Wall clock time and date at job start Mon Mar 30 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 N 1.46893 * 109.47196 * 120.00216 * 2 1 3 5 5 C 1.46905 * 111.00127 * 154.99938 * 4 2 1 6 6 C 1.50692 * 109.47570 * 179.97438 * 5 4 2 7 7 C 1.34286 * 126.53099 * 260.31658 * 6 5 4 8 8 N 1.37090 * 109.91800 * 180.13282 * 7 6 5 9 9 C 1.37294 * 125.03035 * 179.85642 * 8 7 6 10 10 H 1.08000 * 119.99431 * 201.26537 * 9 8 7 11 11 C 1.38859 * 120.00106 * 21.25791 * 9 8 7 12 12 N 1.31425 * 120.00065 * 11.27629 * 11 9 8 13 13 Si 1.86799 * 119.99854 * 191.26792 * 11 9 8 14 14 H 1.48499 * 109.47578 * 266.20780 * 13 11 9 15 15 H 1.48503 * 109.46899 * 26.21222 * 13 11 9 16 16 H 1.48506 * 109.46745 * 146.20661 * 13 11 9 17 17 C 1.37943 * 109.93834 * 359.58629 * 8 7 6 18 18 N 1.32531 * 133.18868 * 180.26512 * 17 8 7 19 19 C 1.31648 * 121.68672 * 179.97438 * 18 17 8 20 20 C 1.38623 * 121.55856 * 0.02562 * 19 18 17 21 21 C 1.38331 * 119.38722 * 359.97438 * 20 19 18 22 22 C 1.39591 * 118.04057 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47270 * 299.99333 * 1 2 3 24 24 H 1.08997 * 109.47635 * 59.99952 * 1 2 3 25 25 H 1.09002 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46726 * 240.00286 * 2 1 3 27 27 H 1.09001 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47067 * 299.99836 * 3 2 1 29 29 H 1.08995 * 109.46943 * 60.01006 * 3 2 1 30 30 H 1.00895 * 111.00269 * 278.94912 * 4 2 1 31 31 H 1.09003 * 109.46642 * 59.99822 * 5 4 2 32 32 H 1.08996 * 109.47118 * 300.00266 * 5 4 2 33 33 H 1.08001 * 125.03936 * 359.96688 * 7 6 5 34 34 H 0.97002 * 119.99954 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.22237 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.30607 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.97395 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 3.3670 -1.2355 0.9806 6 6 3.8351 -1.9365 2.2297 7 6 4.6639 -1.4397 3.1622 8 7 4.8635 -2.3674 4.1516 9 6 5.6591 -2.1837 5.2553 10 1 6.0383 -3.0384 5.7959 11 6 5.9764 -0.8991 5.6765 12 7 5.3462 0.1346 5.1650 13 14 7.2988 -0.6403 6.9702 14 1 6.6702 -0.5713 8.3138 15 1 8.2586 -1.7727 6.9303 16 1 8.0189 0.6289 6.6948 17 6 4.1419 -3.5105 3.8771 18 7 3.9969 -4.6656 4.5104 19 6 3.2321 -5.6249 4.0329 20 6 2.5393 -5.4751 2.8416 21 6 2.6513 -4.2909 2.1354 22 6 3.4670 -3.2878 2.6616 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.0020 -0.0816 2.0022 31 1 4.0523 -0.4219 0.7424 32 1 3.3431 -1.9444 0.1530 33 1 5.1094 -0.4562 3.1353 34 1 5.5676 1.0319 5.4595 35 1 3.1423 -6.5504 4.5822 36 1 1.9177 -6.2756 2.4682 37 1 2.1227 -4.1466 1.2048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091020649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:31 Heat of formation + Delta-G solvation = 61.330376 kcal Electronic energy + Delta-G solvation = -19019.038895 eV Core-core repulsion = 16182.366460 eV Total energy + Delta-G solvation = -2836.672435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30366 -37.14029 -36.73302 -33.57056 -32.15304 -30.93297 -29.15429 -27.96774 -26.97263 -25.58513 -23.46896 -22.30869 -21.18687 -20.52956 -18.79159 -17.77211 -15.99539 -15.49058 -15.18828 -15.00912 -14.72981 -14.31804 -13.83554 -13.71951 -13.36484 -13.09405 -12.29101 -12.19113 -12.12066 -12.05748 -11.85040 -11.75362 -11.47833 -11.26895 -11.11077 -10.98199 -10.68257 -10.61729 -10.52657 -10.33291 -9.38650 -9.04682 -8.27196 -7.88322 -7.37240 -6.95964 -6.65557 -4.32368 2.15797 2.45341 2.99742 3.03837 3.09802 3.74704 3.88095 4.46218 4.61402 4.88103 5.08488 5.16023 5.30747 5.49793 5.64838 5.71388 5.72983 5.81961 5.91280 5.97270 6.01408 6.03972 6.06335 6.25808 6.31159 6.32052 6.46063 6.66199 6.79682 6.88822 7.04101 7.14194 7.40246 7.43870 7.58963 7.82079 7.93078 7.95436 8.40317 8.87659 8.99340 9.49384 10.25186 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.007368 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.705848 B = 3799.375614 C = 5444.320441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 C -0.182 4.182 4 N -0.680 5.680 5 C 0.156 3.844 6 C -0.244 4.244 7 C 0.105 3.895 8 N -0.276 5.276 9 C -0.327 4.327 10 H 0.111 0.889 11 C 0.040 3.960 12 N -0.855 5.855 13 Si 0.942 3.058 14 H -0.272 1.272 15 H -0.263 1.263 16 H -0.276 1.276 17 C 0.231 3.769 18 N -0.485 5.485 19 C 0.097 3.903 20 C -0.231 4.231 21 C -0.037 4.037 22 C -0.136 4.136 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.343 0.657 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.174 0.826 34 H 0.279 0.721 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 0.768 -7.725 8.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 C -0.241 4.241 4 N -0.312 5.312 5 C 0.027 3.973 6 C -0.251 4.251 7 C -0.032 4.032 8 N 0.059 4.941 9 C -0.455 4.455 10 H 0.128 0.872 11 C -0.168 4.168 12 N -0.487 5.487 13 Si 0.766 3.234 14 H -0.197 1.197 15 H -0.188 1.188 16 H -0.201 1.201 17 C -0.004 4.004 18 N -0.196 5.196 19 C -0.072 4.072 20 C -0.254 4.254 21 C -0.063 4.063 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.191 0.809 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.867 0.443 -6.754 7.795 hybrid contribution 0.564 1.197 0.010 1.323 sum -3.303 1.640 -6.744 7.686 Atomic orbital electron populations 1.21753 0.95045 1.01975 1.00766 1.21542 0.95434 0.92138 0.94340 1.22524 1.01440 0.98312 1.01828 1.60728 1.25596 1.40030 1.04812 1.19872 0.87316 0.95618 0.94489 1.19582 1.09847 0.94702 1.01002 1.21919 0.99465 0.95599 0.86238 1.40114 1.29891 1.08180 1.15891 1.20024 1.25573 0.94435 1.05475 0.87163 1.25528 0.97883 0.94786 0.98564 1.69872 1.37274 0.99639 1.41922 0.85670 0.79687 0.78492 0.79542 1.19711 1.18758 1.20138 1.18579 0.97474 0.90101 0.94223 1.66193 1.19072 0.99960 1.34391 1.21985 0.94949 0.96066 0.94245 1.21468 1.06137 0.98806 0.98946 1.20627 0.95626 0.91768 0.98261 1.19415 1.01986 0.95576 0.97502 0.92927 0.93187 0.92197 0.91058 0.92704 0.92737 0.92511 0.83804 0.95686 0.91928 0.80944 0.91048 0.84381 0.86695 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.52 37.16 0.35 -1.28 16 2 C 0.08 1.00 3.20 -67.72 -0.22 0.78 16 3 C -0.18 -2.19 9.16 37.16 0.34 -1.85 16 4 N -0.68 -11.20 6.24 -107.99 -0.67 -11.87 16 5 C 0.16 2.77 6.01 -4.98 -0.03 2.74 16 6 C -0.24 -5.40 5.83 -102.67 -0.60 -6.00 16 7 C 0.10 2.57 9.81 -16.59 -0.16 2.41 16 8 N -0.28 -7.40 2.91 -61.35 -0.18 -7.57 16 9 C -0.33 -8.82 10.01 -14.88 -0.15 -8.97 16 10 H 0.11 2.97 7.85 -52.49 -0.41 2.56 16 11 C 0.04 1.01 5.35 -17.50 -0.09 0.91 16 12 N -0.85 -21.68 10.87 55.49 0.60 -21.08 16 13 Si 0.94 19.30 29.57 -169.99 -5.03 14.28 16 14 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 C 0.23 5.99 7.83 -155.30 -1.22 4.78 16 18 N -0.48 -11.97 10.38 -12.17 -0.13 -12.10 16 19 C 0.10 1.97 11.15 -17.49 -0.19 1.77 16 20 C -0.23 -4.31 10.10 -39.41 -0.40 -4.71 16 21 C -0.04 -0.74 10.22 -39.04 -0.40 -1.14 16 22 C -0.14 -3.18 6.37 -105.07 -0.67 -3.85 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.92 7.80 -51.93 -0.40 0.51 16 27 H 0.05 0.69 7.45 -51.93 -0.39 0.30 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.34 6.00 8.46 -39.29 -0.33 5.67 16 31 H 0.03 0.43 7.43 -51.93 -0.39 0.04 16 32 H 0.06 1.06 8.05 -51.93 -0.42 0.65 16 33 H 0.17 4.24 6.37 -52.49 -0.33 3.90 16 34 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -28.29 312.47 -9.32 -37.61 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.19 Total: 10.43 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.43 Total: -14.40 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.38 Total: -52.62 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.29 -9.32 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091020649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.940 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds