Wall clock time and date at job start Mon Mar 30 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 N 1.46899 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00266 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47299 * 180.02562 * 5 4 3 7 7 C 1.34290 * 126.52654 * 260.31520 * 6 5 4 8 8 N 1.37091 * 109.91339 * 180.13433 * 7 6 5 9 9 C 1.37288 * 125.02892 * 179.85247 * 8 7 6 10 10 H 1.08005 * 119.99855 * 203.58278 * 9 8 7 11 11 C 1.38864 * 120.00228 * 23.57735 * 9 8 7 12 12 N 1.31429 * 120.00398 * 196.46411 * 11 9 8 13 13 Si 1.86806 * 119.99715 * 16.46599 * 11 9 8 14 14 H 1.48500 * 109.46797 * 269.99645 * 13 11 9 15 15 H 1.48502 * 109.47138 * 29.99756 * 13 11 9 16 16 H 1.48492 * 109.47019 * 150.00042 * 13 11 9 17 17 C 1.37938 * 109.93772 * 359.58631 * 8 7 6 18 18 N 1.32540 * 133.18314 * 180.26597 * 17 8 7 19 19 C 1.31650 * 121.68401 * 179.97438 * 18 17 8 20 20 C 1.38623 * 121.55527 * 0.02562 * 19 18 17 21 21 C 1.38322 * 119.39484 * 359.97438 * 20 19 18 22 22 C 1.39602 * 118.03733 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.46607 * 299.99619 * 1 2 3 24 24 H 1.08995 * 109.47231 * 59.99472 * 1 2 3 25 25 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46989 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.47141 * 120.00964 * 2 1 3 28 28 H 1.08996 * 109.46957 * 60.00595 * 3 2 1 29 29 H 1.08995 * 109.47387 * 300.00432 * 3 2 1 30 30 H 1.00899 * 111.00078 * 303.95987 * 4 3 2 31 31 H 1.09001 * 109.47043 * 60.00142 * 5 4 3 32 32 H 1.09003 * 109.47032 * 299.99990 * 5 4 3 33 33 H 1.08001 * 125.04195 * 359.96117 * 7 6 5 34 34 H 0.97002 * 119.99724 * 355.20732 * 12 11 9 35 35 H 1.07999 * 119.21776 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.30222 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.98303 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0356 2.8138 0.0000 6 6 5.5421 2.7735 -0.0013 7 6 6.3468 2.9328 1.0619 8 7 7.6580 2.8351 0.6738 9 6 8.7388 2.9526 1.5122 10 1 9.7010 3.2415 1.1156 11 6 8.5949 2.7002 2.8701 12 7 9.5118 3.1135 3.7162 13 14 7.0981 1.7731 3.4943 14 1 6.0152 2.7382 3.8121 15 1 6.6288 0.8292 2.4483 16 1 7.4605 1.0150 4.7186 17 6 7.7305 2.5952 -0.6826 18 7 8.7429 2.4207 -1.5200 19 6 8.5487 2.2005 -2.8033 20 6 7.2738 2.1403 -3.3443 21 6 6.1773 2.3149 -2.5193 22 6 6.4076 2.5472 -1.1621 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8710 0.9161 0.7804 31 1 3.6865 3.3366 0.8904 32 1 3.6857 3.3377 -0.8896 33 1 6.0109 3.1141 2.0722 34 1 10.3220 3.5331 3.3866 35 1 9.4028 2.0642 -3.4500 36 1 7.1378 1.9588 -4.4002 37 1 5.1727 2.2727 -2.9134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091020367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:29 Heat of formation + Delta-G solvation = 60.854765 kcal Electronic energy + Delta-G solvation = -18896.165909 eV Core-core repulsion = 16059.472849 eV Total energy + Delta-G solvation = -2836.693059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63356 -37.23699 -36.59415 -33.87927 -32.82570 -31.68873 -29.84908 -28.63556 -26.48283 -24.55569 -23.20449 -22.45232 -21.35306 -21.10085 -19.36908 -18.01509 -16.33203 -16.15009 -15.81509 -15.10474 -14.86151 -14.47712 -14.20748 -14.10370 -13.64243 -13.30448 -12.85098 -12.73145 -12.30542 -12.25205 -11.97029 -11.88137 -11.64087 -11.29054 -11.15300 -10.91276 -10.75047 -10.58403 -10.19298 -9.88711 -9.53603 -9.10820 -8.43911 -8.12919 -7.66252 -7.31766 -7.10559 -4.42107 1.88210 2.27704 2.93817 3.14727 3.27012 3.47679 3.88641 3.98780 4.47536 4.69083 4.94394 4.98669 5.05257 5.32647 5.37945 5.46449 5.55074 5.61071 5.67834 5.72086 5.74028 5.80712 5.92491 5.97876 6.00434 6.15456 6.23588 6.25408 6.42497 6.63418 6.77459 7.11169 7.19454 7.31014 7.50004 7.54324 7.67501 7.73746 8.19445 8.63956 8.77544 9.26652 10.11405 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.007691 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.852523 B = 3639.520551 C = 5261.393333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.057 3.943 4 N -0.687 5.687 5 C 0.148 3.852 6 C -0.207 4.207 7 C 0.012 3.988 8 N -0.274 5.274 9 C -0.403 4.403 10 H 0.109 0.891 11 C 0.026 3.974 12 N -0.842 5.842 13 Si 1.055 2.945 14 H -0.276 1.276 15 H -0.263 1.263 16 H -0.280 1.280 17 C 0.234 3.766 18 N -0.480 5.480 19 C 0.105 3.895 20 C -0.227 4.227 21 C -0.030 4.030 22 C -0.142 4.142 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.341 0.659 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.284 0.716 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 -3.211 -6.414 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.073 4.073 4 N -0.319 5.319 5 C 0.019 3.981 6 C -0.215 4.215 7 C -0.123 4.123 8 N 0.062 4.938 9 C -0.531 4.531 10 H 0.127 0.873 11 C -0.186 4.186 12 N -0.470 5.470 13 Si 0.881 3.119 14 H -0.204 1.204 15 H -0.188 1.188 16 H -0.206 1.206 17 C 0.000 4.000 18 N -0.192 5.192 19 C -0.066 4.066 20 C -0.249 4.249 21 C -0.056 4.056 22 C -0.150 4.150 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.862 -3.678 -4.991 14.279 hybrid contribution 0.090 0.851 -0.714 1.115 sum -12.773 -2.826 -5.705 14.272 Atomic orbital electron populations 1.21726 0.95900 1.01494 1.01637 1.21512 0.95185 0.96837 1.02631 1.21991 0.88622 0.96541 1.00099 1.60578 1.05910 1.14945 1.50429 1.19960 0.89888 0.88538 0.99666 1.19429 0.93016 1.17708 0.91379 1.21490 0.82934 1.08849 0.98986 1.40322 1.05027 1.44621 1.03783 1.21144 0.90933 1.50431 0.90576 0.87292 1.26617 1.04926 0.95695 0.91368 1.70798 1.08772 1.31329 1.36075 0.83880 0.73507 0.77401 0.77088 1.20357 1.18777 1.20618 1.18447 0.89631 1.05503 0.86430 1.66220 1.35331 1.14216 1.03389 1.22086 0.95964 0.98916 0.89622 1.21534 0.93802 1.09777 0.99836 1.20662 0.98163 0.95433 0.91376 1.19361 0.93301 1.08671 0.93679 0.92973 0.92750 0.92770 0.91142 0.92227 0.95781 0.91342 0.84153 0.95334 0.91094 0.82668 0.90504 0.84039 0.86306 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.30 6.19 -26.73 -0.17 -1.46 16 3 C 0.06 0.68 5.69 -3.83 -0.02 0.65 16 4 N -0.69 -10.33 6.49 -115.06 -0.75 -11.08 16 5 C 0.15 2.42 6.22 -4.98 -0.03 2.39 16 6 C -0.21 -4.29 5.83 -102.66 -0.60 -4.89 16 7 C 0.01 0.29 8.26 -16.59 -0.14 0.15 16 8 N -0.27 -7.12 2.75 -61.35 -0.17 -7.29 16 9 C -0.40 -11.20 10.31 -14.88 -0.15 -11.35 16 10 H 0.11 3.24 8.06 -52.48 -0.42 2.82 16 11 C 0.03 0.70 5.46 -17.49 -0.10 0.61 16 12 N -0.84 -23.20 13.69 55.49 0.76 -22.44 16 13 Si 1.05 23.41 25.04 -169.99 -4.26 19.15 16 14 H -0.28 -5.56 6.51 56.52 0.37 -5.19 16 15 H -0.26 -5.77 6.81 56.52 0.39 -5.38 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.23 5.90 7.83 -155.30 -1.22 4.69 16 18 N -0.48 -11.63 10.38 -12.17 -0.13 -11.76 16 19 C 0.10 2.04 11.15 -17.49 -0.19 1.84 16 20 C -0.23 -3.98 10.10 -39.41 -0.40 -4.38 16 21 C -0.03 -0.56 10.22 -39.04 -0.40 -0.96 16 22 C -0.14 -3.14 6.37 -105.07 -0.67 -3.81 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.34 5.25 8.72 -39.29 -0.34 4.91 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.16 3.34 4.31 -52.49 -0.23 3.11 16 34 H 0.28 7.69 8.73 -40.82 -0.36 7.33 16 35 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -29.46 309.59 -8.85 -38.31 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.27 Total: 7.87 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.71 Total: -17.44 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.28 Total: -52.57 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.26 Total: 19.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.46 -8.85 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091020367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.166 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds