Wall clock time and date at job start Mon Mar 30 2020 07:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38251 * 119.99868 * 2 1 4 4 C 1.38220 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99842 * 0.02646 * 4 3 2 6 6 C 1.38211 * 120.00173 * 359.97205 * 5 4 3 7 7 C 1.38208 * 119.99547 * 179.72674 * 2 1 3 8 8 C 1.50696 * 120.00540 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47063 * 85.00223 * 8 7 2 10 10 N 1.46908 * 109.47200 * 180.02562 * 9 8 7 11 11 C 1.46896 * 110.99966 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46990 * 174.70137 * 11 10 9 13 13 C 1.50694 * 115.55174 * 65.16847 * 12 11 10 14 14 H 1.08005 * 119.99962 * 264.96225 * 13 12 11 15 15 C 1.37877 * 120.00050 * 84.96014 * 13 12 11 16 16 N 1.31514 * 120.00422 * 353.06741 * 15 13 12 17 17 Si 1.86814 * 119.99865 * 173.06091 * 15 13 12 18 18 H 1.48501 * 109.46549 * 90.00646 * 17 15 13 19 19 H 1.48493 * 109.46979 * 210.00052 * 17 15 13 20 20 H 1.48497 * 109.46904 * 330.00660 * 17 15 13 21 21 C 1.52999 * 117.49607 * 279.49436 * 12 11 10 22 22 C 1.53004 * 117.49558 * 210.83604 * 12 11 10 23 23 H 1.08997 * 109.47314 * 89.99972 * 1 2 3 24 24 H 1.08991 * 109.47281 * 210.00025 * 1 2 3 25 25 H 1.09001 * 109.46614 * 329.99958 * 1 2 3 26 26 H 1.07992 * 120.00453 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.99669 * 179.97438 * 4 3 2 28 28 H 1.08007 * 119.99680 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.99899 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47950 * 205.00526 * 8 7 2 31 31 H 1.09003 * 109.47405 * 325.00459 * 8 7 2 32 32 H 1.09002 * 109.47013 * 299.99929 * 9 8 7 33 33 H 1.08998 * 109.47375 * 60.00301 * 9 8 7 34 34 H 1.00900 * 110.99564 * 56.04098 * 10 9 8 35 35 H 1.09007 * 109.46863 * 294.69778 * 11 10 9 36 36 H 1.08999 * 109.47237 * 54.69528 * 11 10 9 37 37 H 0.96996 * 120.00532 * 185.04596 * 16 15 13 38 38 H 1.08998 * 117.50279 * 0.02562 * 21 12 11 39 39 H 1.08997 * 117.49785 * 145.02356 * 21 12 11 40 40 H 1.09002 * 117.49687 * 214.98131 * 22 12 11 41 41 H 1.09004 * 117.49901 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0125 9 6 1.0802 -2.8880 -1.4225 10 7 0.3451 -4.1600 -1.4158 11 6 -0.0216 -4.5632 -2.7799 12 6 -0.6661 -5.9504 -2.7458 13 6 -1.9837 -6.0372 -2.0196 14 1 -2.0100 -6.3381 -0.9826 15 6 -3.1556 -5.7324 -2.6789 16 7 -3.1155 -5.2362 -3.8962 17 14 -4.8007 -6.0246 -1.8431 18 1 -5.1975 -4.8063 -1.0923 19 1 -5.8296 -6.3308 -2.8691 20 1 -4.6823 -7.1685 -0.9037 21 6 0.2663 -7.1608 -2.6648 22 6 -0.4729 -6.8494 -3.9687 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3632 0.8900 0.5139 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1325 0.0001 28 1 5.3518 -0.0002 0.0005 29 1 4.1206 -2.1324 0.0001 30 1 2.0695 -3.2803 0.4505 31 1 0.5340 -2.3929 0.6017 32 1 0.4551 -2.1099 -1.8605 33 1 1.9906 -2.9973 -2.0117 34 1 -0.4699 -4.1035 -0.8236 35 1 -0.7286 -3.8441 -3.1937 36 1 0.8725 -4.5932 -3.4027 37 1 -3.9346 -4.9536 -4.3320 38 1 1.3388 -6.9688 -2.6355 39 1 -0.0735 -8.0200 -2.0866 40 1 -1.2987 -7.5039 -4.2476 41 1 0.1130 -6.4524 -4.7977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094183358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:16 Heat of formation + Delta-G solvation = 31.900107 kcal Electronic energy + Delta-G solvation = -18763.306966 eV Core-core repulsion = 16028.898682 eV Total energy + Delta-G solvation = -2734.408284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58942 -36.97928 -35.08295 -32.88223 -31.98351 -31.83046 -28.40629 -26.81476 -25.56653 -24.21783 -22.23718 -21.67068 -20.89269 -20.37332 -18.96089 -16.40372 -15.86706 -15.83717 -15.03325 -14.80422 -14.60655 -14.04746 -13.90749 -13.52906 -13.19224 -13.11796 -12.59565 -12.47027 -12.30433 -12.10415 -11.77899 -11.37570 -11.11407 -11.02079 -10.94445 -10.86405 -10.78266 -10.47744 -10.40017 -10.08823 -9.40558 -8.78071 -8.71626 -8.53661 -8.39048 -8.03086 -7.45456 -6.00700 -4.06704 1.36585 1.39253 3.28017 3.36294 3.40208 3.75540 4.40873 4.71136 4.82243 4.92127 5.00574 5.19301 5.27791 5.28471 5.37640 5.55005 5.57561 5.67750 5.72188 5.72813 5.86039 5.94326 6.11943 6.13106 6.18922 6.28781 6.43841 6.49046 6.51008 6.53106 6.62376 6.77281 6.88406 6.89089 6.96002 7.04231 7.20757 7.56236 7.59506 7.89869 8.03039 8.32326 8.52935 8.96612 9.58781 11.07197 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004351 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.266529 B = 6434.067777 C = 7153.603720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.127 4.127 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.073 4.073 8 C -0.082 4.082 9 C 0.067 3.933 10 N -0.682 5.682 11 C 0.107 3.893 12 C 0.051 3.949 13 C -0.493 4.493 14 H 0.060 0.940 15 C 0.070 3.930 16 N -0.880 5.880 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.200 4.200 22 C -0.163 4.163 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.346 0.654 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.259 0.741 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.248 11.083 6.778 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.131 4.131 7 C -0.074 4.074 8 C -0.119 4.119 9 C -0.063 4.063 10 N -0.313 5.313 11 C -0.022 4.022 12 C 0.050 3.950 13 C -0.531 4.531 14 H 0.078 0.922 15 C -0.133 4.133 16 N -0.517 5.517 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.238 4.238 22 C -0.201 4.201 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.677 10.696 6.597 16.490 hybrid contribution -1.582 0.607 0.025 1.694 sum 9.096 11.302 6.621 15.947 Atomic orbital electron populations 1.20893 0.91211 1.02839 1.02727 1.19830 0.96142 0.92642 0.99518 1.21000 0.94260 0.97365 1.01389 1.21064 0.94301 0.97880 1.01264 1.21091 0.99624 0.92615 1.01228 1.21090 0.93695 0.98136 1.00170 1.19845 0.93677 0.94822 0.99037 1.20650 1.00019 0.93122 0.98153 1.21822 0.98338 0.91369 0.94765 1.60435 1.29699 1.28197 1.12993 1.21417 0.95830 0.97742 0.87233 1.18731 0.93413 0.86253 0.96600 1.20467 0.89046 1.46581 0.96971 0.92201 1.25003 0.98769 0.94942 0.94554 1.69992 1.27668 1.41193 1.12880 0.86686 0.83986 0.78700 0.79213 1.20779 1.21294 1.19795 1.22865 0.96119 1.02597 1.02173 1.22536 1.01205 1.05721 0.90666 0.90926 0.90811 0.91896 0.86389 0.86492 0.86399 0.85997 0.90336 0.90776 0.96006 0.92011 0.83551 0.94716 0.94574 0.93146 0.91716 0.90929 0.90362 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.39 36.01 0.34 -1.05 16 2 C -0.08 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 5 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 6 C -0.11 -1.36 9.68 -39.58 -0.38 -1.75 16 7 C -0.07 -0.96 5.13 -104.63 -0.54 -1.49 16 8 C -0.08 -1.13 5.10 -27.88 -0.14 -1.27 16 9 C 0.07 1.09 5.66 -3.82 -0.02 1.07 16 10 N -0.68 -13.35 6.47 -113.77 -0.74 -14.09 16 11 C 0.11 2.41 5.54 -3.83 -0.02 2.39 16 12 C 0.05 1.25 1.56 -155.66 -0.24 1.01 16 13 C -0.49 -13.16 8.33 -34.44 -0.29 -13.45 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 16 N -0.88 -24.72 12.95 55.43 0.72 -24.00 16 17 Si 0.89 20.82 29.55 -169.99 -5.02 15.80 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.20 -4.53 9.96 -26.69 -0.27 -4.80 16 22 C -0.16 -3.93 9.46 -26.69 -0.25 -4.18 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.87 6.02 -51.93 -0.31 0.55 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 30 H 0.08 1.07 8.05 -51.93 -0.42 0.66 16 31 H 0.07 1.00 6.16 -51.93 -0.32 0.68 16 32 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.35 7.00 8.30 -39.29 -0.33 6.67 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -28.07 339.14 -10.46 -38.53 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.82 Total: 7.28 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -3.71 Total: -28.64 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.02 Total: -38.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.07 -10.46 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094183358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.431 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds