Wall clock time and date at job start Mon Mar 30 2020 06:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 N 1.46899 * 109.47206 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00266 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47299 * 180.02562 * 5 4 3 7 7 C 1.34290 * 126.52654 * 260.31520 * 6 5 4 8 8 N 1.37091 * 109.91339 * 180.13433 * 7 6 5 9 9 C 1.37288 * 125.02892 * 179.85247 * 8 7 6 10 10 H 1.08005 * 119.99855 * 203.58278 * 9 8 7 11 11 C 1.38864 * 120.00228 * 23.57735 * 9 8 7 12 12 N 1.31429 * 120.00398 * 196.46411 * 11 9 8 13 13 Si 1.86806 * 119.99715 * 16.46599 * 11 9 8 14 14 H 1.48500 * 109.46797 * 269.99645 * 13 11 9 15 15 H 1.48502 * 109.47138 * 29.99756 * 13 11 9 16 16 H 1.48492 * 109.47019 * 150.00042 * 13 11 9 17 17 C 1.37938 * 109.93772 * 359.58631 * 8 7 6 18 18 N 1.32540 * 133.18314 * 180.26597 * 17 8 7 19 19 C 1.31650 * 121.68401 * 179.97438 * 18 17 8 20 20 C 1.38623 * 121.55527 * 0.02562 * 19 18 17 21 21 C 1.38322 * 119.39484 * 359.97438 * 20 19 18 22 22 C 1.39602 * 118.03733 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.46607 * 299.99619 * 1 2 3 24 24 H 1.08995 * 109.47231 * 59.99472 * 1 2 3 25 25 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46989 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.47141 * 120.00964 * 2 1 3 28 28 H 1.08996 * 109.46957 * 60.00595 * 3 2 1 29 29 H 1.08995 * 109.47387 * 300.00432 * 3 2 1 30 30 H 1.00899 * 111.00078 * 303.95987 * 4 3 2 31 31 H 1.09001 * 109.47043 * 60.00142 * 5 4 3 32 32 H 1.09003 * 109.47032 * 299.99990 * 5 4 3 33 33 H 1.08001 * 125.04195 * 359.96117 * 7 6 5 34 34 H 0.97002 * 119.99724 * 355.20732 * 12 11 9 35 35 H 1.07999 * 119.21776 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.30222 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.98303 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0356 2.8138 0.0000 6 6 5.5421 2.7735 -0.0013 7 6 6.3468 2.9328 1.0619 8 7 7.6580 2.8351 0.6738 9 6 8.7388 2.9526 1.5122 10 1 9.7010 3.2415 1.1156 11 6 8.5949 2.7002 2.8701 12 7 9.5118 3.1135 3.7162 13 14 7.0981 1.7731 3.4943 14 1 6.0152 2.7382 3.8121 15 1 6.6288 0.8292 2.4483 16 1 7.4605 1.0150 4.7186 17 6 7.7305 2.5952 -0.6826 18 7 8.7429 2.4207 -1.5200 19 6 8.5487 2.2005 -2.8033 20 6 7.2738 2.1403 -3.3443 21 6 6.1773 2.3149 -2.5193 22 6 6.4076 2.5472 -1.1621 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.8710 0.9161 0.7804 31 1 3.6865 3.3366 0.8904 32 1 3.6857 3.3377 -0.8896 33 1 6.0109 3.1141 2.0722 34 1 10.3220 3.5331 3.3866 35 1 9.4028 2.0642 -3.4500 36 1 7.1378 1.9588 -4.4002 37 1 5.1727 2.2727 -2.9134 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091020367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:28 Heat of formation + Delta-G solvation = 42.002893 kcal Electronic energy + Delta-G solvation = -18896.983387 eV Core-core repulsion = 16059.472849 eV Total energy + Delta-G solvation = -2837.510538 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.33033 -38.86403 -37.71192 -35.53785 -34.26480 -33.10315 -31.45788 -30.19584 -27.84312 -26.10202 -24.46683 -24.04907 -22.82583 -22.18904 -21.06743 -19.80186 -17.96297 -17.85370 -17.02389 -16.49623 -16.36303 -15.92604 -15.56498 -15.40689 -15.05587 -14.66561 -14.59185 -14.05619 -13.76149 -13.57154 -13.35134 -13.02613 -12.94534 -12.65935 -12.36718 -12.23467 -12.03698 -11.81317 -11.69036 -11.52251 -11.19812 -10.92248 -10.06559 -9.50378 -9.27209 -9.20265 -8.83683 -6.48754 0.30241 0.67769 1.16922 1.36836 1.55646 1.81091 2.07862 2.30873 2.70607 3.23415 3.49706 3.79689 3.95479 4.04723 4.15757 4.23607 4.27839 4.36640 4.51697 4.56466 4.65984 4.78096 4.78908 4.88035 4.92559 4.97699 5.09568 5.20105 5.26280 5.33986 5.38103 5.48003 5.50373 5.59111 5.84046 6.07303 6.22314 6.29747 6.50436 6.76504 6.99328 7.50651 8.04781 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.007691 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.852523 B = 3639.520551 C = 5261.393333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.696 5.696 5 C 0.152 3.848 6 C -0.183 4.183 7 C -0.008 4.008 8 N -0.308 5.308 9 C -0.424 4.424 10 H 0.063 0.937 11 C -0.010 4.010 12 N -0.872 5.872 13 Si 1.093 2.907 14 H -0.239 1.239 15 H -0.263 1.263 16 H -0.276 1.276 17 C 0.199 3.801 18 N -0.538 5.538 19 C 0.108 3.892 20 C -0.212 4.212 21 C -0.024 4.024 22 C -0.161 4.161 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.337 0.663 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.270 0.730 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 -4.035 -8.651 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.327 5.327 5 C 0.023 3.977 6 C -0.191 4.191 7 C -0.140 4.140 8 N 0.025 4.975 9 C -0.552 4.552 10 H 0.081 0.919 11 C -0.215 4.215 12 N -0.501 5.501 13 Si 0.912 3.088 14 H -0.164 1.164 15 H -0.188 1.188 16 H -0.202 1.202 17 C -0.033 4.033 18 N -0.251 5.251 19 C -0.062 4.062 20 C -0.233 4.233 21 C -0.051 4.051 22 C -0.169 4.169 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.182 0.818 34 H 0.080 0.920 35 H 0.194 0.806 36 H 0.188 0.812 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.669 -4.478 -7.243 18.719 hybrid contribution 1.242 1.081 -0.416 1.698 sum -15.428 -3.398 -7.659 17.556 Atomic orbital electron populations 1.21695 0.94343 1.02184 1.02154 1.21484 0.96474 0.95833 1.02111 1.22063 0.86496 0.97586 1.00849 1.60535 1.07914 1.13817 1.50442 1.20012 0.86678 0.89805 1.01190 1.19988 0.95126 1.14019 0.90001 1.21878 0.82254 1.09565 1.00283 1.40328 1.05270 1.47757 1.04160 1.20745 0.90550 1.52202 0.91655 0.91902 1.27896 1.07007 0.95383 0.91240 1.70885 1.09227 1.33696 1.36290 0.83459 0.71734 0.77027 0.76533 1.16394 1.18770 1.20190 1.19009 0.91465 1.06393 0.86474 1.66237 1.36458 1.16947 1.05426 1.22913 0.98600 0.96140 0.88504 1.22071 0.92248 1.06914 1.02107 1.21149 1.00408 0.93630 0.89904 1.19785 0.92145 1.09359 0.95606 0.92524 0.92163 0.92067 0.91922 0.92552 0.94949 0.90528 0.84583 0.93922 0.89469 0.81768 0.91952 0.80636 0.81205 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -2.16 6.19 30.59 0.19 -1.97 16 3 C 0.06 1.18 5.69 86.30 0.49 1.67 16 4 N -0.70 -18.56 6.49 -517.95 -3.36 -21.92 16 5 C 0.15 4.43 6.22 85.56 0.53 4.96 16 6 C -0.18 -7.24 5.83 -18.59 -0.11 -7.35 16 7 C -0.01 -0.36 8.26 82.97 0.69 0.33 16 8 N -0.31 -16.64 2.75 -348.02 -0.96 -17.60 16 9 C -0.42 -25.29 10.31 83.99 0.87 -24.43 16 10 H 0.06 4.16 8.06 -2.91 -0.02 4.13 16 11 C -0.01 -0.54 5.46 84.90 0.46 -0.08 16 12 N -0.87 -50.94 13.69 21.65 0.30 -50.65 16 13 Si 1.09 47.91 25.04 68.60 1.72 49.63 16 14 H -0.24 -8.95 6.51 99.48 0.65 -8.30 16 15 H -0.26 -11.37 6.81 99.48 0.68 -10.69 16 16 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 17 C 0.20 10.23 7.83 133.79 1.05 11.28 16 18 N -0.54 -26.49 10.38 -192.41 -2.00 -28.48 16 19 C 0.11 3.97 11.15 84.81 0.95 4.91 16 20 C -0.21 -6.47 10.10 22.38 0.23 -6.25 16 21 C -0.02 -0.83 10.22 22.62 0.23 -0.59 16 22 C -0.16 -6.86 6.37 -20.16 -0.13 -6.99 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.34 9.47 8.72 -89.69 -0.78 8.69 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.17 6.93 4.31 -2.91 -0.01 6.92 16 34 H 0.27 15.93 8.73 -92.71 -0.81 15.12 16 35 H 0.18 5.00 8.06 -2.91 -0.02 4.98 16 36 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -69.67 309.59 2.01 -67.65 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.16 Total: 27.19 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 6.15 Total: -25.82 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -6.02 Total: -118.65 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.72 Total: 49.63 kcal Total: -69.67 2.01 -67.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091020367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.657 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds