Wall clock time and date at job start Mon Mar 30 2020 06:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47586 * 2 1 4 4 H 1.09006 * 109.47057 * 305.65354 * 3 2 1 5 5 C 1.50699 * 109.47321 * 185.65776 * 3 2 1 6 6 H 1.08005 * 119.99315 * 245.39178 * 5 3 2 7 7 C 1.37877 * 120.00458 * 65.38881 * 5 3 2 8 8 N 1.31511 * 120.00049 * 197.20225 * 7 5 3 9 9 Si 1.86799 * 119.99770 * 17.20023 * 7 5 3 10 10 H 1.48504 * 109.46828 * 86.80713 * 9 7 5 11 11 H 1.48498 * 109.46863 * 206.80828 * 9 7 5 12 12 H 1.48501 * 109.47139 * 326.80737 * 9 7 5 13 13 N 1.46902 * 109.47238 * 65.64892 * 3 2 1 14 14 C 1.46900 * 111.00037 * 251.31080 * 13 3 2 15 15 C 1.50705 * 109.46801 * 183.07495 * 14 13 3 16 16 C 1.34229 * 126.56116 * 259.69095 * 15 14 13 17 17 N 1.36924 * 109.90966 * 179.83358 * 16 15 14 18 18 H 0.96997 * 124.98296 * 180.18172 * 17 16 15 19 19 C 1.37424 * 110.02463 * 0.44452 * 17 16 15 20 20 N 1.32648 * 133.19244 * 179.74043 * 19 17 16 21 21 C 1.31587 * 121.67265 * 179.97438 * 20 19 17 22 22 C 1.38663 * 121.58162 * 359.97438 * 21 20 19 23 23 C 1.38202 * 119.41239 * 359.97438 * 22 21 20 24 24 C 1.39690 * 118.03809 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.46936 * 305.51318 * 1 2 3 26 26 H 1.09000 * 109.47442 * 185.51179 * 1 2 3 27 27 H 1.09002 * 109.46814 * 65.51205 * 1 2 3 28 28 H 1.09007 * 109.47079 * 119.99933 * 2 1 3 29 29 H 1.08997 * 109.47206 * 239.99277 * 2 1 3 30 30 H 0.96994 * 120.00184 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99693 * 127.35876 * 13 3 2 32 32 H 1.08998 * 109.47414 * 303.07039 * 14 13 3 33 33 H 1.08996 * 109.47118 * 63.07574 * 14 13 3 34 34 H 1.07995 * 125.04932 * 359.97080 * 16 15 14 35 35 H 1.08002 * 119.20969 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.29354 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.97851 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4447 -0.1401 6 1 4.1578 1.8068 0.6689 7 6 4.1253 0.9844 -1.3007 8 7 5.4012 0.6658 -1.3127 9 14 3.1053 0.8133 -2.8563 10 1 3.0966 2.1061 -3.5871 11 1 3.6945 -0.2403 -3.7211 12 1 1.7141 0.4382 -2.4972 13 7 1.6649 2.0945 1.2618 14 6 0.6098 3.0933 1.0448 15 6 0.3052 3.7925 2.3446 16 6 -0.7265 3.5404 3.1655 17 7 -0.6729 4.3733 4.2510 18 1 -1.3107 4.3761 4.9819 19 6 0.4136 5.2087 4.1500 20 7 0.8905 6.1754 4.9231 21 6 1.9757 6.8461 4.6004 22 6 2.6768 6.5758 3.4350 23 6 2.2291 5.5786 2.5894 24 6 1.0752 4.8795 2.9516 25 1 -0.3633 0.5970 0.8365 26 1 -0.3634 -1.0229 0.0987 27 1 -0.3633 0.4260 -0.9353 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 5.8126 0.3417 -2.1291 31 1 2.4695 2.5094 1.7074 32 1 0.9467 3.8239 0.3095 33 1 -0.2897 2.5980 0.6792 34 1 -1.4848 2.7904 2.9963 35 1 2.3292 7.6252 5.2595 36 1 3.5649 7.1396 3.1903 37 1 2.7553 5.3472 1.6751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091018156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:01 Heat of formation + Delta-G solvation = 47.134475 kcal Electronic energy + Delta-G solvation = -18895.721246 eV Core-core repulsion = 16058.433230 eV Total energy + Delta-G solvation = -2837.288016 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41717 -38.81489 -38.08942 -34.86591 -33.94413 -32.86338 -31.00248 -30.39041 -28.84389 -25.61960 -24.57935 -24.02348 -23.41787 -21.36299 -20.47821 -19.26699 -18.71944 -17.63332 -17.05716 -16.86330 -16.10646 -15.66824 -15.56869 -15.29669 -14.85071 -14.60997 -14.19832 -13.99863 -13.75689 -13.61174 -13.21875 -13.14596 -13.05578 -12.72657 -12.53331 -12.40403 -11.93810 -11.58850 -11.35025 -11.18588 -11.09476 -10.54710 -10.33711 -9.36482 -9.09762 -8.78903 -8.31976 -6.30446 0.08299 0.45319 1.35231 1.38313 1.48656 1.71380 1.92686 2.35889 2.96095 3.02815 3.64367 3.73531 3.85780 3.94243 4.12057 4.26469 4.51122 4.53063 4.57067 4.63384 4.70279 4.72407 4.81015 4.92928 4.96692 5.11768 5.28363 5.38588 5.38705 5.50205 5.51606 5.61539 5.66629 5.86785 6.04456 6.06632 6.48029 6.51595 6.71987 6.89350 7.09371 7.35188 8.84563 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.005513 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.382518 B = 5077.579563 C = 5878.877635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.196 3.804 4 H 0.009 0.991 5 C -0.542 4.542 6 H 0.033 0.967 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.226 1.226 13 N -0.671 5.671 14 C 0.136 3.864 15 C -0.182 4.182 16 C 0.094 3.906 17 N -0.572 5.572 18 H 0.432 0.568 19 C 0.260 3.740 20 N -0.519 5.519 21 C 0.128 3.872 22 C -0.199 4.199 23 C -0.050 4.050 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.328 0.672 32 H 0.015 0.985 33 H 0.092 0.908 34 H 0.216 0.784 35 H 0.193 0.807 36 H 0.161 0.839 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 8.848 8.311 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.086 3.914 4 H 0.026 0.974 5 C -0.580 4.580 6 H 0.051 0.949 7 C -0.175 4.175 8 N -0.578 5.578 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.148 1.148 13 N -0.301 5.301 14 C 0.006 3.994 15 C -0.189 4.189 16 C -0.033 4.033 17 N -0.179 5.179 18 H 0.272 0.728 19 C 0.027 3.973 20 N -0.233 5.233 21 C -0.037 4.037 22 C -0.220 4.220 23 C -0.077 4.077 24 C -0.172 4.172 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.033 0.967 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.210 0.790 36 H 0.179 0.821 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.161 8.399 9.241 19.642 hybrid contribution 1.303 0.342 -1.720 2.185 sum -13.858 8.740 7.521 18.028 Atomic orbital electron populations 1.21755 0.94999 1.01450 1.01466 1.21733 0.95949 0.97626 0.99340 1.19343 0.92041 0.92291 0.87702 0.97369 1.21644 0.92074 1.42931 1.01319 0.94922 1.25757 0.95796 0.93672 1.02324 1.70139 1.14313 1.44438 1.28914 0.86171 0.81749 0.77947 0.79147 1.20204 1.21447 1.14828 1.60720 1.13312 1.31742 1.24328 1.20287 0.96130 0.91591 0.91355 1.20254 0.98424 1.00144 1.00102 1.22172 1.00343 0.95229 0.85529 1.41515 1.23572 1.30375 1.22474 0.72783 1.18629 0.91461 0.94264 0.92938 1.66528 1.15714 1.07804 1.33271 1.23010 0.88636 0.96757 0.95295 1.22153 1.03305 1.00156 0.96409 1.21226 0.93430 0.93696 0.99314 1.20101 0.98635 1.00726 0.97753 0.91111 0.92654 0.93718 0.93906 0.94709 0.92595 0.85540 0.96653 0.89015 0.76781 0.79000 0.82141 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.49 71.98 0.68 -3.78 16 2 C -0.11 -4.53 4.95 30.59 0.15 -4.38 16 3 C 0.20 8.89 1.74 44.17 0.08 8.97 16 4 H 0.01 0.39 6.16 -2.38 -0.01 0.38 16 5 C -0.54 -30.47 9.00 25.60 0.23 -30.24 16 6 H 0.03 2.05 7.62 -2.91 -0.02 2.03 16 7 C 0.02 1.34 5.30 84.66 0.45 1.79 16 8 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 9 Si 0.93 43.08 25.86 68.60 1.77 44.85 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.23 -9.46 5.65 99.48 0.56 -8.90 16 13 N -0.67 -26.67 5.97 -499.46 -2.98 -29.65 16 14 C 0.14 4.40 5.63 85.56 0.48 4.88 16 15 C -0.18 -5.30 5.80 -18.66 -0.11 -5.41 16 16 C 0.09 2.06 11.74 82.98 0.97 3.03 16 17 N -0.57 -12.46 6.05 -192.33 -1.16 -13.63 16 18 H 0.43 6.53 8.96 -92.71 -0.83 5.70 16 19 C 0.26 7.47 8.43 133.93 1.13 8.60 16 20 N -0.52 -14.42 10.39 -192.73 -2.00 -16.42 16 21 C 0.13 2.96 11.14 84.83 0.95 3.90 16 22 C -0.20 -4.79 10.10 22.36 0.23 -4.57 16 23 C -0.05 -1.51 10.22 22.61 0.23 -1.28 16 24 C -0.16 -5.16 6.37 -20.18 -0.13 -5.28 16 25 H 0.07 2.07 6.28 -2.38 -0.01 2.06 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.03 1.54 5.17 -2.39 -0.01 1.52 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.33 14.39 7.79 -89.70 -0.70 13.69 16 32 H 0.02 0.54 8.08 -2.39 -0.02 0.52 16 33 H 0.09 2.59 6.63 -2.39 -0.02 2.57 16 34 H 0.22 2.86 8.06 -2.91 -0.02 2.83 16 35 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -70.49 303.64 0.69 -69.80 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.58 Total: 26.75 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 5.34 Total: -23.76 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -5.85 Total: -117.65 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.77 Total: 44.85 kcal Total: -70.49 0.69 -69.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091018156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.938 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds