Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99918 * 2 1 4 4 H 1.48493 * 109.47407 * 270.00326 * 3 2 1 5 5 H 1.48504 * 109.47051 * 30.00237 * 3 2 1 6 6 H 1.48500 * 109.47184 * 149.99809 * 3 2 1 7 7 C 1.37874 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99439 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00247 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47311 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47610 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.36907 * 124.99236 * 265.02294 * 12 11 10 14 14 C 1.34226 * 109.92082 * 179.97438 * 13 12 11 15 15 C 1.50701 * 126.57353 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47283 * 260.02553 * 15 14 13 17 17 C 1.46394 * 106.86128 * 0.02562 * 14 13 12 18 18 C 1.39688 * 134.31756 * 180.02562 * 17 14 13 19 19 C 1.38197 * 118.04418 * 180.02562 * 18 17 14 20 20 C 1.38668 * 119.40495 * 359.97438 * 19 18 17 21 21 N 1.31587 * 121.58680 * 0.25212 * 20 19 18 22 22 C 1.32653 * 121.67049 * 359.49012 * 21 20 19 23 23 H 0.97000 * 119.99917 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47213 * 60.00050 * 9 7 2 25 25 H 1.09004 * 109.47287 * 300.00132 * 9 7 2 26 26 H 1.09000 * 109.47159 * 59.99750 * 10 9 7 27 27 H 1.09004 * 109.46836 * 300.00142 * 10 9 7 28 28 H 1.09000 * 109.47013 * 59.99723 * 11 10 9 29 29 H 1.08998 * 109.46768 * 299.99854 * 11 10 9 30 30 H 1.08002 * 125.04268 * 359.97438 * 13 12 11 31 31 H 1.09000 * 109.46483 * 20.02568 * 15 14 13 32 32 H 1.08998 * 109.46698 * 140.02213 * 15 14 13 33 33 H 1.00902 * 111.00368 * 56.03772 * 16 15 14 34 34 H 1.00898 * 111.00156 * 179.97438 * 16 15 14 35 35 H 1.08003 * 120.97565 * 0.02562 * 18 17 14 36 36 H 1.07998 * 120.29933 * 180.02562 * 19 18 17 37 37 H 1.07997 * 119.20350 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6365 -0.0035 12 7 6.0399 -4.0176 -0.0040 13 6 6.3943 -4.7255 1.1130 14 6 6.7970 -5.9577 0.7649 15 6 7.2675 -7.0452 1.6961 16 7 8.7357 -7.0919 1.6922 17 6 6.6916 -6.0429 -0.6927 18 6 6.9560 -7.0410 -1.6336 19 6 6.7313 -6.7533 -2.9665 20 6 6.2564 -5.4999 -3.3219 21 7 6.0178 -4.5721 -2.4198 22 6 6.2101 -4.7927 -1.1260 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6799 -0.8911 26 1 3.6579 -3.1497 -0.8924 27 1 3.6586 -3.1508 0.8875 28 1 5.9157 -2.1231 0.8864 29 1 5.9142 -2.1222 -0.8935 30 1 6.3556 -4.3484 2.1243 31 1 6.9132 -6.8372 2.7058 32 1 6.8724 -8.0048 1.3629 33 1 9.1268 -6.1941 1.9353 34 1 9.0761 -7.8135 2.3098 35 1 7.3252 -8.0090 -1.3283 36 1 6.9231 -7.4983 -3.7245 37 1 6.0823 -5.2785 -4.3645 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091018536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = 39.036016 kcal Electronic energy + Delta-G solvation = -18460.106517 eV Core-core repulsion = 15622.467325 eV Total energy + Delta-G solvation = -2837.639191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.51757 -38.98484 -36.83309 -35.63308 -34.22690 -33.29548 -31.53700 -30.15874 -28.73277 -25.88751 -24.85381 -24.13565 -22.86824 -21.99602 -20.42553 -19.05342 -18.02251 -17.86014 -17.00311 -16.62570 -16.27479 -16.14133 -15.73859 -15.32609 -15.14480 -14.83251 -14.32970 -14.18022 -14.12798 -13.67548 -13.42984 -13.27544 -12.93954 -12.66855 -12.59542 -12.42843 -11.86155 -11.80570 -11.63820 -11.43695 -11.13042 -10.80682 -10.24322 -9.50727 -9.28153 -8.79699 -8.33059 -6.39050 0.14748 0.49847 1.35207 1.37187 1.48947 1.65586 1.72909 2.33825 3.01146 3.02142 3.42168 3.65297 3.80251 3.96066 3.98956 4.08118 4.17346 4.31683 4.35923 4.42385 4.57145 4.60853 4.66454 4.74319 4.83629 4.91096 4.95749 5.11924 5.35208 5.39955 5.44429 5.57076 5.59930 5.72975 6.17707 6.18865 6.24472 6.34388 6.68274 6.72523 7.15146 7.25568 8.84200 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.004447 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.278837 B = 6294.636334 C = 6904.764955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.238 1.238 7 C -0.538 4.538 8 H 0.022 0.978 9 C -0.004 4.004 10 C -0.100 4.100 11 C 0.118 3.882 12 N -0.473 5.473 13 C 0.065 3.935 14 C -0.176 4.176 15 C 0.145 3.855 16 N -0.853 5.853 17 C -0.154 4.154 18 C -0.031 4.031 19 C -0.201 4.201 20 C 0.119 3.881 21 N -0.535 5.535 22 C 0.250 3.750 23 H 0.268 0.732 24 H 0.036 0.964 25 H 0.020 0.980 26 H 0.029 0.971 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.201 0.799 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.344 0.656 34 H 0.352 0.648 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.422 -13.941 1.925 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.161 1.161 7 C -0.576 4.576 8 H 0.040 0.960 9 C -0.042 4.042 10 C -0.138 4.138 11 C -0.003 4.003 12 N -0.157 5.157 13 C -0.061 4.061 14 C -0.184 4.184 15 C 0.015 3.985 16 N -0.385 5.385 17 C -0.161 4.161 18 C -0.057 4.057 19 C -0.222 4.222 20 C -0.047 4.047 21 N -0.248 5.248 22 C 0.018 3.982 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.218 0.782 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 19.784 -12.847 1.002 23.611 hybrid contribution -0.486 0.351 0.924 1.101 sum 19.298 -12.497 1.926 23.071 Atomic orbital electron populations 1.70082 1.08526 1.28361 1.52358 1.26100 0.95690 1.03834 0.93764 0.85569 0.79724 0.77555 0.79256 1.19387 1.20763 1.16071 1.21428 0.92183 0.92928 1.51069 0.95953 1.19423 0.93910 0.93676 0.97226 1.21585 0.93722 0.98254 1.00277 1.21922 0.94154 0.79341 1.04867 1.44123 1.54948 1.12680 1.03993 1.22273 1.00357 0.91763 0.91748 1.20312 1.10389 0.96227 0.91476 1.19914 0.88169 0.95424 0.95010 1.58647 1.06593 1.11449 1.61813 1.20052 1.06029 0.94599 0.95425 1.21250 0.94350 0.98370 0.91755 1.22192 1.04027 0.98836 0.97148 1.22983 0.94212 0.89092 0.98418 1.66431 1.20643 1.37528 1.00246 1.18823 1.01216 0.90496 0.87651 0.92367 0.94593 0.96182 0.95167 0.92893 0.86514 0.90139 0.78232 0.93132 0.90401 0.84385 0.83395 0.82876 0.81303 0.80377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.96 44.25 27.47 68.60 1.88 46.13 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 7 C -0.54 -32.09 9.66 25.60 0.25 -31.84 16 8 H 0.02 1.49 7.99 -2.91 -0.02 1.46 16 9 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 10 C -0.10 -4.12 5.48 30.59 0.17 -3.95 16 11 C 0.12 3.80 6.05 86.38 0.52 4.32 16 12 N -0.47 -14.85 2.77 -521.75 -1.45 -16.30 16 13 C 0.06 1.60 11.19 82.98 0.93 2.53 16 14 C -0.18 -4.25 5.83 -18.66 -0.11 -4.36 16 15 C 0.15 2.45 7.32 85.56 0.63 3.08 16 16 N -0.85 -12.51 9.61 -190.02 -1.83 -14.33 16 17 C -0.15 -4.45 6.37 -20.18 -0.13 -4.58 16 18 C -0.03 -0.73 10.22 22.61 0.23 -0.50 16 19 C -0.20 -4.35 10.10 22.36 0.23 -4.12 16 20 C 0.12 3.16 11.14 84.83 0.95 4.11 16 21 N -0.53 -18.78 10.39 -192.73 -2.00 -20.78 16 22 C 0.25 8.54 7.91 133.93 1.06 9.60 16 23 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 25 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.12 2.98 8.12 -2.39 -0.02 2.96 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.34 4.77 8.99 -89.69 -0.81 3.96 16 34 H 0.35 3.48 9.08 -89.70 -0.81 2.66 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -76.63 315.92 1.62 -75.02 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.59 Total: 16.20 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 5.30 Total: -25.17 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -4.97 Total: -112.18 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -76.63 1.62 -75.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091018536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.054 kcal (2) G-P(sol) polarization free energy of solvation -76.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds