Wall clock time and date at job start Mon Mar 30 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47205 * 274.25414 * 3 2 1 5 5 H 1.48496 * 109.47468 * 34.26004 * 3 2 1 6 6 H 1.48505 * 109.47075 * 154.25576 * 3 2 1 7 7 C 1.37879 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99741 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00453 * 180.29457 * 7 2 1 10 10 C 1.52995 * 115.55145 * 94.43560 * 9 7 2 11 11 N 1.46901 * 109.47336 * 304.98740 * 10 9 7 12 12 C 1.46902 * 110.99927 * 185.66354 * 11 10 9 13 13 C 1.53004 * 109.47125 * 184.29952 * 12 11 10 14 14 C 1.52991 * 109.47107 * 184.85919 * 13 12 11 15 15 C 1.50703 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.38231 * 119.99826 * 269.72001 * 15 14 13 17 17 C 1.38244 * 119.99868 * 179.76300 * 16 15 14 18 18 C 1.38231 * 119.99824 * 0.51724 * 17 16 15 19 19 C 1.38240 * 120.00146 * 359.73996 * 18 17 16 20 20 C 1.38231 * 120.00009 * 90.00026 * 15 14 13 21 21 C 1.53008 * 117.49605 * 308.77003 * 9 7 2 22 22 C 1.53000 * 117.49717 * 240.11062 * 9 7 2 23 23 H 0.97005 * 120.00308 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47349 * 64.99309 * 10 9 7 25 25 H 1.09001 * 109.47154 * 184.98948 * 10 9 7 26 26 H 1.00897 * 110.99949 * 61.71548 * 11 10 9 27 27 H 1.08997 * 109.47210 * 304.30192 * 12 11 10 28 28 H 1.09002 * 109.47251 * 64.30164 * 12 11 10 29 29 H 1.09002 * 109.46786 * 304.85835 * 13 12 11 30 30 H 1.08995 * 109.46843 * 64.85710 * 13 12 11 31 31 H 1.09002 * 109.47229 * 299.99644 * 14 13 12 32 32 H 1.08997 * 109.47646 * 59.99406 * 14 13 12 33 33 H 1.07996 * 120.00512 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.99813 * 180.23051 * 17 16 15 35 35 H 1.08004 * 120.00393 * 179.72007 * 18 17 16 36 36 H 1.08000 * 119.99986 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.00437 * 359.97438 * 20 15 14 38 38 H 1.09000 * 117.49507 * 359.97438 * 21 9 7 39 39 H 1.08997 * 117.50070 * 145.02119 * 21 9 7 40 40 H 1.09007 * 117.49514 * 214.97301 * 22 9 7 41 41 H 1.09000 * 117.50152 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4067 2.0984 -1.3962 5 1 1.4946 2.6250 0.7881 6 1 3.5888 1.4158 0.6081 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0072 10 6 4.1652 -1.3038 1.3861 11 7 3.6561 -0.2350 2.2559 12 6 4.3597 -0.2258 3.5454 13 6 3.7321 0.8269 4.4613 14 6 4.5392 0.9216 5.7576 15 6 3.9213 1.9589 6.6594 16 6 4.3355 3.2755 6.5837 17 6 3.7652 4.2280 7.4076 18 6 2.7884 3.8618 8.3145 19 6 2.3780 2.5441 8.3939 20 6 2.9445 1.5927 7.5663 21 6 4.2226 -0.3420 -1.0460 22 6 4.2231 -1.8680 -1.1677 23 1 -0.4851 0.8401 -0.0004 24 1 3.9280 -2.2731 1.8246 25 1 5.2460 -1.2058 1.2846 26 1 2.6596 -0.3206 2.3884 27 1 4.2778 -1.2079 4.0111 28 1 5.4109 0.0133 3.3841 29 1 3.7363 1.7944 3.9592 30 1 2.7057 0.5419 4.6924 31 1 4.5350 -0.0458 6.2597 32 1 5.5656 1.2065 5.5265 33 1 5.1016 3.5610 5.8780 34 1 4.0862 5.2573 7.3458 35 1 2.3460 4.6050 8.9613 36 1 1.6151 2.2579 9.1027 37 1 2.6238 0.5633 7.6284 38 1 3.6004 0.2182 -1.7439 39 1 5.1564 0.1400 -0.7567 40 1 5.1573 -2.3891 -0.9583 41 1 3.6013 -2.3116 -1.9453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:19 Heat of formation + Delta-G solvation = 23.194625 kcal Electronic energy + Delta-G solvation = -18707.034366 eV Core-core repulsion = 15972.248584 eV Total energy + Delta-G solvation = -2734.785782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18352 -39.10620 -36.90435 -34.40767 -34.16928 -31.74687 -30.98433 -28.02694 -27.00413 -24.80533 -23.44141 -23.24113 -22.55334 -21.68772 -20.63055 -18.23987 -17.63633 -16.89201 -16.70860 -16.25025 -15.98156 -15.70454 -15.36948 -14.99391 -14.61852 -14.34761 -14.20366 -14.05044 -13.71358 -13.46106 -13.07242 -12.83620 -12.62895 -12.56857 -12.26423 -12.02794 -11.92744 -11.80781 -11.56292 -11.52969 -11.31049 -10.88437 -10.56016 -10.20930 -9.80362 -9.56297 -8.93713 -8.23745 -6.32488 0.47224 0.51673 1.44714 1.53807 1.86382 2.54423 2.87917 3.12912 3.18453 3.62613 3.88269 3.95122 4.14317 4.18644 4.23504 4.29589 4.40254 4.45678 4.51699 4.54610 4.63904 4.66965 4.78171 4.80311 4.86172 4.89307 4.92240 4.94931 5.13641 5.16139 5.19732 5.28058 5.37344 5.42657 5.52950 5.59722 5.63813 5.77132 5.80033 6.15649 6.32132 6.43720 6.58918 6.79260 7.41401 8.89835 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.004489 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.392499 B = 6235.393827 C = 6660.773784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.034 3.966 3 Si 0.932 3.068 4 H -0.305 1.305 5 H -0.319 1.319 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.026 0.974 9 C -0.018 4.018 10 C 0.111 3.889 11 N -0.694 5.694 12 C 0.061 3.939 13 C -0.107 4.107 14 C -0.069 4.069 15 C -0.092 4.092 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.129 4.129 20 C -0.135 4.135 21 C -0.191 4.191 22 C -0.171 4.171 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.075 0.925 26 H 0.337 0.663 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.165 5.565 16.069 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.164 4.164 3 Si 0.759 3.241 4 H -0.233 1.233 5 H -0.248 1.248 6 H -0.097 1.097 7 C -0.527 4.527 8 H 0.044 0.956 9 C -0.019 4.019 10 C -0.018 4.018 11 N -0.325 5.325 12 C -0.068 4.068 13 C -0.145 4.145 14 C -0.107 4.107 15 C -0.092 4.092 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.228 4.228 22 C -0.209 4.209 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.093 0.907 26 H 0.155 0.845 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.448 6.120 15.814 21.036 hybrid contribution -1.159 -0.098 -0.054 1.164 sum 11.290 6.022 15.760 20.300 Atomic orbital electron populations 1.70066 1.08623 1.27801 1.52773 1.25729 0.94877 1.02689 0.93075 0.86125 0.84126 0.77566 0.76241 1.23331 1.24767 1.09707 1.20438 0.89548 0.92233 1.50530 0.95566 1.19390 0.92101 1.01658 0.88795 1.21347 0.97454 0.91159 0.91878 1.60601 1.09372 1.48728 1.13847 1.22018 0.98943 0.97214 0.88602 1.21485 0.98868 0.99292 0.94888 1.20511 0.99200 0.97663 0.93303 1.20115 0.97075 0.95210 0.96798 1.21330 1.01004 0.92870 0.99857 1.21460 0.96995 1.00207 0.96007 1.21464 0.97862 0.96713 0.99417 1.21452 1.00160 0.93565 0.99558 1.21318 0.97039 1.00417 0.96474 1.22879 1.01965 0.93734 1.04204 1.22945 1.01912 0.94175 1.01822 0.93012 0.96330 0.90692 0.84474 0.95177 0.90141 0.92531 0.93433 0.90115 0.89690 0.85221 0.84343 0.84201 0.84468 0.85493 0.92078 0.88043 0.87455 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 2 C 0.03 1.97 5.13 84.66 0.43 2.41 16 3 Si 0.93 46.19 23.18 68.60 1.59 47.78 16 4 H -0.30 -15.32 7.08 99.48 0.70 -14.62 16 5 H -0.32 -16.38 7.11 99.48 0.71 -15.68 16 6 H -0.18 -7.82 5.17 99.48 0.51 -7.31 16 7 C -0.49 -27.66 8.73 25.60 0.22 -27.44 16 8 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 9 C -0.02 -0.82 1.37 -52.93 -0.07 -0.89 16 10 C 0.11 4.19 5.61 86.30 0.48 4.67 16 11 N -0.69 -26.21 3.86 -513.89 -1.98 -28.20 16 12 C 0.06 1.75 5.69 86.30 0.49 2.24 16 13 C -0.11 -2.92 5.41 30.59 0.17 -2.76 16 14 C -0.07 -1.46 5.35 29.85 0.16 -1.30 16 15 C -0.09 -2.09 5.13 -19.87 -0.10 -2.20 16 16 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 17 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 18 C -0.14 -2.58 10.05 22.27 0.22 -2.35 16 19 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 20 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 21 C -0.19 -7.81 7.06 30.62 0.22 -7.59 16 22 C -0.17 -6.61 9.96 30.62 0.30 -6.30 16 23 H 0.26 15.80 8.31 -92.70 -0.77 15.02 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 2.42 8.08 -2.39 -0.02 2.40 16 26 H 0.34 14.69 7.24 -89.70 -0.65 14.04 16 27 H 0.03 0.82 8.13 -2.39 -0.02 0.80 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 32 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.06 2.76 6.32 -2.39 -0.02 2.75 16 39 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 41 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -66.81 328.92 3.45 -63.37 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.14 Total: 28.72 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 3.41 Total: -51.58 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.69 Total: -88.29 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.59 Total: 47.78 kcal Total: -66.81 3.45 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.560 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds