Wall clock time and date at job start Mon Mar 30 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46508 * 109.47667 * 2 1 4 4 N 1.39873 * 125.46198 * 270.28047 * 3 2 1 5 5 C 1.30238 * 110.08409 * 180.13426 * 4 3 2 6 6 C 1.50699 * 126.10466 * 179.89709 * 5 4 3 7 7 N 1.46501 * 109.47427 * 269.68646 * 6 5 4 8 8 C 1.46494 * 120.00118 * 270.00573 * 7 6 5 9 9 C 1.36933 * 119.99772 * 89.99845 * 7 6 5 10 10 H 1.08006 * 120.00188 * 22.25009 * 9 7 6 11 11 C 1.38818 * 120.00104 * 202.24769 * 9 7 6 12 12 N 1.31619 * 119.99680 * 11.30923 * 11 9 7 13 13 Si 1.86799 * 120.00237 * 191.30421 * 11 9 7 14 14 H 1.48509 * 109.46831 * 60.00220 * 13 11 9 15 15 H 1.48500 * 109.47342 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47371 * 300.00557 * 13 11 9 17 17 C 1.45927 * 107.78617 * 359.63487 * 5 4 3 18 18 C 1.39946 * 134.02926 * 180.23433 * 17 5 4 19 19 C 1.36463 * 119.63356 * 179.97438 * 18 17 5 20 20 C 1.38960 * 120.62916 * 359.97438 * 19 18 17 21 21 C 1.36585 * 120.81717 * 359.97438 * 20 19 18 22 22 C 1.37031 * 125.45701 * 89.99912 * 3 2 1 23 23 H 1.08993 * 109.47320 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46914 * 300.00375 * 1 2 3 25 25 H 1.09006 * 109.47039 * 59.99703 * 1 2 3 26 26 H 1.09004 * 109.47025 * 240.00157 * 2 1 3 27 27 H 1.08998 * 109.47327 * 120.00090 * 2 1 3 28 28 H 1.09000 * 109.47179 * 29.68828 * 6 5 4 29 29 H 1.08997 * 109.47019 * 149.68964 * 6 5 4 30 30 H 1.09000 * 109.47387 * 94.34566 * 8 7 6 31 31 H 1.09000 * 109.47112 * 214.34257 * 8 7 6 32 32 H 1.09005 * 109.47008 * 334.34246 * 8 7 6 33 33 H 0.96996 * 119.99715 * 179.97438 * 12 11 9 34 34 H 1.08003 * 120.17946 * 0.02562 * 18 17 5 35 35 H 1.08002 * 119.68332 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.59361 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.07422 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2837 2.1482 -1.1393 5 6 2.7067 3.3305 -0.7939 6 6 3.0985 4.4426 -1.7324 7 7 4.5281 4.3439 -2.0369 8 6 5.5058 5.0394 -1.1964 9 6 4.9505 3.6012 -3.1070 10 1 4.2712 3.3904 -3.9198 11 6 6.2517 3.1194 -3.1473 12 7 7.0095 3.1803 -2.0728 13 14 6.9273 2.3847 -4.7263 14 1 6.8895 3.4064 -5.8034 15 1 8.3292 1.9463 -4.5082 16 1 6.0999 1.2169 -5.1226 17 6 2.7275 3.3882 0.6641 18 6 3.0761 4.3746 1.5936 19 6 2.9816 4.1075 2.9285 20 6 2.5423 2.8662 3.3727 21 6 2.1954 1.8879 2.4849 22 6 2.2834 2.1307 1.1162 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5239 4.3590 -2.6549 29 1 2.8928 5.4042 -1.2622 30 1 5.8771 4.3580 -0.4310 31 1 6.3373 5.3809 -1.8130 32 1 5.0306 5.8970 -0.7200 33 1 7.9186 2.8433 -2.1009 34 1 3.4172 5.3423 1.2562 35 1 3.2508 4.8680 3.6465 36 1 2.4735 2.6729 4.4330 37 1 1.8551 0.9276 2.8434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089174633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:14 Heat of formation + Delta-G solvation = 111.015471 kcal Electronic energy + Delta-G solvation = -19344.597647 eV Core-core repulsion = 16510.079719 eV Total energy + Delta-G solvation = -2834.517928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69308 -36.80640 -35.73912 -33.95499 -31.47203 -30.62584 -29.36336 -28.58944 -26.32106 -25.72857 -23.22511 -22.45681 -21.53096 -20.93561 -18.98610 -16.85467 -16.52602 -16.33225 -14.90592 -14.87536 -14.68096 -14.28509 -13.86587 -13.58819 -13.34478 -13.23565 -12.87126 -12.55108 -12.10557 -11.71568 -11.51754 -11.31303 -11.24129 -11.06219 -10.81759 -10.68124 -10.60589 -10.36928 -10.05158 -9.96172 -9.75667 -9.38249 -8.53747 -8.14070 -7.35659 -6.80280 -5.71530 -3.16518 1.44143 1.94893 2.91338 3.16844 3.42352 3.45695 3.47699 4.23031 4.54099 4.77781 4.93502 5.15524 5.18522 5.30204 5.32305 5.37165 5.49509 5.57249 5.67257 5.72777 5.77943 5.88244 6.08556 6.10419 6.20876 6.25159 6.51023 6.60177 6.76791 6.78182 6.90681 7.09614 7.33734 7.40502 7.59417 7.76650 7.85206 8.38101 8.43907 9.23890 9.84444 10.32609 11.33072 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.006961 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.698719 B = 4021.314258 C = 4800.700775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.417 5.417 4 N -0.251 5.251 5 C 0.103 3.897 6 C 0.216 3.784 7 N -0.582 5.582 8 C 0.163 3.837 9 C -0.250 4.250 10 H 0.072 0.928 11 C 0.004 3.996 12 N -0.905 5.905 13 Si 0.907 3.093 14 H -0.282 1.282 15 H -0.291 1.291 16 H -0.283 1.283 17 C -0.164 4.164 18 C -0.029 4.029 19 C -0.176 4.176 20 C -0.078 4.078 21 C -0.151 4.151 22 C 0.126 3.874 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.000 1.000 33 H 0.253 0.747 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 -1.280 9.187 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 N -0.203 5.203 4 N -0.063 5.063 5 C -0.078 4.078 6 C 0.086 3.914 7 N -0.303 5.303 8 C 0.019 3.981 9 C -0.380 4.380 10 H 0.090 0.910 11 C -0.195 4.195 12 N -0.550 5.550 13 Si 0.737 3.263 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.210 1.210 17 C -0.172 4.172 18 C -0.049 4.049 19 C -0.196 4.196 20 C -0.099 4.099 21 C -0.174 4.174 22 C 0.011 3.989 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.851 -2.286 8.181 13.780 hybrid contribution 0.772 -0.446 0.095 0.897 sum -10.079 -2.732 8.275 13.324 Atomic orbital electron populations 1.22196 0.95309 1.02207 1.02903 1.21367 0.94321 0.78883 1.03535 1.48441 1.58559 1.11880 1.01470 1.76696 1.18420 1.03970 1.07215 1.25524 0.94441 0.95506 0.92330 1.19588 0.87107 0.90671 0.94020 1.44180 0.99410 1.55584 1.31135 1.20866 0.91137 0.91900 0.94228 1.19230 0.96267 1.27187 0.95354 0.91019 1.25083 0.98248 0.98993 0.97165 1.70073 1.08643 1.49780 1.26455 0.86297 0.77849 0.79183 0.82992 1.20862 1.21670 1.20954 1.19954 1.08868 0.94804 0.93591 1.20360 0.94772 0.97832 0.91945 1.20509 1.06117 0.97642 0.95321 1.20548 0.97605 0.93121 0.98633 1.19668 1.08162 1.00325 0.89203 1.18848 0.98464 0.92093 0.89487 0.91197 0.92427 0.91763 0.89248 0.90106 0.91673 0.91823 0.95255 0.93275 0.98183 0.93691 0.85895 0.86301 0.86232 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.15 0.38 -1.57 16 2 C 0.14 2.02 7.09 -4.04 -0.03 1.99 16 3 N -0.42 -7.98 3.65 -58.70 -0.21 -8.20 16 4 N -0.25 -5.61 12.40 34.84 0.43 -5.18 16 5 C 0.10 2.27 7.01 -80.19 -0.56 1.71 16 6 C 0.22 4.65 6.30 -5.19 -0.03 4.62 16 7 N -0.58 -14.87 2.91 -182.50 -0.53 -15.40 16 8 C 0.16 4.03 9.01 59.84 0.54 4.57 16 9 C -0.25 -7.03 9.67 -15.06 -0.15 -7.18 16 10 H 0.07 1.98 7.84 -52.48 -0.41 1.57 16 11 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 12 N -0.91 -26.96 10.58 55.49 0.59 -26.37 16 13 Si 0.91 22.44 29.57 -169.99 -5.03 17.41 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 C -0.16 -3.29 6.33 -105.20 -0.67 -3.96 16 18 C -0.03 -0.49 10.07 -39.58 -0.40 -0.89 16 19 C -0.18 -2.57 9.97 -39.95 -0.40 -2.97 16 20 C -0.08 -1.09 9.96 -39.91 -0.40 -1.48 16 21 C -0.15 -2.32 9.97 -39.79 -0.40 -2.72 16 22 C 0.13 2.38 6.87 -84.18 -0.58 1.80 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 29 H 0.06 1.17 7.86 -51.93 -0.41 0.77 16 30 H 0.03 0.80 7.41 -51.93 -0.38 0.42 16 31 H 0.05 1.29 7.19 -51.93 -0.37 0.92 16 32 H 0.00 -0.01 7.84 -51.93 -0.41 -0.41 16 33 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -32.96 315.47 -8.12 -41.07 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.34 Total: -2.04 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.77 Total: -6.06 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.27 Total: -55.14 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.96 -8.12 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089174633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.088 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds