Wall clock time and date at job start Mon Mar 30 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99663 * 2 1 4 4 H 1.48503 * 109.46812 * 263.96414 * 3 2 1 5 5 H 1.48500 * 109.47554 * 23.96103 * 3 2 1 6 6 H 1.48499 * 109.47183 * 143.96426 * 3 2 1 7 7 C 1.38801 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00590 * 359.67254 * 7 2 1 9 9 N 1.36939 * 120.00073 * 179.67320 * 7 2 1 10 10 C 1.46930 * 120.63058 * 52.57472 * 9 7 2 11 11 C 1.53186 * 108.77541 * 126.39429 * 10 9 7 12 12 C 1.53045 * 109.31142 * 54.63961 * 11 10 9 13 13 C 1.53036 * 109.53742 * 298.63082 * 12 11 10 14 14 C 1.46925 * 120.63281 * 232.58234 * 9 7 2 15 15 H 1.09005 * 109.70493 * 113.74621 * 14 9 7 16 16 C 1.52994 * 109.58490 * 353.39048 * 14 9 7 17 17 C 1.53009 * 109.46819 * 172.88927 * 16 14 9 18 18 C 1.50699 * 109.46965 * 176.20700 * 17 16 14 19 19 C 1.38240 * 120.00283 * 269.91111 * 18 17 16 20 20 C 1.38231 * 120.00298 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99900 * 0.09380 * 20 19 18 22 22 C 1.38235 * 120.00145 * 359.97438 * 21 20 19 23 23 C 1.38232 * 119.99955 * 89.99863 * 18 17 16 24 24 H 0.97001 * 119.99823 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58088 * 6.60734 * 10 9 7 26 26 H 1.09002 * 109.70597 * 246.25736 * 10 9 7 27 27 H 1.09002 * 109.50066 * 294.68718 * 11 10 9 28 28 H 1.09001 * 109.52501 * 174.60734 * 11 10 9 29 29 H 1.09001 * 109.45538 * 178.61126 * 12 11 10 30 30 H 1.08991 * 109.46106 * 58.65451 * 12 11 10 31 31 H 1.09005 * 109.50223 * 301.41631 * 13 12 11 32 32 H 1.09001 * 109.49942 * 181.31669 * 13 12 11 33 33 H 1.08994 * 109.47404 * 52.89272 * 16 14 9 34 34 H 1.08994 * 109.47240 * 292.88591 * 16 14 9 35 35 H 1.08992 * 109.47010 * 56.21068 * 17 16 14 36 36 H 1.08994 * 109.47145 * 296.20586 * 17 16 14 37 37 H 1.08001 * 119.99634 * 0.06835 * 19 18 17 38 38 H 1.08001 * 120.00180 * 180.36621 * 20 19 18 39 39 H 1.08005 * 120.00143 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00317 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00330 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6251 1.9728 -1.3924 5 1 1.3897 2.6862 0.5686 6 1 3.4781 1.4804 0.8236 7 6 2.0102 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0063 9 7 3.3796 -1.2021 -0.0062 10 6 4.1332 -0.4305 0.9916 11 6 5.1283 -1.3640 1.6879 12 6 6.0007 -2.0505 0.6344 13 6 5.1186 -2.8899 -0.2926 14 6 4.1233 -1.9736 -1.0114 15 1 4.6629 -1.2940 -1.6711 16 6 3.1484 -2.8195 -1.8330 17 6 3.8988 -3.4836 -2.9893 18 6 2.9597 -4.3897 -3.7430 19 6 2.8317 -5.7152 -3.3720 20 6 1.9699 -6.5463 -4.0630 21 6 1.2375 -6.0523 -5.1262 22 6 1.3665 -4.7272 -5.4981 23 6 2.2276 -3.8959 -4.8065 24 1 -0.4850 0.8401 -0.0004 25 1 3.4452 -0.0150 1.7278 26 1 4.6736 0.3781 0.4993 27 1 4.5835 -2.1178 2.2565 28 1 5.7597 -0.7856 2.3624 29 1 6.7261 -2.6967 1.1288 30 1 6.5263 -1.2954 0.0501 31 1 4.5738 -3.6293 0.2945 32 1 5.7430 -3.3970 -1.0282 33 1 2.3595 -2.1813 -2.2308 34 1 2.7084 -3.5874 -1.1968 35 1 4.7296 -4.0685 -2.5950 36 1 4.2816 -2.7164 -3.6622 37 1 3.4039 -6.1011 -2.5413 38 1 1.8654 -7.5803 -3.7695 39 1 0.5644 -6.7017 -5.6664 40 1 0.7946 -4.3414 -6.3291 41 1 2.3283 -2.8606 -5.0970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090010506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:54 Heat of formation + Delta-G solvation = 14.802926 kcal Electronic energy + Delta-G solvation = -19529.864225 eV Core-core repulsion = 16794.714551 eV Total energy + Delta-G solvation = -2735.149673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29650 -39.47361 -35.46132 -34.90353 -32.74529 -32.20856 -31.71650 -29.05556 -26.91478 -25.20454 -24.00719 -23.40219 -22.22199 -21.41233 -20.92274 -18.38602 -17.66065 -17.17392 -16.28669 -16.19650 -15.75014 -15.37181 -15.09539 -15.06879 -14.65047 -14.33557 -14.21959 -14.14034 -13.75777 -13.50011 -13.12873 -13.01139 -12.80056 -12.53572 -12.26577 -12.06259 -11.91020 -11.71763 -11.65507 -11.48074 -11.25893 -11.16731 -10.82337 -10.43998 -9.76941 -9.50819 -8.41477 -8.10352 -5.77347 0.51565 0.55039 1.38504 1.42078 1.49441 2.47671 2.91758 3.17129 3.36949 3.90312 3.98805 4.11956 4.17071 4.20700 4.25446 4.33180 4.33718 4.50091 4.57358 4.66663 4.71089 4.73458 4.78523 4.86978 4.93613 4.99967 5.12292 5.16359 5.21567 5.25240 5.25642 5.33347 5.35513 5.46907 5.61030 5.63028 5.65765 5.71728 5.83397 6.04962 6.19448 6.30960 7.10864 7.65224 8.18346 9.03238 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.006283 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.732557 B = 4455.128098 C = 5442.232862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.019 4.019 3 Si 0.917 3.083 4 H -0.292 1.292 5 H -0.311 1.311 6 H -0.197 1.197 7 C -0.243 4.243 8 H 0.029 0.971 9 N -0.619 5.619 10 C 0.127 3.873 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.123 4.123 14 C 0.168 3.832 15 H 0.032 0.968 16 C -0.082 4.082 17 C -0.071 4.071 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.139 4.139 24 H 0.259 0.741 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.703 -9.643 -6.744 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.215 4.215 3 Si 0.744 3.256 4 H -0.219 1.219 5 H -0.239 1.239 6 H -0.119 1.119 7 C -0.373 4.373 8 H 0.047 0.953 9 N -0.345 5.345 10 C 0.003 3.997 11 C -0.170 4.170 12 C -0.145 4.145 13 C -0.162 4.162 14 C 0.064 3.936 15 H 0.050 0.950 16 C -0.120 4.120 17 C -0.109 4.109 18 C -0.089 4.089 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.157 4.157 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.574 -9.549 -6.725 16.443 hybrid contribution -0.796 1.112 0.076 1.370 sum 10.778 -8.437 -6.649 15.217 Atomic orbital electron populations 1.69950 1.07961 1.27236 1.55457 1.26538 0.95675 1.02135 0.97145 0.86635 0.81208 0.78674 0.79083 1.21948 1.23893 1.11944 1.18346 0.81682 0.91384 1.45904 0.95345 1.44458 1.01387 1.56957 1.31733 1.21705 0.93630 0.93261 0.91093 1.21974 0.97747 0.99145 0.98177 1.21409 0.97143 0.99067 0.96873 1.21996 0.97457 0.97774 0.98976 1.20765 0.91803 0.91800 0.89275 0.95003 1.21349 0.97515 0.97522 0.95647 1.20633 0.96723 0.97620 0.95876 1.20130 0.98083 0.94951 0.95784 1.21296 0.99996 0.93322 1.00272 1.21460 0.96296 1.00730 0.95906 1.21454 1.00125 0.95809 0.98000 1.21418 0.98438 0.94435 1.00401 1.21288 0.97674 1.00041 0.96656 0.93186 0.93766 0.94983 0.93435 0.90552 0.90502 0.91857 0.93507 0.89765 0.94763 0.94300 0.89109 0.90805 0.85107 0.83904 0.83858 0.84580 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.03 13.97 21.65 0.30 -61.73 16 2 C -0.02 -1.14 5.46 84.86 0.46 -0.67 16 3 Si 0.92 45.18 26.33 68.60 1.81 46.98 16 4 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.20 -8.39 3.91 99.48 0.39 -8.00 16 7 C -0.24 -13.92 8.15 84.03 0.68 -13.24 16 8 H 0.03 1.87 7.50 -2.91 -0.02 1.85 16 9 N -0.62 -28.96 2.45 -675.23 -1.66 -30.61 16 10 C 0.13 5.23 3.91 86.36 0.34 5.57 16 11 C -0.13 -4.24 6.08 30.67 0.19 -4.05 16 12 C -0.11 -2.94 5.88 30.62 0.18 -2.76 16 13 C -0.12 -3.74 5.04 30.67 0.15 -3.59 16 14 C 0.17 6.48 2.94 44.97 0.13 6.61 16 15 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 16 C -0.08 -3.22 3.65 30.60 0.11 -3.11 16 17 C -0.07 -2.09 5.22 29.85 0.16 -1.94 16 18 C -0.09 -2.68 5.13 -19.87 -0.10 -2.78 16 19 C -0.13 -3.53 9.70 22.27 0.22 -3.31 16 20 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 21 C -0.14 -3.17 10.05 22.27 0.22 -2.95 16 22 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 23 C -0.14 -4.12 9.70 22.27 0.22 -3.90 16 24 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 25 H 0.04 1.97 6.17 -2.39 -0.01 1.95 16 26 H 0.03 1.28 6.56 -2.39 -0.02 1.26 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.08 2.04 6.86 -2.39 -0.02 2.02 16 33 H 0.03 1.62 7.33 -2.39 -0.02 1.60 16 34 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 35 H 0.09 2.24 6.58 -2.39 -0.02 2.23 16 36 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 37 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -68.99 316.29 4.52 -64.47 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.66 Total: 16.90 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.41 Total: -36.01 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -1.35 Total: -92.34 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.81 Total: 46.98 kcal Total: -68.99 4.52 -64.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090010506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.273 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds