Wall clock time and date at job start Mon Mar 30 2020 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99663 * 2 1 4 4 H 1.48503 * 109.46812 * 263.96414 * 3 2 1 5 5 H 1.48500 * 109.47554 * 23.96103 * 3 2 1 6 6 H 1.48499 * 109.47183 * 143.96426 * 3 2 1 7 7 C 1.38801 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00590 * 359.67254 * 7 2 1 9 9 N 1.36939 * 120.00073 * 179.67320 * 7 2 1 10 10 C 1.46930 * 120.63058 * 52.57472 * 9 7 2 11 11 C 1.53186 * 108.77541 * 126.39429 * 10 9 7 12 12 C 1.53045 * 109.31142 * 54.63961 * 11 10 9 13 13 C 1.53036 * 109.53742 * 298.63082 * 12 11 10 14 14 C 1.46925 * 120.63281 * 232.58234 * 9 7 2 15 15 H 1.09005 * 109.70493 * 113.74621 * 14 9 7 16 16 C 1.52994 * 109.58490 * 353.39048 * 14 9 7 17 17 C 1.53009 * 109.46819 * 172.88927 * 16 14 9 18 18 C 1.50699 * 109.46965 * 176.20700 * 17 16 14 19 19 C 1.38240 * 120.00283 * 269.91111 * 18 17 16 20 20 C 1.38231 * 120.00298 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99900 * 0.09380 * 20 19 18 22 22 C 1.38235 * 120.00145 * 359.97438 * 21 20 19 23 23 C 1.38232 * 119.99955 * 89.99863 * 18 17 16 24 24 H 0.97001 * 119.99823 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58088 * 6.60734 * 10 9 7 26 26 H 1.09002 * 109.70597 * 246.25736 * 10 9 7 27 27 H 1.09002 * 109.50066 * 294.68718 * 11 10 9 28 28 H 1.09001 * 109.52501 * 174.60734 * 11 10 9 29 29 H 1.09001 * 109.45538 * 178.61126 * 12 11 10 30 30 H 1.08991 * 109.46106 * 58.65451 * 12 11 10 31 31 H 1.09005 * 109.50223 * 301.41631 * 13 12 11 32 32 H 1.09001 * 109.49942 * 181.31669 * 13 12 11 33 33 H 1.08994 * 109.47404 * 52.89272 * 16 14 9 34 34 H 1.08994 * 109.47240 * 292.88591 * 16 14 9 35 35 H 1.08992 * 109.47010 * 56.21068 * 17 16 14 36 36 H 1.08994 * 109.47145 * 296.20586 * 17 16 14 37 37 H 1.08001 * 119.99634 * 0.06835 * 19 18 17 38 38 H 1.08001 * 120.00180 * 180.36621 * 20 19 18 39 39 H 1.08005 * 120.00143 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00317 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00330 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6251 1.9728 -1.3924 5 1 1.3897 2.6862 0.5686 6 1 3.4781 1.4804 0.8236 7 6 2.0102 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0063 9 7 3.3796 -1.2021 -0.0062 10 6 4.1332 -0.4305 0.9916 11 6 5.1283 -1.3640 1.6879 12 6 6.0007 -2.0505 0.6344 13 6 5.1186 -2.8899 -0.2926 14 6 4.1233 -1.9736 -1.0114 15 1 4.6629 -1.2940 -1.6711 16 6 3.1484 -2.8195 -1.8330 17 6 3.8988 -3.4836 -2.9893 18 6 2.9597 -4.3897 -3.7430 19 6 2.8317 -5.7152 -3.3720 20 6 1.9699 -6.5463 -4.0630 21 6 1.2375 -6.0523 -5.1262 22 6 1.3665 -4.7272 -5.4981 23 6 2.2276 -3.8959 -4.8065 24 1 -0.4850 0.8401 -0.0004 25 1 3.4452 -0.0150 1.7278 26 1 4.6736 0.3781 0.4993 27 1 4.5835 -2.1178 2.2565 28 1 5.7597 -0.7856 2.3624 29 1 6.7261 -2.6967 1.1288 30 1 6.5263 -1.2954 0.0501 31 1 4.5738 -3.6293 0.2945 32 1 5.7430 -3.3970 -1.0282 33 1 2.3595 -2.1813 -2.2308 34 1 2.7084 -3.5874 -1.1968 35 1 4.7296 -4.0685 -2.5950 36 1 4.2816 -2.7164 -3.6622 37 1 3.4039 -6.1011 -2.5413 38 1 1.8654 -7.5803 -3.7695 39 1 0.5644 -6.7017 -5.6664 40 1 0.7946 -4.3414 -6.3291 41 1 2.3283 -2.8606 -5.0970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090010506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:55 Heat of formation + Delta-G solvation = 30.332969 kcal Electronic energy + Delta-G solvation = -19529.190792 eV Core-core repulsion = 16794.714551 eV Total energy + Delta-G solvation = -2734.476240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.14350 -37.96630 -34.10651 -33.00298 -31.06529 -30.68826 -30.63947 -27.70600 -25.06022 -23.80063 -22.40323 -22.27520 -20.92076 -20.06055 -19.24906 -16.61032 -16.37752 -15.37595 -15.07959 -14.91439 -14.25483 -13.79658 -13.61680 -13.57013 -13.20441 -12.98390 -12.93179 -12.60080 -12.36443 -12.06524 -11.64796 -11.38656 -11.18790 -10.91051 -10.81834 -10.71107 -10.47451 -10.35158 -10.01709 -9.95440 -9.73735 -9.37544 -9.15346 -8.71616 -8.41609 -8.35282 -6.45258 -5.90325 -3.56911 1.58513 1.60495 3.39761 3.48640 3.51049 3.99703 4.58905 4.97405 5.04963 5.11019 5.19291 5.30790 5.34264 5.49010 5.53486 5.60526 5.61835 5.72451 5.82412 5.92078 6.00455 6.05735 6.20517 6.23696 6.25881 6.29601 6.41720 6.43562 6.54693 6.57819 6.63930 6.68666 6.71372 6.73835 6.87270 6.88836 6.99060 7.21054 7.21765 7.29361 8.21840 8.57113 9.06534 9.75340 10.27329 11.22230 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.006283 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.732557 B = 4455.128098 C = 5442.232862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.042 3.958 3 Si 0.862 3.138 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.237 1.237 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.136 3.864 11 C -0.138 4.138 12 C -0.110 4.110 13 C -0.131 4.131 14 C 0.177 3.823 15 H 0.026 0.974 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.066 4.066 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.119 4.119 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.666 -8.743 -6.511 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.159 4.159 3 Si 0.691 3.309 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.162 1.162 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.330 5.330 10 C 0.012 3.988 11 C -0.177 4.177 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.071 3.929 15 H 0.043 0.957 16 C -0.134 4.134 17 C -0.123 4.123 18 C -0.066 4.066 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.134 4.134 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.484 -8.627 -6.499 13.734 hybrid contribution 0.204 0.967 0.034 0.989 sum 8.688 -7.660 -6.465 13.264 Atomic orbital electron populations 1.69794 1.06099 1.26672 1.52580 1.25816 0.95047 0.98503 0.96535 0.87490 0.80997 0.83425 0.79015 1.21295 1.22975 1.16163 1.18601 0.79528 0.93147 1.48178 0.90930 1.44293 1.02660 1.56151 1.29915 1.21652 0.93275 0.92251 0.91670 1.22070 0.98196 0.99874 0.97564 1.21392 0.97286 0.98611 0.97493 1.22091 0.97974 0.98584 0.98390 1.20514 0.91387 0.91444 0.89564 0.95658 1.21565 0.98311 0.98826 0.94658 1.20774 0.96651 0.97399 0.97436 1.20022 0.97235 0.94211 0.95132 1.21044 0.99407 0.93529 0.99726 1.21082 0.97068 0.99535 0.96257 1.21054 1.00224 0.95795 0.98126 1.21109 0.98678 0.93976 0.99974 1.21103 0.96713 0.99691 0.95899 0.92827 0.91741 0.95900 0.92224 0.93433 0.93584 0.92972 0.92237 0.93023 0.90143 0.92086 0.91378 0.91486 0.86297 0.86526 0.86635 0.86443 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.97 55.49 0.78 -27.16 16 2 C 0.04 1.21 5.46 -17.43 -0.10 1.11 16 3 Si 0.86 21.56 26.33 -169.99 -4.48 17.09 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.24 -5.40 3.91 56.52 0.22 -5.18 16 7 C -0.27 -7.30 8.15 -15.06 -0.12 -7.42 16 8 H 0.07 2.20 7.50 -52.49 -0.39 1.80 16 9 N -0.60 -14.15 2.45 -164.78 -0.40 -14.55 16 10 C 0.14 2.93 3.91 -3.71 -0.01 2.92 16 11 C -0.14 -2.45 6.08 -26.61 -0.16 -2.61 16 12 C -0.11 -1.76 5.88 -26.69 -0.16 -1.91 16 13 C -0.13 -2.19 5.04 -26.61 -0.13 -2.32 16 14 C 0.18 3.48 2.94 -67.60 -0.20 3.29 16 15 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 16 C -0.10 -1.82 3.65 -26.73 -0.10 -1.92 16 17 C -0.08 -1.28 5.22 -27.88 -0.15 -1.42 16 18 C -0.07 -0.99 5.13 -104.62 -0.54 -1.53 16 19 C -0.12 -1.66 9.70 -39.58 -0.38 -2.05 16 20 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 21 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 22 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.70 9.70 -39.58 -0.38 -2.09 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.06 1.48 6.17 -51.93 -0.32 1.16 16 26 H 0.02 0.50 6.56 -51.93 -0.34 0.16 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.74 6.86 -51.93 -0.36 0.38 16 33 H 0.08 1.80 7.33 -51.93 -0.38 1.41 16 34 H 0.06 1.23 7.88 -51.93 -0.41 0.83 16 35 H 0.07 0.92 6.58 -51.93 -0.34 0.58 16 36 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 316.29 15.07 4.77 4.77 Total: -1.00 -30.14 316.29 -9.89 -40.03 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.93 Total: 1.79 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -3.63 Total: -21.97 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.37 Total: -41.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.48 Total: 17.09 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.14 -9.89 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090010506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.366 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds