.08996 * 110.37696 * 265.19666 * 9 8 7 30 30 H 1.09002 * 110.36860 * 27.53518 * 9 8 7 31 31 H 1.09002 * 110.99625 * 204.83818 * 10 9 8 32 32 H 1.09007 * 110.99053 * 81.02361 * 10 9 8 33 33 H 0.97002 * 119.99839 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.88989 * 117.33622 * 21 8 7 35 35 H 1.08999 * 110.02116 * 356.22569 * 21 8 7 36 36 H 1.08008 * 119.95098 * 179.71892 * 22 7 6 37 37 H 1.07995 * 120.04696 * 180.23508 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2409 -1.2709 0.0006 5 6 3.6369 -1.2759 0.1184 6 6 4.3158 -2.4608 0.1180 7 6 3.6222 -3.6632 0.0011 8 7 4.3168 -4.8660 0.0006 9 6 5.6460 -4.7105 0.6288 10 6 5.9123 -6.0650 1.3316 11 6 4.4966 -6.4337 1.8481 12 1 4.2852 -5.9321 2.7923 13 6 4.3559 -7.9267 1.9970 14 1 4.0428 -8.5263 1.1550 15 6 4.6321 -8.5280 3.2066 16 7 4.5357 -9.8339 3.3291 17 14 5.1435 -7.4878 4.6715 18 1 3.9325 -7.0072 5.3842 19 1 5.9696 -8.3059 5.5953 20 1 5.9348 -6.3232 4.1995 21 6 3.5710 -5.9072 0.7313 22 6 2.2345 -3.6625 -0.1211 23 6 1.5472 -2.4826 -0.1163 24 1 -0.3633 -1.0272 0.0284 25 1 -0.3633 0.5382 0.8755 26 1 -0.3632 0.4890 -0.9039 27 1 4.1754 -0.3443 0.2098 28 1 5.3919 -2.4656 0.2092 29 1 6.4048 -4.5213 -0.1304 30 1 5.6283 -3.9013 1.3588 31 1 6.6109 -5.9447 2.1596 32 1 6.2749 -6.8086 0.6218 33 1 4.7304 -10.2569 4.1800 34 1 3.3082 -6.7195 0.0537 35 1 2.6675 -5.4819 1.1682 36 1 1.7010 -4.5969 -0.2160 37 1 0.4711 -2.4832 -0.2073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084506275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:15 Heat of formation + Delta-G solvation = -3.762003 kcal Electronic energy + Delta-G solvation = -18749.185641 eV Core-core repulsion = 15877.397837 eV Total energy + Delta-G solvation = -2871.787804 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46563 -39.20183 -37.14118 -33.48469 -31.98506 -31.57064 -30.35864 -28.64347 -28.11568 -24.90619 -23.28376 -22.18787 -21.02723 -19.53905 -19.36623 -17.63157 -17.28005 -16.08400 -15.58268 -15.07786 -14.91671 -14.71531 -14.37763 -13.97156 -13.70340 -13.27504 -13.02461 -12.71994 -12.50552 -12.34405 -12.22417 -12.09822 -11.99295 -11.31360 -11.01851 -10.79514 -10.69047 -10.33462 -10.01520 -9.82216 -9.74655 -9.51694 -9.23461 -9.02283 -8.66794 -7.61545 -6.20851 -4.21327 0.74472 1.49950 2.42647 3.18297 3.27651 3.28196 3.78108 4.08883 4.24680 4.29484 4.70944 4.90311 4.95458 5.03428 5.23766 5.24762 5.27037 5.35041 5.49183 5.59837 5.65421 5.76853 5.82136 5.83567 5.99142 6.04962 6.25874 6.33477 6.37823 6.45493 6.55886 6.60361 6.80566 6.92131 7.02137 7.30754 7.48566 7.53440 7.58425 8.37067 8.82933 9.40751 10.91822 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032073 B = 0.004539 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.793691 B = 6167.089922 C = 6276.211678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.400 3.600 3 O -0.478 6.478 4 C -0.231 4.231 5 C -0.025 4.025 6 C -0.193 4.193 7 C 0.170 3.830 8 N -0.479 5.479 9 C 0.034 3.966 10 C -0.131 4.131 11 C 0.003 3.997 12 H 0.037 0.963 13 C -0.510 4.510 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.049 3.951 22 C -0.179 4.179 23 C -0.039 4.039 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 14.765 -5.355 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.281 3.719 3 O -0.356 6.356 4 C -0.233 4.233 5 C -0.044 4.044 6 C -0.214 4.214 7 C 0.066 3.934 8 N -0.189 5.189 9 C -0.092 4.092 10 C -0.170 4.170 11 C -0.017 4.017 12 H 0.055 0.945 13 C -0.548 4.548 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.075 4.075 22 C -0.200 4.200 23 C -0.058 4.058 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.152 0.848 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.407 14.851 -5.729 16.516 hybrid contribution 0.210 0.456 1.419 1.505 sum -4.197 15.307 -4.311 16.447 Atomic orbital electron populations 1.22235 0.94430 1.04709 1.04532 1.22307 0.91387 0.87774 0.70416 1.90517 1.72162 1.34584 1.38313 1.20230 0.94565 0.94447 1.14051 1.20920 0.93052 0.97955 0.92471 1.20809 1.00593 0.91421 1.08582 1.19653 0.92652 0.90492 0.90607 1.60053 1.04941 1.05154 1.48724 1.23366 0.88850 0.99877 0.97077 1.23134 1.00610 0.93775 0.99472 1.20276 0.90261 0.97887 0.93240 0.94454 1.20877 1.46501 0.88999 0.98423 0.90474 1.25043 0.94463 0.94778 0.98603 1.69888 1.48612 1.09024 1.25727 0.86895 0.79196 0.80725 0.82840 1.20194 1.21345 1.18941 1.23308 0.96088 0.92322 0.95771 1.20693 0.92641 0.98993 1.07681 1.21040 0.99603 0.91171 0.93974 0.89803 0.89114 0.89101 0.85416 0.85143 0.90538 0.92514 0.91769 0.90542 0.92445 0.89603 0.92213 0.84827 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 10.18 36.01 0.37 -1.26 16 2 C 0.40 4.89 7.20 -30.87 -0.22 4.67 16 3 O -0.48 -7.34 17.09 5.53 0.09 -7.25 16 4 C -0.23 -2.97 5.87 -105.06 -0.62 -3.59 16 5 C -0.02 -0.34 9.54 -39.49 -0.38 -0.72 16 6 C -0.19 -2.73 8.59 -39.79 -0.34 -3.07 16 7 C 0.17 2.62 5.77 -83.87 -0.48 2.13 16 8 N -0.48 -8.13 5.25 -167.92 -0.88 -9.01 16 9 C 0.03 0.54 5.46 -2.30 -0.01 0.53 16 10 C -0.13 -2.53 6.42 -24.60 -0.16 -2.69 16 11 C 0.00 0.07 2.31 -89.95 -0.21 -0.14 16 12 H 0.04 0.83 5.87 -51.93 -0.30 0.52 16 13 C -0.51 -13.35 8.90 -34.44 -0.31 -13.66 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -26.17 13.96 55.43 0.77 -25.40 16 17 Si 0.88 20.47 26.90 -169.99 -4.57 15.89 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.26 -5.85 6.14 56.52 0.35 -5.51 16 21 C 0.05 0.92 5.73 -2.84 -0.02 0.90 16 22 C -0.18 -2.46 8.51 -39.79 -0.34 -2.80 16 23 C -0.04 -0.46 9.37 -39.49 -0.37 -0.83 16 24 H 0.08 0.53 5.63 -51.93 -0.29 0.24 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.13 1.64 7.65 -52.49 -0.40 1.24 16 28 H 0.13 1.68 6.31 -52.49 -0.33 1.35 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 31 H 0.06 1.23 7.32 -51.93 -0.38 0.85 16 32 H 0.08 1.53 8.04 -51.92 -0.42 1.11 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.09 1.67 7.67 -51.93 -0.40 1.27 16 35 H 0.06 1.05 6.03 -51.93 -0.31 0.73 16 36 H 0.13 1.74 6.85 -52.48 -0.36 1.38 16 37 H 0.13 1.10 5.97 -52.49 -0.31 0.79 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -29.84 297.20 -8.00 -37.84 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.71 Total: 2.06 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -3.18 Total: -18.62 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.11 Total: -34.41 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.09 Total: -7.25 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.57 Total: 15.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.84 -8.00 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.082 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds