Wall clock time and date at job start Mon Mar 30 2020 06:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47586 * 2 1 4 4 H 1.09006 * 109.47057 * 305.65354 * 3 2 1 5 5 C 1.50699 * 109.47321 * 185.65776 * 3 2 1 6 6 H 1.08005 * 119.99315 * 245.39178 * 5 3 2 7 7 C 1.37877 * 120.00458 * 65.38881 * 5 3 2 8 8 N 1.31511 * 120.00049 * 197.20225 * 7 5 3 9 9 Si 1.86799 * 119.99770 * 17.20023 * 7 5 3 10 10 H 1.48504 * 109.46828 * 86.80713 * 9 7 5 11 11 H 1.48498 * 109.46863 * 206.80828 * 9 7 5 12 12 H 1.48501 * 109.47139 * 326.80737 * 9 7 5 13 13 N 1.46902 * 109.47238 * 65.64892 * 3 2 1 14 14 C 1.46900 * 111.00037 * 251.31080 * 13 3 2 15 15 C 1.50705 * 109.46801 * 183.07495 * 14 13 3 16 16 C 1.34229 * 126.56116 * 259.69095 * 15 14 13 17 17 N 1.36924 * 109.90966 * 179.83358 * 16 15 14 18 18 H 0.96997 * 124.98296 * 180.18172 * 17 16 15 19 19 C 1.37424 * 110.02463 * 0.44452 * 17 16 15 20 20 N 1.32648 * 133.19244 * 179.74043 * 19 17 16 21 21 C 1.31587 * 121.67265 * 179.97438 * 20 19 17 22 22 C 1.38663 * 121.58162 * 359.97438 * 21 20 19 23 23 C 1.38202 * 119.41239 * 359.97438 * 22 21 20 24 24 C 1.39690 * 118.03809 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.46936 * 305.51318 * 1 2 3 26 26 H 1.09000 * 109.47442 * 185.51179 * 1 2 3 27 27 H 1.09002 * 109.46814 * 65.51205 * 1 2 3 28 28 H 1.09007 * 109.47079 * 119.99933 * 2 1 3 29 29 H 1.08997 * 109.47206 * 239.99277 * 2 1 3 30 30 H 0.96994 * 120.00184 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99693 * 127.35876 * 13 3 2 32 32 H 1.08998 * 109.47414 * 303.07039 * 14 13 3 33 33 H 1.08996 * 109.47118 * 63.07574 * 14 13 3 34 34 H 1.07995 * 125.04932 * 359.97080 * 16 15 14 35 35 H 1.08002 * 119.20969 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.29354 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.97851 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4447 -0.1401 6 1 4.1578 1.8068 0.6689 7 6 4.1253 0.9844 -1.3007 8 7 5.4012 0.6658 -1.3127 9 14 3.1053 0.8133 -2.8563 10 1 3.0966 2.1061 -3.5871 11 1 3.6945 -0.2403 -3.7211 12 1 1.7141 0.4382 -2.4972 13 7 1.6649 2.0945 1.2618 14 6 0.6098 3.0933 1.0448 15 6 0.3052 3.7925 2.3446 16 6 -0.7265 3.5404 3.1655 17 7 -0.6729 4.3733 4.2510 18 1 -1.3107 4.3761 4.9819 19 6 0.4136 5.2087 4.1500 20 7 0.8905 6.1754 4.9231 21 6 1.9757 6.8461 4.6004 22 6 2.6768 6.5758 3.4350 23 6 2.2291 5.5786 2.5894 24 6 1.0752 4.8795 2.9516 25 1 -0.3633 0.5970 0.8365 26 1 -0.3634 -1.0229 0.0987 27 1 -0.3633 0.4260 -0.9353 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 5.8126 0.3417 -2.1291 31 1 2.4695 2.5094 1.7074 32 1 0.9467 3.8239 0.3095 33 1 -0.2897 2.5980 0.6792 34 1 -1.4848 2.7904 2.9963 35 1 2.3292 7.6252 5.2595 36 1 3.5649 7.1396 3.1903 37 1 2.7553 5.3472 1.6751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091018156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:01 Heat of formation + Delta-G solvation = 68.472538 kcal Electronic energy + Delta-G solvation = -18894.795958 eV Core-core repulsion = 16058.433230 eV Total energy + Delta-G solvation = -2836.362728 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39028 -37.75571 -36.47703 -33.39330 -32.20258 -31.45134 -29.80421 -29.24905 -27.16464 -24.10284 -23.52876 -22.45359 -22.29803 -19.68870 -19.20246 -18.12340 -16.83055 -16.62458 -15.87616 -15.24034 -14.95510 -14.53240 -13.98952 -13.74216 -13.24001 -13.16440 -12.90209 -12.76297 -12.39347 -12.18376 -12.02067 -11.83676 -11.52589 -11.15225 -10.79631 -10.75689 -10.29554 -10.16871 -9.78893 -9.47111 -9.26079 -9.17430 -8.41175 -8.34276 -7.85086 -7.34999 -6.14671 -4.09091 1.12704 1.49365 2.77991 2.87798 3.26974 3.36467 3.39537 4.01708 4.39948 4.59064 4.83175 4.88749 5.09793 5.16203 5.29022 5.39697 5.52768 5.63841 5.78718 5.91629 6.08247 6.11439 6.15704 6.24792 6.31188 6.42941 6.57330 6.67602 6.72688 6.80875 7.07607 7.09574 7.10790 7.38345 7.48287 7.66252 8.01592 8.09831 8.38502 8.61603 8.95296 9.52288 10.98206 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.005513 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.382518 B = 5077.579563 C = 5878.877635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.190 3.810 4 H 0.008 0.992 5 C -0.538 4.538 6 H 0.074 0.926 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.863 3.137 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.675 5.675 14 C 0.128 3.872 15 C -0.142 4.142 16 C 0.064 3.936 17 N -0.584 5.584 18 H 0.416 0.584 19 C 0.282 3.718 20 N -0.506 5.506 21 C 0.132 3.868 22 C -0.206 4.206 23 C -0.021 4.021 24 C -0.142 4.142 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.340 0.660 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 8.573 7.967 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C 0.081 3.919 4 H 0.025 0.975 5 C -0.575 4.575 6 H 0.092 0.908 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.307 5.307 14 C -0.002 4.002 15 C -0.149 4.149 16 C -0.061 4.061 17 N -0.191 5.191 18 H 0.253 0.747 19 C 0.049 3.951 20 N -0.220 5.220 21 C -0.033 4.033 22 C -0.228 4.228 23 C -0.048 4.048 24 C -0.149 4.149 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.194 0.806 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.235 8.110 8.865 17.148 hybrid contribution 0.336 0.350 -1.749 1.815 sum -11.900 8.460 7.115 16.242 Atomic orbital electron populations 1.21851 0.98670 0.99634 1.00418 1.21819 0.92687 0.99327 1.00709 1.19461 0.95202 0.90901 0.86317 0.97469 1.21312 0.89628 1.44054 1.02550 0.90766 1.24898 0.94729 0.93868 0.98890 1.70002 1.12136 1.42432 1.27941 0.87196 0.82173 0.77939 0.83742 1.20644 1.21451 1.17598 1.60684 1.13271 1.30526 1.26178 1.20347 0.96920 0.92543 0.90405 1.20382 0.96361 0.98698 0.99487 1.21645 1.01255 0.96218 0.87027 1.41476 1.24131 1.31336 1.22152 0.74676 1.18379 0.90438 0.93414 0.92863 1.66435 1.14889 1.07580 1.33089 1.22357 0.89428 0.96572 0.94992 1.21827 1.02844 1.01148 0.96996 1.21094 0.92770 0.92147 0.98776 1.19826 0.98060 1.00099 0.96942 0.92434 0.94735 0.94574 0.92439 0.93275 0.92652 0.84191 0.95080 0.90943 0.80645 0.82638 0.84722 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.49 37.16 0.35 -2.29 16 2 C -0.11 -2.32 4.95 -26.73 -0.13 -2.45 16 3 C 0.19 4.34 1.74 -68.87 -0.12 4.22 16 4 H 0.01 0.18 6.16 -51.93 -0.32 -0.14 16 5 C -0.54 -14.61 9.00 -34.44 -0.31 -14.92 16 6 H 0.07 2.19 7.62 -52.48 -0.40 1.79 16 7 C 0.08 2.23 5.30 -17.82 -0.09 2.14 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 9 Si 0.86 20.84 25.86 -169.99 -4.40 16.44 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.25 -5.74 5.65 56.52 0.32 -5.42 16 13 N -0.68 -13.42 5.97 -109.22 -0.65 -14.07 16 14 C 0.13 2.13 5.63 -4.97 -0.03 2.11 16 15 C -0.14 -2.14 5.80 -102.76 -0.60 -2.74 16 16 C 0.06 0.79 11.74 -16.69 -0.20 0.60 16 17 N -0.58 -7.06 6.05 -12.14 -0.07 -7.13 16 18 H 0.42 3.74 8.96 -40.82 -0.37 3.37 16 19 C 0.28 4.22 8.43 -155.69 -1.31 2.91 16 20 N -0.51 -7.39 10.39 -12.27 -0.13 -7.51 16 21 C 0.13 1.63 11.14 -17.50 -0.20 1.43 16 22 C -0.21 -2.56 10.10 -39.44 -0.40 -2.96 16 23 C -0.02 -0.31 10.22 -39.05 -0.40 -0.71 16 24 C -0.14 -2.23 6.37 -105.11 -0.67 -2.89 16 25 H 0.06 0.96 6.28 -51.93 -0.33 0.63 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.13 5.17 -51.93 -0.27 0.86 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.34 7.15 7.79 -39.29 -0.31 6.84 16 32 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.07 1.13 6.63 -51.93 -0.34 0.78 16 34 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -31.42 303.64 -8.92 -40.35 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.93 Total: 8.72 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -4.10 Total: -15.56 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.08 Total: -54.53 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.40 Total: 16.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.42 -8.92 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091018156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.821 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds