Wall clock time and date at job start Mon Mar 30 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99896 * 2 1 4 4 C 1.50704 * 109.46995 * 270.00122 * 3 2 1 5 5 H 1.07997 * 120.00282 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99809 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99946 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00312 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47109 * 89.99717 * 8 6 4 10 10 H 1.48498 * 109.47364 * 209.99763 * 8 6 4 11 11 H 1.48500 * 109.46796 * 330.00099 * 8 6 4 12 12 C 1.34779 * 120.00407 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00165 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99304 * 359.97438 * 12 2 1 15 15 H 1.08990 * 115.56619 * 325.68631 * 14 12 2 16 16 C 1.53004 * 117.49743 * 111.38269 * 14 12 2 17 17 C 1.53004 * 60.00248 * 107.48519 * 16 14 12 18 18 H 1.08997 * 117.52084 * 252.52242 * 17 16 14 19 19 C 1.50696 * 117.50227 * 107.48818 * 17 16 14 20 20 C 1.38230 * 120.00309 * 171.38013 * 19 17 16 21 21 C 1.38235 * 120.00326 * 179.97438 * 20 19 17 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00061 * 0.07178 * 22 21 20 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 22 21 25 25 H 1.09002 * 109.46841 * 269.99821 * 1 2 3 26 26 H 1.08997 * 109.47643 * 29.99761 * 1 2 3 27 27 H 1.09003 * 109.47211 * 150.00198 * 1 2 3 28 28 H 1.08997 * 109.47161 * 30.00234 * 3 2 1 29 29 H 1.09002 * 109.47355 * 150.00511 * 3 2 1 30 30 H 0.96998 * 120.00237 * 180.02562 * 7 6 4 31 31 H 1.09003 * 117.49982 * 359.97438 * 16 14 12 32 32 H 1.09004 * 117.49872 * 214.96959 * 16 14 12 33 33 H 1.08000 * 120.00376 * 359.97438 * 20 19 17 34 34 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 35 35 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.00107 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.00147 * 180.10835 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3446 3.2579 -2.9127 8 14 3.7328 3.9293 -0.2530 9 1 5.1064 3.5082 0.1228 10 1 3.7477 5.3561 -0.6645 11 1 2.8270 3.7592 0.9113 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 1 0.4472 -2.4736 0.5541 16 6 1.4602 -3.3312 -1.2645 17 6 2.2076 -3.7627 -0.0011 18 1 3.2934 -3.6676 -0.0010 19 6 1.6581 -4.9382 0.7652 20 6 2.3838 -5.4842 1.8073 21 6 1.8795 -6.5621 2.5106 22 6 0.6492 -7.0937 2.1721 23 6 -0.0762 -6.5483 1.1293 24 6 0.4277 -5.4698 0.4266 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 3.8214 4.0838 -3.0900 31 1 2.0541 -2.9521 -2.0962 32 1 0.5710 -3.8977 -1.5414 33 1 3.3448 -5.0686 2.0722 34 1 2.4484 -6.9915 3.3220 35 1 0.2553 -7.9361 2.7213 36 1 -1.0373 -6.9639 0.8645 37 1 -0.1398 -5.0426 -0.3869 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109028423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:27 Heat of formation + Delta-G solvation = 18.176769 kcal Electronic energy + Delta-G solvation = -18499.163277 eV Core-core repulsion = 15628.326810 eV Total energy + Delta-G solvation = -2870.836467 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03821 -38.85338 -36.25541 -34.82408 -32.51386 -31.06503 -30.64766 -28.64055 -26.02523 -24.37196 -23.75807 -22.50683 -21.60165 -20.29908 -18.33955 -17.41462 -16.92894 -16.43709 -15.55333 -15.13010 -14.89663 -14.68362 -14.21286 -13.82799 -13.51873 -13.34350 -12.97449 -12.54267 -12.38417 -12.21019 -11.93548 -11.84607 -11.48878 -11.35531 -11.04570 -10.92202 -10.65955 -10.49660 -10.32078 -10.11751 -9.54105 -9.09082 -9.01910 -8.60419 -8.58667 -7.69580 -6.08618 -4.07412 1.20061 1.29061 3.09246 3.29537 3.35491 3.37408 3.56137 3.85304 4.19971 4.39866 4.58542 4.75754 4.85617 4.93026 4.99648 5.02918 5.17484 5.24903 5.35390 5.38793 5.50951 5.65098 5.74557 5.87392 5.88365 5.93858 6.09183 6.15267 6.19169 6.38264 6.39960 6.59748 6.70396 6.88869 6.94533 7.34402 7.61002 8.25386 8.47107 8.92796 8.99201 9.51671 11.04778 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.004051 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.383621 B = 6909.503232 C = 7042.592875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.594 5.594 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.536 3.464 13 O -0.541 6.541 14 C -0.169 4.169 15 H 0.120 0.880 16 C -0.145 4.145 17 C -0.093 4.093 18 H 0.127 0.873 19 C -0.044 4.044 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.122 4.122 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.265 0.735 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.619 -17.805 9.094 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.325 5.325 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.322 3.678 13 O -0.418 6.418 14 C -0.190 4.190 15 H 0.138 0.862 16 C -0.182 4.182 17 C -0.112 4.112 18 H 0.144 0.856 19 C -0.044 4.044 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.139 4.139 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.900 -17.608 8.987 21.289 hybrid contribution 0.198 0.734 0.591 0.963 sum -7.702 -16.873 9.578 20.875 Atomic orbital electron populations 1.21661 0.80888 1.03043 1.00374 1.47730 1.06336 1.06862 1.71569 1.19679 0.92464 0.80000 0.98394 1.21334 1.36991 1.07146 0.91258 0.90752 1.24862 0.95237 0.97345 0.95604 1.69897 1.41498 1.23578 1.18653 0.86840 0.80142 0.79732 0.82920 1.19887 1.21043 1.19067 1.19381 0.87360 0.84072 0.76984 1.90654 1.13803 1.87053 1.50315 1.22410 1.01598 0.90615 1.04408 0.86240 1.23100 1.02688 1.00976 0.91416 1.21097 0.99533 0.91265 0.99289 0.85560 1.19217 0.94335 0.95316 0.95534 1.21053 1.00247 0.96297 0.95292 1.21136 0.96141 0.96598 0.99810 1.21129 0.95321 1.00328 0.97979 1.21111 0.99816 0.96604 0.96158 1.21107 0.95723 0.96878 1.00227 0.93759 0.90580 0.91941 0.95179 0.94558 0.92556 0.87493 0.87796 0.85783 0.86113 0.86329 0.86161 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.01 59.85 0.60 1.92 16 2 N -0.59 -12.54 2.86 -182.95 -0.52 -13.06 16 3 C 0.22 5.37 4.23 -5.19 -0.02 5.34 16 4 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 8 Si 0.88 21.75 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.54 11.18 7.46 -10.98 -0.08 11.10 16 13 O -0.54 -13.53 15.84 5.56 0.09 -13.44 16 14 C -0.17 -2.58 4.43 -91.76 -0.41 -2.99 16 15 H 0.12 1.56 7.26 -51.93 -0.38 1.18 16 16 C -0.14 -1.93 9.56 -26.73 -0.26 -2.19 16 17 C -0.09 -1.31 5.55 -91.77 -0.51 -1.82 16 18 H 0.13 1.99 7.67 -51.93 -0.40 1.59 16 19 C -0.04 -0.54 5.61 -104.63 -0.59 -1.13 16 20 C -0.11 -1.28 9.74 -39.59 -0.39 -1.67 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.29 9.30 -39.58 -0.37 -1.66 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16 28 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 29 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.10 1.08 6.18 -51.93 -0.32 0.76 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 1.14 6.02 -52.49 -0.32 0.83 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -34.26 313.01 -8.29 -42.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.03 Total: 0.71 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -3.65 Total: -11.48 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.25 Total: -40.15 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.26 -8.29 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.733 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds