Wall clock time and date at job start Mon Mar 30 2020 07:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47205 * 274.25414 * 3 2 1 5 5 H 1.48496 * 109.47468 * 34.26004 * 3 2 1 6 6 H 1.48505 * 109.47075 * 154.25576 * 3 2 1 7 7 C 1.37879 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99741 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00453 * 180.29457 * 7 2 1 10 10 C 1.52995 * 115.55145 * 94.43560 * 9 7 2 11 11 N 1.46901 * 109.47336 * 304.98740 * 10 9 7 12 12 C 1.46902 * 110.99927 * 185.66354 * 11 10 9 13 13 C 1.53004 * 109.47125 * 184.29952 * 12 11 10 14 14 C 1.52991 * 109.47107 * 184.85919 * 13 12 11 15 15 C 1.50703 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.38231 * 119.99826 * 269.72001 * 15 14 13 17 17 C 1.38244 * 119.99868 * 179.76300 * 16 15 14 18 18 C 1.38231 * 119.99824 * 0.51724 * 17 16 15 19 19 C 1.38240 * 120.00146 * 359.73996 * 18 17 16 20 20 C 1.38231 * 120.00009 * 90.00026 * 15 14 13 21 21 C 1.53008 * 117.49605 * 308.77003 * 9 7 2 22 22 C 1.53000 * 117.49717 * 240.11062 * 9 7 2 23 23 H 0.97005 * 120.00308 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47349 * 64.99309 * 10 9 7 25 25 H 1.09001 * 109.47154 * 184.98948 * 10 9 7 26 26 H 1.00897 * 110.99949 * 61.71548 * 11 10 9 27 27 H 1.08997 * 109.47210 * 304.30192 * 12 11 10 28 28 H 1.09002 * 109.47251 * 64.30164 * 12 11 10 29 29 H 1.09002 * 109.46786 * 304.85835 * 13 12 11 30 30 H 1.08995 * 109.46843 * 64.85710 * 13 12 11 31 31 H 1.09002 * 109.47229 * 299.99644 * 14 13 12 32 32 H 1.08997 * 109.47646 * 59.99406 * 14 13 12 33 33 H 1.07996 * 120.00512 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.99813 * 180.23051 * 17 16 15 35 35 H 1.08004 * 120.00393 * 179.72007 * 18 17 16 36 36 H 1.08000 * 119.99986 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.00437 * 359.97438 * 20 15 14 38 38 H 1.09000 * 117.49507 * 359.97438 * 21 9 7 39 39 H 1.08997 * 117.50070 * 145.02119 * 21 9 7 40 40 H 1.09007 * 117.49514 * 214.97301 * 22 9 7 41 41 H 1.09000 * 117.50152 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4067 2.0984 -1.3962 5 1 1.4946 2.6250 0.7881 6 1 3.5888 1.4158 0.6081 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0072 10 6 4.1652 -1.3038 1.3861 11 7 3.6561 -0.2350 2.2559 12 6 4.3597 -0.2258 3.5454 13 6 3.7321 0.8269 4.4613 14 6 4.5392 0.9216 5.7576 15 6 3.9213 1.9589 6.6594 16 6 4.3355 3.2755 6.5837 17 6 3.7652 4.2280 7.4076 18 6 2.7884 3.8618 8.3145 19 6 2.3780 2.5441 8.3939 20 6 2.9445 1.5927 7.5663 21 6 4.2226 -0.3420 -1.0460 22 6 4.2231 -1.8680 -1.1677 23 1 -0.4851 0.8401 -0.0004 24 1 3.9280 -2.2731 1.8246 25 1 5.2460 -1.2058 1.2846 26 1 2.6596 -0.3206 2.3884 27 1 4.2778 -1.2079 4.0111 28 1 5.4109 0.0133 3.3841 29 1 3.7363 1.7944 3.9592 30 1 2.7057 0.5419 4.6924 31 1 4.5350 -0.0458 6.2597 32 1 5.5656 1.2065 5.5265 33 1 5.1016 3.5610 5.8780 34 1 4.0862 5.2573 7.3458 35 1 2.3460 4.6050 8.9613 36 1 1.6151 2.2579 9.1027 37 1 2.6238 0.5633 7.6284 38 1 3.6004 0.2182 -1.7439 39 1 5.1564 0.1400 -0.7567 40 1 5.1573 -2.3891 -0.9583 41 1 3.6013 -2.3116 -1.9453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:20 Heat of formation + Delta-G solvation = 39.824589 kcal Electronic energy + Delta-G solvation = -18706.313236 eV Core-core repulsion = 15972.248584 eV Total energy + Delta-G solvation = -2734.064653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.36312 -37.43488 -35.60978 -33.24963 -31.98130 -30.95043 -29.90052 -26.43421 -25.26250 -23.47285 -22.63669 -21.63898 -21.31476 -20.74765 -18.73896 -16.83691 -16.20122 -15.72886 -15.31211 -14.94684 -14.75547 -14.24064 -13.96867 -13.60773 -13.44722 -13.27806 -12.88904 -12.45161 -12.42052 -11.97963 -11.79186 -11.53647 -11.30888 -11.10741 -10.96658 -10.67848 -10.53550 -10.42940 -10.20892 -9.83721 -9.36634 -8.98694 -8.93845 -8.72605 -8.51412 -8.38396 -7.37878 -6.00299 -4.07069 1.29870 1.33411 3.49666 3.61143 3.71637 3.90246 4.61998 4.67040 4.76807 4.82822 4.93494 5.04799 5.16036 5.20890 5.31973 5.43346 5.46449 5.53306 5.62606 5.72836 5.85069 5.90171 5.97003 6.00206 6.03815 6.16303 6.24753 6.36798 6.39344 6.43419 6.43951 6.50014 6.57903 6.59093 6.64090 6.81943 6.94919 7.13356 7.20502 7.83347 7.93156 8.23528 8.57451 8.99177 9.63790 11.09490 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.004489 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.392499 B = 6235.393827 C = 6660.773784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.081 3.919 3 Si 0.872 3.128 4 H -0.298 1.298 5 H -0.305 1.305 6 H -0.207 1.207 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.009 3.991 10 C 0.103 3.897 11 N -0.679 5.679 12 C 0.059 3.941 13 C -0.114 4.114 14 C -0.079 4.079 15 C -0.074 4.074 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.194 4.194 22 C -0.188 4.188 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.046 0.954 26 H 0.354 0.646 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.360 4.862 15.033 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.226 1.226 5 H -0.233 1.233 6 H -0.128 1.128 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.026 4.026 11 N -0.312 5.312 12 C -0.071 4.071 13 C -0.152 4.152 14 C -0.117 4.117 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.138 4.138 18 C -0.148 4.148 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.231 4.231 22 C -0.226 4.226 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.175 0.825 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.603 5.439 14.773 18.440 hybrid contribution -0.227 0.205 0.263 0.404 sum 9.375 5.644 15.037 18.597 Atomic orbital electron populations 1.69931 1.06772 1.27203 1.50075 1.25015 0.94504 0.99505 0.93130 0.87004 0.84138 0.81885 0.76949 1.22622 1.23325 1.12849 1.20253 0.86615 0.94270 1.52194 0.91030 1.19378 0.94697 0.98880 0.86239 1.21444 0.96317 0.91020 0.93852 1.60591 1.10226 1.48833 1.11525 1.21935 0.98564 0.96353 0.90239 1.21574 0.99204 1.00626 0.93815 1.20603 0.99188 0.97076 0.94830 1.19975 0.96455 0.94778 0.96240 1.21093 1.00467 0.92728 0.99299 1.21138 0.97069 0.99291 0.96277 1.21115 0.98101 0.96277 0.99335 1.21141 0.99837 0.93383 0.99392 1.21089 0.96763 0.99698 0.96062 1.22866 1.01568 0.92997 1.05666 1.22898 1.01112 0.94586 1.04019 0.92793 0.96065 0.93596 0.82494 0.96149 0.91953 0.90986 0.91876 0.91111 0.90984 0.86074 0.86265 0.86386 0.86242 0.86089 0.90009 0.90881 0.91299 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.08 2.31 5.13 -17.82 -0.09 2.22 16 3 Si 0.87 22.09 23.18 -169.99 -3.94 18.15 16 4 H -0.30 -7.72 7.08 56.52 0.40 -7.32 16 5 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.21 -4.91 5.17 56.52 0.29 -4.62 16 7 C -0.50 -13.74 8.73 -34.44 -0.30 -14.04 16 8 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 9 C 0.01 0.21 1.37 -155.66 -0.21 0.00 16 10 C 0.10 2.09 5.61 -3.83 -0.02 2.07 16 11 N -0.68 -13.49 3.86 -113.78 -0.44 -13.93 16 12 C 0.06 0.92 5.69 -3.82 -0.02 0.90 16 13 C -0.11 -1.64 5.41 -26.73 -0.14 -1.78 16 14 C -0.08 -0.91 5.35 -27.89 -0.15 -1.06 16 15 C -0.07 -0.89 5.13 -104.63 -0.54 -1.43 16 16 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 17 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 18 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 19 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 20 C -0.12 -1.36 9.70 -39.58 -0.38 -1.75 16 21 C -0.19 -4.26 7.06 -26.69 -0.19 -4.45 16 22 C -0.19 -3.91 9.96 -26.69 -0.27 -4.17 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 26 H 0.35 7.77 7.24 -39.29 -0.28 7.48 16 27 H 0.02 0.30 8.13 -51.93 -0.42 -0.12 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.08 1.93 6.32 -51.93 -0.33 1.60 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -30.40 328.92 -9.58 -39.98 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.04 Total: 7.97 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -3.89 Total: -30.33 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.33 Total: -40.73 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -3.94 Total: 18.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.40 -9.58 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.806 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds