Wall clock time and date at job start Mon Mar 30 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46508 * 109.47667 * 2 1 4 4 N 1.39873 * 125.46198 * 270.28047 * 3 2 1 5 5 C 1.30238 * 110.08409 * 180.13426 * 4 3 2 6 6 C 1.50699 * 126.10466 * 179.89709 * 5 4 3 7 7 N 1.46501 * 109.47427 * 269.68646 * 6 5 4 8 8 C 1.46494 * 120.00118 * 270.00573 * 7 6 5 9 9 C 1.36933 * 119.99772 * 89.99845 * 7 6 5 10 10 H 1.08006 * 120.00188 * 22.25009 * 9 7 6 11 11 C 1.38818 * 120.00104 * 202.24769 * 9 7 6 12 12 N 1.31619 * 119.99680 * 11.30923 * 11 9 7 13 13 Si 1.86799 * 120.00237 * 191.30421 * 11 9 7 14 14 H 1.48509 * 109.46831 * 60.00220 * 13 11 9 15 15 H 1.48500 * 109.47342 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47371 * 300.00557 * 13 11 9 17 17 C 1.45927 * 107.78617 * 359.63487 * 5 4 3 18 18 C 1.39946 * 134.02926 * 180.23433 * 17 5 4 19 19 C 1.36463 * 119.63356 * 179.97438 * 18 17 5 20 20 C 1.38960 * 120.62916 * 359.97438 * 19 18 17 21 21 C 1.36585 * 120.81717 * 359.97438 * 20 19 18 22 22 C 1.37031 * 125.45701 * 89.99912 * 3 2 1 23 23 H 1.08993 * 109.47320 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46914 * 300.00375 * 1 2 3 25 25 H 1.09006 * 109.47039 * 59.99703 * 1 2 3 26 26 H 1.09004 * 109.47025 * 240.00157 * 2 1 3 27 27 H 1.08998 * 109.47327 * 120.00090 * 2 1 3 28 28 H 1.09000 * 109.47179 * 29.68828 * 6 5 4 29 29 H 1.08997 * 109.47019 * 149.68964 * 6 5 4 30 30 H 1.09000 * 109.47387 * 94.34566 * 8 7 6 31 31 H 1.09000 * 109.47112 * 214.34257 * 8 7 6 32 32 H 1.09005 * 109.47008 * 334.34246 * 8 7 6 33 33 H 0.96996 * 119.99715 * 179.97438 * 12 11 9 34 34 H 1.08003 * 120.17946 * 0.02562 * 18 17 5 35 35 H 1.08002 * 119.68332 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.59361 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.07422 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2837 2.1482 -1.1393 5 6 2.7067 3.3305 -0.7939 6 6 3.0985 4.4426 -1.7324 7 7 4.5281 4.3439 -2.0369 8 6 5.5058 5.0394 -1.1964 9 6 4.9505 3.6012 -3.1070 10 1 4.2712 3.3904 -3.9198 11 6 6.2517 3.1194 -3.1473 12 7 7.0095 3.1803 -2.0728 13 14 6.9273 2.3847 -4.7263 14 1 6.8895 3.4064 -5.8034 15 1 8.3292 1.9463 -4.5082 16 1 6.0999 1.2169 -5.1226 17 6 2.7275 3.3882 0.6641 18 6 3.0761 4.3746 1.5936 19 6 2.9816 4.1075 2.9285 20 6 2.5423 2.8662 3.3727 21 6 2.1954 1.8879 2.4849 22 6 2.2834 2.1307 1.1162 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5239 4.3590 -2.6549 29 1 2.8928 5.4042 -1.2622 30 1 5.8771 4.3580 -0.4310 31 1 6.3373 5.3809 -1.8130 32 1 5.0306 5.8970 -0.7200 33 1 7.9186 2.8433 -2.1009 34 1 3.4172 5.3423 1.2562 35 1 3.2508 4.8680 3.6465 36 1 2.4735 2.6729 4.4330 37 1 1.8551 0.9276 2.8434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089174633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:14 Heat of formation + Delta-G solvation = 91.508361 kcal Electronic energy + Delta-G solvation = -19345.443538 eV Core-core repulsion = 16510.079719 eV Total energy + Delta-G solvation = -2835.363820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06815 -38.08476 -37.57127 -35.36063 -33.33289 -31.97003 -30.71360 -30.00649 -28.04559 -27.69581 -24.47533 -23.86577 -23.19982 -22.31515 -20.45295 -18.80199 -17.89435 -17.71955 -16.82041 -16.23184 -16.01308 -15.48394 -15.39176 -15.33413 -14.99661 -14.53680 -14.49090 -13.70502 -13.52502 -13.14006 -13.06163 -12.84316 -12.68538 -12.65925 -12.46238 -12.33467 -12.11896 -12.05685 -11.94307 -11.80100 -11.36121 -10.76575 -10.66406 -9.48999 -8.91073 -8.63422 -7.85592 -5.33523 0.15597 0.70067 1.42196 1.44303 1.51024 1.62418 1.68113 2.49732 2.97043 3.29091 3.57996 3.70601 3.81586 3.89207 4.11708 4.13069 4.20938 4.32251 4.40802 4.57121 4.64104 4.75601 4.81560 4.81959 4.87472 4.92146 5.06955 5.14952 5.24558 5.34069 5.54449 5.61010 5.68163 5.71584 5.75873 6.07758 6.29216 6.33056 6.91093 7.12855 7.81156 8.24013 9.17234 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.006961 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.698719 B = 4021.314258 C = 4800.700775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 N -0.420 5.420 4 N -0.290 5.290 5 C 0.082 3.918 6 C 0.218 3.782 7 N -0.598 5.598 8 C 0.181 3.819 9 C -0.257 4.257 10 H 0.068 0.932 11 C -0.051 4.051 12 N -0.936 5.936 13 Si 0.968 3.032 14 H -0.271 1.271 15 H -0.293 1.293 16 H -0.284 1.284 17 C -0.199 4.199 18 C -0.050 4.050 19 C -0.166 4.166 20 C -0.069 4.069 21 C -0.154 4.154 22 C 0.105 3.895 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.093 0.907 30 H -0.004 1.004 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 -1.699 11.364 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.008 3.992 3 N -0.209 5.209 4 N -0.103 5.103 5 C -0.099 4.099 6 C 0.089 3.911 7 N -0.320 5.320 8 C 0.037 3.963 9 C -0.388 4.388 10 H 0.086 0.914 11 C -0.246 4.246 12 N -0.583 5.583 13 Si 0.796 3.204 14 H -0.196 1.196 15 H -0.219 1.219 16 H -0.210 1.210 17 C -0.207 4.207 18 C -0.071 4.071 19 C -0.186 4.186 20 C -0.089 4.089 21 C -0.176 4.176 22 C -0.010 4.010 23 H 0.121 0.879 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.014 0.986 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.046 -2.698 10.356 16.113 hybrid contribution 0.981 -0.328 -0.421 1.116 sum -11.065 -3.026 9.936 15.176 Atomic orbital electron populations 1.22100 0.93142 1.04073 1.01983 1.21769 0.96117 0.76948 1.04351 1.48698 1.58437 1.12911 1.00816 1.76508 1.19314 1.04768 1.09741 1.25347 0.95537 0.95286 0.93704 1.19623 0.84856 0.92185 0.94419 1.44273 1.00986 1.55651 1.31089 1.20573 0.90739 0.92223 0.92792 1.19475 0.96395 1.26639 0.96282 0.91418 1.25806 0.98671 1.00107 1.00043 1.70251 1.08504 1.51372 1.28146 0.85333 0.76755 0.78459 0.79840 1.19640 1.21865 1.20982 1.20219 1.10857 0.96653 0.92965 1.20605 0.95767 0.97792 0.92893 1.20988 1.04013 0.98859 0.94730 1.21113 0.95106 0.92037 1.00640 1.20123 1.07643 1.02184 0.87666 1.19337 0.99160 0.91770 0.90766 0.87851 0.92129 0.93790 0.90136 0.87546 0.91946 0.88924 0.98555 0.95817 0.94233 0.94380 0.85337 0.82912 0.81827 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.13 3.55 7.09 86.37 0.61 4.16 16 3 N -0.42 -16.09 3.65 -339.64 -1.24 -17.33 16 4 N -0.29 -13.37 12.40 -43.70 -0.54 -13.91 16 5 C 0.08 3.67 7.01 44.79 0.31 3.98 16 6 C 0.22 9.54 6.30 85.63 0.54 10.08 16 7 N -0.60 -31.24 2.91 -731.31 -2.13 -33.36 16 8 C 0.18 9.15 9.01 127.77 1.15 10.31 16 9 C -0.26 -14.83 9.67 84.04 0.81 -14.02 16 10 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 11 C -0.05 -3.00 5.13 84.86 0.44 -2.56 16 12 N -0.94 -57.55 10.58 21.65 0.23 -57.32 16 13 Si 0.97 47.18 29.57 68.60 2.03 49.21 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 17 C -0.20 -7.96 6.33 -20.24 -0.13 -8.09 16 18 C -0.05 -1.65 10.07 22.27 0.22 -1.43 16 19 C -0.17 -4.27 9.97 22.03 0.22 -4.05 16 20 C -0.07 -1.60 9.96 22.06 0.22 -1.38 16 21 C -0.15 -4.24 9.97 22.13 0.22 -4.02 16 22 C 0.10 3.84 6.87 39.22 0.27 4.10 16 23 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.69 8.03 -2.39 -0.02 2.67 16 29 H 0.09 3.40 7.86 -2.39 -0.02 3.38 16 30 H 0.00 -0.22 7.41 -2.39 -0.02 -0.24 16 31 H 0.02 1.27 7.19 -2.39 -0.02 1.25 16 32 H 0.04 1.63 7.84 -2.38 -0.02 1.61 16 33 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -74.50 315.47 5.02 -69.48 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.04 Total: 8.76 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.63 Total: -5.53 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -3.68 Total: -121.92 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -74.50 5.02 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089174633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.984 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds