Wall clock time and date at job start Mon Mar 30 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21316 * 119.99825 * 2 1 4 4 C 1.46755 * 120.00126 * 179.97438 * 2 1 3 5 5 C 1.40104 * 120.09066 * 185.57906 * 4 2 1 6 6 C 1.36553 * 119.89696 * 180.02562 * 5 4 2 7 7 C 1.39306 * 120.09707 * 359.97438 * 6 5 4 8 8 N 1.38891 * 119.90437 * 179.97438 * 7 6 5 9 9 C 1.47846 * 111.00144 * 21.54483 * 8 7 6 10 10 C 1.54899 * 104.79687 * 146.36270 * 9 8 7 11 11 C 1.55141 * 101.65602 * 322.93115 * 10 9 8 12 12 H 1.08990 * 110.85652 * 277.19879 * 11 10 9 13 13 C 1.50697 * 110.70586 * 154.03186 * 11 10 9 14 14 H 1.08000 * 120.00581 * 272.82805 * 13 11 10 15 15 C 1.37884 * 120.00010 * 92.55668 * 13 11 10 16 16 N 1.31513 * 120.00140 * 181.38921 * 15 13 11 17 17 Si 1.86800 * 119.99698 * 1.38250 * 15 13 11 18 18 H 1.48502 * 109.46983 * 86.48034 * 17 15 13 19 19 H 1.48501 * 109.47143 * 206.48382 * 17 15 13 20 20 H 1.48501 * 109.47214 * 326.48258 * 17 15 13 21 21 C 1.47445 * 111.00207 * 142.38794 * 8 7 6 22 22 C 1.39310 * 120.19157 * 0.25577 * 7 6 5 23 23 C 1.36551 * 120.09818 * 359.48688 * 22 7 6 24 24 H 1.08994 * 109.46801 * 181.58149 * 1 2 3 25 25 H 1.09002 * 109.47092 * 301.58203 * 1 2 3 26 26 H 1.09001 * 109.46455 * 61.58485 * 1 2 3 27 27 H 1.07995 * 120.05692 * 0.04491 * 5 4 2 28 28 H 1.08002 * 119.94750 * 180.02562 * 6 5 4 29 29 H 1.08996 * 110.37696 * 265.19666 * 9 8 7 30 30 H 1.09002 * 110.36860 * 27.53518 * 9 8 7 31 31 H 1.09002 * 110.99625 * 204.83818 * 10 9 8 32 32 H 1.09007 * 110.99053 * 81.02361 * 10 9 8 33 33 H 0.97002 * 119.99839 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.88989 * 117.33622 * 21 8 7 35 35 H 1.08999 * 110.02116 * 356.22569 * 21 8 7 36 36 H 1.08008 * 119.95098 * 179.71892 * 22 7 6 37 37 H 1.07995 * 120.04696 * 180.23508 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2409 -1.2709 0.0006 5 6 3.6369 -1.2759 0.1184 6 6 4.3158 -2.4608 0.1180 7 6 3.6222 -3.6632 0.0011 8 7 4.3168 -4.8660 0.0006 9 6 5.6460 -4.7105 0.6288 10 6 5.9123 -6.0650 1.3316 11 6 4.4966 -6.4337 1.8481 12 1 4.2852 -5.9321 2.7923 13 6 4.3559 -7.9267 1.9970 14 1 4.0428 -8.5263 1.1550 15 6 4.6321 -8.5280 3.2066 16 7 4.5357 -9.8339 3.3291 17 14 5.1435 -7.4878 4.6715 18 1 3.9325 -7.0072 5.3842 19 1 5.9696 -8.3059 5.5953 20 1 5.9348 -6.3232 4.1995 21 6 3.5710 -5.9072 0.7313 22 6 2.2345 -3.6625 -0.1211 23 6 1.5472 -2.4826 -0.1163 24 1 -0.3633 -1.0272 0.0284 25 1 -0.3633 0.5382 0.8755 26 1 -0.3632 0.4890 -0.9039 27 1 4.1754 -0.3443 0.2098 28 1 5.3919 -2.4656 0.2092 29 1 6.4048 -4.5213 -0.1304 30 1 5.6283 -3.9013 1.3588 31 1 6.6109 -5.9447 2.1596 32 1 6.2749 -6.8086 0.6218 33 1 4.7304 -10.2569 4.1800 34 1 3.3082 -6.7195 0.0537 35 1 2.6675 -5.4819 1.1682 36 1 1.7010 -4.5969 -0.2160 37 1 0.4711 -2.4832 -0.2073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084506275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:15 Heat of formation + Delta-G solvation = -21.967619 kcal Electronic energy + Delta-G solvation = -18749.975096 eV Core-core repulsion = 15877.397837 eV Total energy + Delta-G solvation = -2872.577259 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61609 -40.30856 -38.35283 -35.20704 -33.50483 -32.67462 -31.47870 -30.02251 -29.21535 -26.60395 -24.45518 -23.40836 -22.25122 -21.04414 -20.48113 -19.27355 -18.71130 -17.19763 -16.67002 -16.62926 -15.98439 -15.85464 -15.63193 -15.27001 -14.92785 -14.62921 -14.52168 -14.24270 -13.66637 -13.55840 -13.37067 -13.04366 -12.92277 -12.91044 -12.50206 -12.46540 -12.00530 -11.78932 -11.71822 -11.56956 -11.17351 -10.75960 -10.70773 -10.67643 -10.04586 -8.80908 -8.30455 -6.34623 -0.28611 0.48070 1.34158 1.36168 1.44068 1.46043 2.33244 2.68754 3.02773 3.04994 3.24930 3.71530 3.84357 3.94934 4.05816 4.20437 4.22576 4.34126 4.36991 4.50663 4.59297 4.64044 4.69054 4.73361 4.82527 4.95901 5.01938 5.06091 5.13013 5.17483 5.30404 5.35278 5.43582 5.46649 5.64621 5.74914 5.95561 6.24949 6.32488 6.61520 6.71301 7.30512 8.85998 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032073 B = 0.004539 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.793691 B = 6167.089922 C = 6276.211678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.400 3.600 3 O -0.515 6.515 4 C -0.235 4.235 5 C -0.037 4.037 6 C -0.193 4.193 7 C 0.144 3.856 8 N -0.486 5.486 9 C 0.042 3.958 10 C -0.129 4.129 11 C -0.005 4.005 12 H 0.039 0.961 13 C -0.509 4.509 14 H 0.036 0.964 15 C 0.015 3.985 16 N -0.948 5.948 17 Si 0.939 3.061 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.242 1.242 21 C 0.060 3.940 22 C -0.187 4.187 23 C -0.027 4.027 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.266 0.734 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 17.465 -5.177 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.283 3.717 3 O -0.396 6.396 4 C -0.237 4.237 5 C -0.056 4.056 6 C -0.214 4.214 7 C 0.042 3.958 8 N -0.196 5.196 9 C -0.083 4.083 10 C -0.168 4.168 11 C -0.024 4.024 12 H 0.057 0.943 13 C -0.547 4.547 14 H 0.054 0.946 15 C -0.182 4.182 16 N -0.587 5.587 17 Si 0.763 3.237 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.165 1.165 21 C -0.065 4.065 22 C -0.208 4.208 23 C -0.045 4.045 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.298 17.582 -5.575 19.191 hybrid contribution 0.406 -0.349 1.263 1.372 sum -4.891 17.234 -4.313 18.426 Atomic orbital electron populations 1.22273 0.90791 1.06546 1.05730 1.22865 0.93310 0.86693 0.68788 1.90514 1.73314 1.35631 1.40131 1.20560 0.94559 0.95497 1.13075 1.21079 0.93821 0.97924 0.92772 1.20902 1.01174 0.91096 1.08204 1.19804 0.93503 0.90036 0.92449 1.60086 1.04993 1.05575 1.48980 1.23351 0.89188 0.98032 0.97744 1.22979 0.98814 0.95406 0.99560 1.20260 0.92831 0.94746 0.94600 0.94277 1.21120 1.45171 0.91410 0.97037 0.94573 1.25891 0.94785 0.95775 1.01775 1.70041 1.50972 1.11138 1.26595 0.85874 0.79239 0.79615 0.78962 1.19430 1.21571 1.16495 1.23026 0.96126 0.92726 0.94623 1.20896 0.92259 1.00047 1.07591 1.21372 1.01385 0.89759 0.92004 0.87663 0.87988 0.87626 0.85188 0.84181 0.88434 0.91166 0.91355 0.92049 0.92482 0.91346 0.90985 0.84424 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 10.18 71.24 0.73 -1.65 16 2 C 0.40 8.67 7.20 27.92 0.20 8.87 16 3 O -0.52 -14.99 17.09 -3.14 -0.05 -15.04 16 4 C -0.23 -5.39 5.87 -20.15 -0.12 -5.50 16 5 C -0.04 -0.93 9.54 22.33 0.21 -0.72 16 6 C -0.19 -5.03 8.59 22.13 0.19 -4.84 16 7 C 0.14 4.15 5.77 38.54 0.22 4.37 16 8 N -0.49 -15.76 5.25 -685.17 -3.60 -19.36 16 9 C 0.04 1.27 5.46 86.77 0.47 1.74 16 10 C -0.13 -4.85 6.42 31.98 0.21 -4.64 16 11 C 0.00 -0.20 2.31 -10.36 -0.02 -0.22 16 12 H 0.04 1.67 5.87 -2.39 -0.01 1.65 16 13 C -0.51 -27.43 8.90 25.60 0.23 -27.20 16 14 H 0.04 2.18 7.84 -2.91 -0.02 2.16 16 15 C 0.02 0.85 5.47 84.66 0.46 1.31 16 16 N -0.95 -57.31 13.96 21.45 0.30 -57.01 16 17 Si 0.94 41.99 26.90 68.60 1.85 43.83 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.24 -9.79 6.14 99.48 0.61 -9.18 16 21 C 0.06 2.21 5.73 86.65 0.50 2.70 16 22 C -0.19 -4.68 8.51 22.13 0.19 -4.49 16 23 C -0.03 -0.54 9.37 22.33 0.21 -0.33 16 24 H 0.10 0.80 5.63 -2.39 -0.01 0.78 16 25 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.13 3.17 7.65 -2.91 -0.02 3.14 16 28 H 0.14 3.27 6.31 -2.91 -0.02 3.25 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.07 1.95 6.40 -2.39 -0.02 1.93 16 31 H 0.07 2.48 7.32 -2.39 -0.02 2.46 16 32 H 0.06 2.46 8.04 -2.38 -0.02 2.44 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.07 2.73 7.67 -2.39 -0.02 2.71 16 35 H 0.07 2.44 6.03 -2.39 -0.01 2.42 16 36 H 0.14 3.29 6.85 -2.91 -0.02 3.27 16 37 H 0.17 2.00 5.97 -2.91 -0.02 1.98 16 Total: -1.00 -66.56 297.20 3.15 -63.42 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.98 Total: 14.76 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 3.67 Total: -30.60 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -3.30 Total: -76.37 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.05 Total: -15.04 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.85 Total: 43.83 kcal Total: -66.56 3.15 -63.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084506275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.448 kcal (2) G-P(sol) polarization free energy of solvation -66.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds