Wall clock time and date at job start Mon Mar 30 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 N 1.46893 * 109.47196 * 120.00216 * 2 1 3 5 5 C 1.46905 * 111.00127 * 154.99938 * 4 2 1 6 6 C 1.50692 * 109.47570 * 179.97438 * 5 4 2 7 7 C 1.34286 * 126.53099 * 260.31658 * 6 5 4 8 8 N 1.37090 * 109.91800 * 180.13282 * 7 6 5 9 9 C 1.37294 * 125.03035 * 179.85642 * 8 7 6 10 10 H 1.08000 * 119.99431 * 201.26537 * 9 8 7 11 11 C 1.38859 * 120.00106 * 21.25791 * 9 8 7 12 12 N 1.31425 * 120.00065 * 11.27629 * 11 9 8 13 13 Si 1.86799 * 119.99854 * 191.26792 * 11 9 8 14 14 H 1.48499 * 109.47578 * 266.20780 * 13 11 9 15 15 H 1.48503 * 109.46899 * 26.21222 * 13 11 9 16 16 H 1.48506 * 109.46745 * 146.20661 * 13 11 9 17 17 C 1.37943 * 109.93834 * 359.58629 * 8 7 6 18 18 N 1.32531 * 133.18868 * 180.26512 * 17 8 7 19 19 C 1.31648 * 121.68672 * 179.97438 * 18 17 8 20 20 C 1.38623 * 121.55856 * 0.02562 * 19 18 17 21 21 C 1.38331 * 119.38722 * 359.97438 * 20 19 18 22 22 C 1.39591 * 118.04057 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47270 * 299.99333 * 1 2 3 24 24 H 1.08997 * 109.47635 * 59.99952 * 1 2 3 25 25 H 1.09002 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46726 * 240.00286 * 2 1 3 27 27 H 1.09001 * 109.46719 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47067 * 299.99836 * 3 2 1 29 29 H 1.08995 * 109.46943 * 60.01006 * 3 2 1 30 30 H 1.00895 * 111.00269 * 278.94912 * 4 2 1 31 31 H 1.09003 * 109.46642 * 59.99822 * 5 4 2 32 32 H 1.08996 * 109.47118 * 300.00266 * 5 4 2 33 33 H 1.08001 * 125.03936 * 359.96688 * 7 6 5 34 34 H 0.97002 * 119.99954 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.22237 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.30607 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.97395 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 3.3670 -1.2355 0.9806 6 6 3.8351 -1.9365 2.2297 7 6 4.6639 -1.4397 3.1622 8 7 4.8635 -2.3674 4.1516 9 6 5.6591 -2.1837 5.2553 10 1 6.0383 -3.0384 5.7959 11 6 5.9764 -0.8991 5.6765 12 7 5.3462 0.1346 5.1650 13 14 7.2988 -0.6403 6.9702 14 1 6.6702 -0.5713 8.3138 15 1 8.2586 -1.7727 6.9303 16 1 8.0189 0.6289 6.6948 17 6 4.1419 -3.5105 3.8771 18 7 3.9969 -4.6656 4.5104 19 6 3.2321 -5.6249 4.0329 20 6 2.5393 -5.4751 2.8416 21 6 2.6513 -4.2909 2.1354 22 6 3.4670 -3.2878 2.6616 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.0020 -0.0816 2.0022 31 1 4.0523 -0.4219 0.7424 32 1 3.3431 -1.9444 0.1530 33 1 5.1094 -0.4562 3.1353 34 1 5.5676 1.0319 5.4595 35 1 3.1423 -6.5504 4.5822 36 1 1.9177 -6.2756 2.4682 37 1 2.1227 -4.1466 1.2048 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091020649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:31 Heat of formation + Delta-G solvation = 45.264772 kcal Electronic energy + Delta-G solvation = -19019.735552 eV Core-core repulsion = 16182.366460 eV Total energy + Delta-G solvation = -2837.369092 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04736 -38.68683 -38.10523 -35.32503 -33.81297 -32.39645 -30.81801 -29.61969 -27.92520 -27.30348 -25.05293 -24.01652 -22.89686 -21.61144 -20.50989 -19.56563 -17.78134 -17.15809 -16.65830 -16.45716 -16.24080 -15.70926 -15.56264 -15.14645 -14.82101 -14.26393 -13.98247 -13.71525 -13.54414 -13.49120 -13.24253 -13.15947 -12.96602 -12.89652 -12.56857 -12.30285 -12.13418 -12.04948 -11.99537 -11.63617 -11.14719 -10.80692 -9.95942 -9.19039 -9.10868 -8.78561 -8.47150 -6.28396 0.48968 0.79711 1.33206 1.36856 1.48869 2.03864 2.15123 2.72115 2.83647 3.36945 3.57663 4.03804 4.07713 4.15470 4.26158 4.31452 4.41002 4.49128 4.56277 4.71130 4.75865 4.83343 4.98938 5.02761 5.04356 5.07257 5.12655 5.13594 5.28997 5.32360 5.39094 5.49341 5.67900 5.74968 6.05424 6.26248 6.35928 6.50842 6.57242 7.03185 7.21965 7.69049 8.39005 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.007368 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.705848 B = 3799.375614 C = 5444.320441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.075 3.925 3 C -0.177 4.177 4 N -0.687 5.687 5 C 0.164 3.836 6 C -0.227 4.227 7 C 0.074 3.926 8 N -0.300 5.300 9 C -0.367 4.367 10 H 0.093 0.907 11 C 0.004 3.996 12 N -0.878 5.878 13 Si 1.010 2.990 14 H -0.268 1.268 15 H -0.263 1.263 16 H -0.262 1.262 17 C 0.189 3.811 18 N -0.528 5.528 19 C 0.098 3.902 20 C -0.217 4.217 21 C -0.035 4.035 22 C -0.160 4.160 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.334 0.666 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.162 0.838 34 H 0.285 0.715 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 0.117 -9.147 10.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.035 4.035 3 C -0.236 4.236 4 N -0.318 5.318 5 C 0.035 3.965 6 C -0.235 4.235 7 C -0.061 4.061 8 N 0.033 4.967 9 C -0.494 4.494 10 H 0.111 0.889 11 C -0.201 4.201 12 N -0.510 5.510 13 Si 0.831 3.169 14 H -0.193 1.193 15 H -0.188 1.188 16 H -0.186 1.186 17 C -0.044 4.044 18 N -0.242 5.242 19 C -0.071 4.071 20 C -0.238 4.238 21 C -0.061 4.061 22 C -0.169 4.169 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.179 0.821 34 H 0.095 0.905 35 H 0.194 0.806 36 H 0.183 0.817 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.183 -0.196 -8.209 9.710 hybrid contribution 0.813 1.232 0.360 1.520 sum -4.370 1.036 -7.849 9.043 Atomic orbital electron populations 1.21717 0.93812 1.01864 1.01652 1.21662 0.96295 0.92509 0.93020 1.22458 1.00772 0.97736 1.02627 1.60706 1.24431 1.40705 1.05914 1.19840 0.88247 0.95791 0.92648 1.20035 1.07819 0.94404 1.01234 1.21943 1.01395 0.95489 0.87309 1.40286 1.30884 1.09123 1.16373 1.20101 1.27640 0.94828 1.06842 0.88876 1.26432 0.99461 0.93870 1.00310 1.69949 1.38197 1.00050 1.42825 0.84689 0.76820 0.78714 0.76711 1.19301 1.18752 1.18577 1.19071 0.98831 0.90617 0.95841 1.66216 1.21301 1.00670 1.35964 1.22830 0.93086 0.96164 0.94981 1.21985 1.05028 0.99283 0.97540 1.21058 0.94539 0.91336 0.99212 1.19783 1.03056 0.96819 0.97239 0.93555 0.90794 0.92788 0.90197 0.93672 0.90527 0.93098 0.84869 0.95232 0.90512 0.82068 0.90451 0.80610 0.81738 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.52 71.98 0.69 -2.15 16 2 C 0.07 1.81 3.20 44.92 0.14 1.96 16 3 C -0.18 -3.96 9.16 71.98 0.66 -3.30 16 4 N -0.69 -21.96 6.24 -495.59 -3.09 -25.05 16 5 C 0.16 5.72 6.01 85.55 0.51 6.24 16 6 C -0.23 -10.25 5.83 -18.60 -0.11 -10.36 16 7 C 0.07 3.81 9.81 82.97 0.81 4.63 16 8 N -0.30 -16.98 2.91 -348.02 -1.01 -18.00 16 9 C -0.37 -20.96 10.01 83.99 0.84 -20.12 16 10 H 0.09 5.40 7.85 -2.91 -0.02 5.38 16 11 C 0.00 0.23 5.35 84.90 0.45 0.68 16 12 N -0.88 -46.27 10.87 21.65 0.24 -46.04 16 13 Si 1.01 40.63 29.57 68.60 2.03 42.65 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 17 C 0.19 10.15 7.83 133.79 1.05 11.20 16 18 N -0.53 -26.50 10.38 -192.41 -2.00 -28.50 16 19 C 0.10 3.80 11.15 84.81 0.95 4.75 16 20 C -0.22 -7.30 10.10 22.38 0.23 -7.07 16 21 C -0.04 -1.33 10.22 22.62 0.23 -1.10 16 22 C -0.16 -7.52 6.37 -20.15 -0.13 -7.65 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.83 7.80 -2.38 -0.02 1.81 16 27 H 0.04 1.09 7.45 -2.39 -0.02 1.07 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.33 11.73 8.46 -89.70 -0.76 10.97 16 31 H 0.03 1.00 7.43 -2.39 -0.02 0.98 16 32 H 0.08 2.46 8.05 -2.39 -0.02 2.44 16 33 H 0.16 8.45 6.37 -2.91 -0.02 8.43 16 34 H 0.29 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.18 5.23 8.06 -2.91 -0.02 5.20 16 36 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -65.05 312.47 2.79 -62.25 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.31 Total: 34.98 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 6.33 Total: -22.30 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -5.87 Total: -117.58 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -65.05 2.79 -62.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091020649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.518 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds