Wall clock time and date at job start Mon Mar 30 2020 07:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38251 * 119.99868 * 2 1 4 4 C 1.38220 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99842 * 0.02646 * 4 3 2 6 6 C 1.38211 * 120.00173 * 359.97205 * 5 4 3 7 7 C 1.38208 * 119.99547 * 179.72674 * 2 1 3 8 8 C 1.50696 * 120.00540 * 359.97438 * 7 2 1 9 9 C 1.53003 * 109.47063 * 85.00223 * 8 7 2 10 10 N 1.46908 * 109.47200 * 180.02562 * 9 8 7 11 11 C 1.46896 * 110.99966 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46990 * 174.70137 * 11 10 9 13 13 C 1.50694 * 115.55174 * 65.16847 * 12 11 10 14 14 H 1.08005 * 119.99962 * 264.96225 * 13 12 11 15 15 C 1.37877 * 120.00050 * 84.96014 * 13 12 11 16 16 N 1.31514 * 120.00422 * 353.06741 * 15 13 12 17 17 Si 1.86814 * 119.99865 * 173.06091 * 15 13 12 18 18 H 1.48501 * 109.46549 * 90.00646 * 17 15 13 19 19 H 1.48493 * 109.46979 * 210.00052 * 17 15 13 20 20 H 1.48497 * 109.46904 * 330.00660 * 17 15 13 21 21 C 1.52999 * 117.49607 * 279.49436 * 12 11 10 22 22 C 1.53004 * 117.49558 * 210.83604 * 12 11 10 23 23 H 1.08997 * 109.47314 * 89.99972 * 1 2 3 24 24 H 1.08991 * 109.47281 * 210.00025 * 1 2 3 25 25 H 1.09001 * 109.46614 * 329.99958 * 1 2 3 26 26 H 1.07992 * 120.00453 * 0.02562 * 3 2 1 27 27 H 1.07995 * 119.99669 * 179.97438 * 4 3 2 28 28 H 1.08007 * 119.99680 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.99899 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.47950 * 205.00526 * 8 7 2 31 31 H 1.09003 * 109.47405 * 325.00459 * 8 7 2 32 32 H 1.09002 * 109.47013 * 299.99929 * 9 8 7 33 33 H 1.08998 * 109.47375 * 60.00301 * 9 8 7 34 34 H 1.00900 * 110.99564 * 56.04098 * 10 9 8 35 35 H 1.09007 * 109.46863 * 294.69778 * 11 10 9 36 36 H 1.08999 * 109.47237 * 54.69528 * 11 10 9 37 37 H 0.96996 * 120.00532 * 185.04596 * 16 15 13 38 38 H 1.08998 * 117.50279 * 0.02562 * 21 12 11 39 39 H 1.08997 * 117.49785 * 145.02356 * 21 12 11 40 40 H 1.09002 * 117.49687 * 214.98131 * 22 12 11 41 41 H 1.09004 * 117.49901 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0125 9 6 1.0802 -2.8880 -1.4225 10 7 0.3451 -4.1600 -1.4158 11 6 -0.0216 -4.5632 -2.7799 12 6 -0.6661 -5.9504 -2.7458 13 6 -1.9837 -6.0372 -2.0196 14 1 -2.0100 -6.3381 -0.9826 15 6 -3.1556 -5.7324 -2.6789 16 7 -3.1155 -5.2362 -3.8962 17 14 -4.8007 -6.0246 -1.8431 18 1 -5.1975 -4.8063 -1.0923 19 1 -5.8296 -6.3308 -2.8691 20 1 -4.6823 -7.1685 -0.9037 21 6 0.2663 -7.1608 -2.6648 22 6 -0.4729 -6.8494 -3.9687 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3632 0.8900 0.5139 26 1 1.6584 2.1326 0.0004 27 1 4.1205 2.1325 0.0001 28 1 5.3518 -0.0002 0.0005 29 1 4.1206 -2.1324 0.0001 30 1 2.0695 -3.2803 0.4505 31 1 0.5340 -2.3929 0.6017 32 1 0.4551 -2.1099 -1.8605 33 1 1.9906 -2.9973 -2.0117 34 1 -0.4699 -4.1035 -0.8236 35 1 -0.7286 -3.8441 -3.1937 36 1 0.8725 -4.5932 -3.4027 37 1 -3.9346 -4.9536 -4.3320 38 1 1.3388 -6.9688 -2.6355 39 1 -0.0735 -8.0200 -2.0866 40 1 -1.2987 -7.5039 -4.2476 41 1 0.1130 -6.4524 -4.7977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094183358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:15 Heat of formation + Delta-G solvation = 18.325140 kcal Electronic energy + Delta-G solvation = -18763.895621 eV Core-core repulsion = 16028.898682 eV Total energy + Delta-G solvation = -2734.996939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49643 -38.77328 -36.51334 -34.03454 -33.85515 -32.96269 -29.60975 -27.84318 -27.47315 -25.75820 -23.47819 -22.83176 -22.63659 -21.42037 -20.82123 -17.91945 -17.22054 -16.97051 -16.59361 -16.23426 -15.95981 -15.69530 -15.25598 -14.70177 -14.64997 -14.11605 -13.98887 -13.74119 -13.47110 -13.24718 -13.08851 -12.98120 -12.90791 -12.82850 -12.37568 -12.30206 -12.13179 -11.97770 -11.72586 -11.59104 -11.27948 -10.70329 -10.39868 -9.93457 -9.65824 -9.43606 -9.11649 -8.07048 -6.18364 0.47725 0.51936 1.41235 1.44722 1.53647 2.44109 2.86231 3.20925 3.30902 3.72772 3.92505 4.03201 4.11481 4.22412 4.27035 4.36126 4.41368 4.45739 4.62696 4.67203 4.68047 4.74823 4.78781 4.86773 4.95899 4.97974 4.99823 5.06854 5.10648 5.15090 5.24816 5.29312 5.39840 5.63322 5.65297 5.67406 5.69437 5.81355 5.83767 6.18157 6.35111 6.49583 6.66243 6.90805 7.49820 9.00401 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.004351 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.266529 B = 6434.067777 C = 7153.603720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C -0.130 4.130 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.124 4.124 7 C -0.093 4.093 8 C -0.070 4.070 9 C 0.073 3.927 10 N -0.678 5.678 11 C 0.121 3.879 12 C 0.027 3.973 13 C -0.503 4.503 14 H 0.054 0.946 15 C 0.026 3.974 16 N -0.909 5.909 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.270 1.270 21 C -0.177 4.177 22 C -0.169 4.169 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.014 0.986 33 H 0.061 0.939 34 H 0.341 0.659 35 H 0.003 0.997 36 H 0.043 0.957 37 H 0.258 0.742 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 12.002 7.841 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.142 4.142 7 C -0.093 4.093 8 C -0.107 4.107 9 C -0.056 4.056 10 N -0.309 5.309 11 C -0.009 4.009 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.072 0.928 15 C -0.174 4.174 16 N -0.547 5.547 17 Si 0.773 3.227 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.215 4.215 22 C -0.208 4.208 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.762 11.614 7.675 18.224 hybrid contribution -1.843 0.356 -0.303 1.901 sum 9.919 11.970 7.372 17.205 Atomic orbital electron populations 1.20878 0.91078 1.03376 1.02205 1.20013 0.96517 0.93118 1.00061 1.21293 0.94937 0.97623 1.00952 1.21443 0.94215 0.98993 0.99865 1.21421 1.00958 0.92219 1.00314 1.21293 0.93435 0.99227 1.00278 1.19832 0.94257 0.94432 1.00799 1.20485 1.00237 0.93912 0.96097 1.21824 0.97496 0.89584 0.96731 1.60429 1.29237 1.30125 1.11094 1.21150 0.95031 0.95954 0.88747 1.18891 0.93705 0.87796 0.97022 1.20689 0.90314 1.46208 0.96859 0.92794 1.25656 1.01836 0.94770 0.95127 1.70102 1.28307 1.42209 1.14120 0.85730 0.80044 0.78740 0.78195 1.20019 1.21443 1.19438 1.22840 0.96818 1.01332 1.00470 1.22463 1.01169 1.05681 0.91451 0.91932 0.91515 0.90163 0.84577 0.83855 0.84041 0.85254 0.90190 0.90765 0.96822 0.92008 0.84108 0.97905 0.93854 0.93293 0.89687 0.90888 0.92501 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.39 71.24 0.67 -2.02 16 2 C -0.10 -2.33 5.88 -19.87 -0.12 -2.45 16 3 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 4 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 5 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 6 C -0.12 -2.82 9.68 22.27 0.22 -2.60 16 7 C -0.09 -2.34 5.13 -19.87 -0.10 -2.44 16 8 C -0.07 -1.90 5.10 29.85 0.15 -1.74 16 9 C 0.07 2.38 5.66 86.30 0.49 2.87 16 10 N -0.68 -26.50 6.47 -513.87 -3.32 -29.82 16 11 C 0.12 5.48 5.54 86.30 0.48 5.96 16 12 C 0.03 1.31 1.56 -52.93 -0.08 1.23 16 13 C -0.50 -26.98 8.33 25.60 0.21 -26.77 16 14 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 15 C 0.03 1.42 5.39 84.65 0.46 1.87 16 16 N -0.91 -51.78 12.95 21.45 0.28 -51.50 16 17 Si 0.95 42.93 29.55 68.60 2.03 44.95 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.18 -7.83 9.96 30.62 0.30 -7.53 16 22 C -0.17 -8.16 9.46 30.62 0.29 -7.87 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.57 6.02 -2.39 -0.01 1.55 16 25 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 26 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 27 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 28 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 31 H 0.07 1.99 6.16 -2.39 -0.01 1.97 16 32 H 0.01 0.47 7.92 -2.39 -0.02 0.45 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.34 13.90 8.30 -89.69 -0.74 13.16 16 35 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.04 1.87 8.08 -2.39 -0.02 1.86 16 37 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 38 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -59.06 339.14 2.86 -56.20 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.25 Total: 28.55 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 3.63 Total: -48.38 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.05 Total: -81.33 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -59.06 2.86 -56.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094183358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.527 kcal (2) G-P(sol) polarization free energy of solvation -59.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds