Wall clock time and date at job start Mon Mar 30 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99918 * 2 1 4 4 H 1.48493 * 109.47407 * 270.00326 * 3 2 1 5 5 H 1.48504 * 109.47051 * 30.00237 * 3 2 1 6 6 H 1.48500 * 109.47184 * 149.99809 * 3 2 1 7 7 C 1.37874 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99439 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00247 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47610 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.36907 * 124.99236 * 265.02294 * 12 11 10 14 14 C 1.34226 * 109.92082 * 179.97438 * 13 12 11 15 15 C 1.50701 * 126.57353 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47283 * 260.02553 * 15 14 13 17 17 C 1.46394 * 106.86128 * 0.02562 * 14 13 12 18 18 C 1.39688 * 134.31756 * 180.02562 * 17 14 13 19 19 C 1.38197 * 118.04418 * 180.02562 * 18 17 14 20 20 C 1.38668 * 119.40495 * 359.97438 * 19 18 17 21 21 N 1.31587 * 121.58680 * 0.25212 * 20 19 18 22 22 C 1.32653 * 121.67049 * 359.49012 * 21 20 19 23 23 H 0.97000 * 119.99917 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47213 * 60.00050 * 9 7 2 25 25 H 1.09004 * 109.47287 * 300.00132 * 9 7 2 26 26 H 1.09000 * 109.47159 * 59.99750 * 10 9 7 27 27 H 1.09004 * 109.46836 * 300.00142 * 10 9 7 28 28 H 1.09000 * 109.47013 * 59.99723 * 11 10 9 29 29 H 1.08998 * 109.46768 * 299.99854 * 11 10 9 30 30 H 1.08002 * 125.04268 * 359.97438 * 13 12 11 31 31 H 1.09000 * 109.46483 * 20.02568 * 15 14 13 32 32 H 1.08998 * 109.46698 * 140.02213 * 15 14 13 33 33 H 1.00902 * 111.00368 * 56.03772 * 16 15 14 34 34 H 1.00898 * 111.00156 * 179.97438 * 16 15 14 35 35 H 1.08003 * 120.97565 * 0.02562 * 18 17 14 36 36 H 1.07998 * 120.29933 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.20350 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6365 -0.0035 12 7 6.0399 -4.0176 -0.0040 13 6 6.3943 -4.7255 1.1130 14 6 6.7970 -5.9577 0.7649 15 6 7.2675 -7.0452 1.6961 16 7 8.7357 -7.0919 1.6922 17 6 6.6916 -6.0429 -0.6927 18 6 6.9560 -7.0410 -1.6336 19 6 6.7313 -6.7533 -2.9665 20 6 6.2564 -5.4999 -3.3219 21 7 6.0178 -4.5721 -2.4198 22 6 6.2101 -4.7927 -1.1260 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6799 -0.8911 26 1 3.6579 -3.1497 -0.8924 27 1 3.6586 -3.1508 0.8875 28 1 5.9157 -2.1231 0.8864 29 1 5.9142 -2.1222 -0.8935 30 1 6.3556 -4.3484 2.1243 31 1 6.9132 -6.8372 2.7058 32 1 6.8724 -8.0048 1.3629 33 1 9.1268 -6.1941 1.9353 34 1 9.0761 -7.8135 2.3098 35 1 7.3252 -8.0090 -1.3283 36 1 6.9231 -7.4983 -3.7245 37 1 6.0823 -5.2785 -4.3645 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091018536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:57 Heat of formation + Delta-G solvation = 61.483760 kcal Electronic energy + Delta-G solvation = -18459.133110 eV Core-core repulsion = 15622.467325 eV Total energy + Delta-G solvation = -2836.665784 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47374 -37.92276 -35.63715 -34.20883 -32.63944 -31.95543 -30.15075 -29.16770 -27.21289 -24.65804 -23.72426 -22.94849 -21.58165 -20.27274 -19.44744 -17.20345 -16.90425 -16.53697 -16.13343 -15.62859 -15.02042 -14.46350 -14.43947 -14.21611 -14.04842 -13.51611 -13.07554 -12.92541 -12.72099 -12.51180 -12.09275 -11.82236 -11.68843 -11.54645 -11.09596 -10.84755 -10.23547 -10.06842 -9.85466 -9.74425 -9.25826 -9.18128 -8.84748 -8.57187 -8.22298 -7.75549 -6.07087 -4.05888 1.14892 1.53661 2.67324 2.77758 3.28574 3.35687 3.37633 4.06741 4.41874 4.46610 4.57380 4.70093 4.75781 5.03325 5.09366 5.24602 5.28300 5.31125 5.44808 5.52861 5.55341 5.66265 5.78400 5.80275 6.01771 6.29912 6.36299 6.44211 6.55596 6.69270 6.75316 6.94532 7.17093 7.19902 7.26139 7.30586 7.35586 7.73909 8.21658 8.50329 8.97353 9.54391 11.06392 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.004447 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.278837 B = 6294.636334 C = 6904.764955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.105 3.895 12 N -0.461 5.461 13 C 0.076 3.924 14 C -0.178 4.178 15 C 0.141 3.859 16 N -0.847 5.847 17 C -0.136 4.136 18 C -0.025 4.025 19 C -0.211 4.211 20 C 0.133 3.867 21 N -0.491 5.491 22 C 0.289 3.711 23 H 0.263 0.737 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.170 0.830 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.341 0.659 34 H 0.338 0.662 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.717 -13.747 1.262 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.016 4.016 12 N -0.144 5.144 13 C -0.052 4.052 14 C -0.187 4.187 15 C 0.010 3.990 16 N -0.377 5.377 17 C -0.143 4.143 18 C -0.052 4.052 19 C -0.232 4.232 20 C -0.034 4.034 21 N -0.204 5.204 22 C 0.056 3.944 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.188 0.812 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 17.048 -12.606 0.326 21.205 hybrid contribution 0.419 0.462 1.207 1.359 sum 17.467 -12.144 1.533 21.329 Atomic orbital electron populations 1.69914 1.06315 1.26934 1.50962 1.25029 0.94748 0.99170 0.94492 0.86764 0.80249 0.83569 0.78593 1.20183 1.21329 1.19084 1.21072 0.89242 0.94540 1.51033 0.91091 1.19505 0.97523 0.91278 0.96405 1.21839 0.90451 1.00817 1.02144 1.22208 0.97525 0.78124 1.03698 1.44111 1.54103 1.12884 1.03306 1.21694 1.00561 0.91661 0.91251 1.19912 1.11270 0.95575 0.91901 1.19919 0.87502 0.96563 0.94973 1.58712 1.07253 1.10715 1.61033 1.19635 1.05892 0.94808 0.93943 1.20856 0.94843 0.97848 0.91612 1.21798 1.05948 0.98962 0.96513 1.22412 0.94611 0.88623 0.97761 1.66463 1.18948 1.35575 0.99372 1.18403 0.99549 0.89114 0.87317 0.92675 0.96501 0.96726 0.91913 0.92349 0.89644 0.89428 0.81232 0.94844 0.90532 0.84713 0.84974 0.85254 0.85024 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.22 4.04 -27.89 -0.11 -0.33 16 10 C -0.11 -2.32 5.48 -26.73 -0.15 -2.46 16 11 C 0.10 1.73 6.05 -4.04 -0.02 1.70 16 12 N -0.46 -7.34 2.77 -116.27 -0.32 -7.66 16 13 C 0.08 1.00 11.19 -16.70 -0.19 0.82 16 14 C -0.18 -2.29 5.83 -102.76 -0.60 -2.89 16 15 C 0.14 1.36 7.32 -4.98 -0.04 1.32 16 16 N -0.85 -7.27 9.61 -11.41 -0.11 -7.38 16 17 C -0.14 -2.02 6.37 -105.11 -0.67 -2.69 16 18 C -0.03 -0.32 10.22 -39.06 -0.40 -0.72 16 19 C -0.21 -2.48 10.10 -39.44 -0.40 -2.88 16 20 C 0.13 1.81 11.14 -17.50 -0.20 1.61 16 21 N -0.49 -8.48 10.39 -12.27 -0.13 -8.60 16 22 C 0.29 4.91 7.91 -155.69 -1.23 3.68 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.20 8.12 -51.93 -0.42 0.78 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.34 2.77 8.99 -39.29 -0.35 2.41 16 34 H 0.34 2.12 9.08 -39.29 -0.36 1.76 16 35 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -33.79 315.92 -9.41 -43.20 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.29 Total: 2.32 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -4.43 Total: -16.36 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.21 Total: -50.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.79 -9.41 -43.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091018536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.683 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds