Wall clock time and date at job start Mon Mar 30 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99896 * 2 1 4 4 C 1.50704 * 109.46995 * 270.00122 * 3 2 1 5 5 H 1.07997 * 120.00282 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99809 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99946 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00312 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47109 * 89.99717 * 8 6 4 10 10 H 1.48498 * 109.47364 * 209.99763 * 8 6 4 11 11 H 1.48500 * 109.46796 * 330.00099 * 8 6 4 12 12 C 1.34779 * 120.00407 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00165 * 179.97438 * 12 2 1 14 14 C 1.50701 * 119.99304 * 359.97438 * 12 2 1 15 15 H 1.08990 * 115.56619 * 325.68631 * 14 12 2 16 16 C 1.53004 * 117.49743 * 111.38269 * 14 12 2 17 17 C 1.53004 * 60.00248 * 107.48519 * 16 14 12 18 18 H 1.08997 * 117.52084 * 252.52242 * 17 16 14 19 19 C 1.50696 * 117.50227 * 107.48818 * 17 16 14 20 20 C 1.38230 * 120.00309 * 171.38013 * 19 17 16 21 21 C 1.38235 * 120.00326 * 179.97438 * 20 19 17 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00061 * 0.07178 * 22 21 20 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 22 21 25 25 H 1.09002 * 109.46841 * 269.99821 * 1 2 3 26 26 H 1.08997 * 109.47643 * 29.99761 * 1 2 3 27 27 H 1.09003 * 109.47211 * 150.00198 * 1 2 3 28 28 H 1.08997 * 109.47161 * 30.00234 * 3 2 1 29 29 H 1.09002 * 109.47355 * 150.00511 * 3 2 1 30 30 H 0.96998 * 120.00237 * 180.02562 * 7 6 4 31 31 H 1.09003 * 117.49982 * 359.97438 * 16 14 12 32 32 H 1.09004 * 117.49872 * 214.96959 * 16 14 12 33 33 H 1.08000 * 120.00376 * 359.97438 * 20 19 17 34 34 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 35 35 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.00107 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.00147 * 180.10835 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3446 3.2579 -2.9127 8 14 3.7328 3.9293 -0.2530 9 1 5.1064 3.5082 0.1228 10 1 3.7477 5.3561 -0.6645 11 1 2.8270 3.7592 0.9113 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 1 0.4472 -2.4736 0.5541 16 6 1.4602 -3.3312 -1.2645 17 6 2.2076 -3.7627 -0.0011 18 1 3.2934 -3.6676 -0.0010 19 6 1.6581 -4.9382 0.7652 20 6 2.3838 -5.4842 1.8073 21 6 1.8795 -6.5621 2.5106 22 6 0.6492 -7.0937 2.1721 23 6 -0.0762 -6.5483 1.1293 24 6 0.4277 -5.4698 0.4266 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1385 0.5138 30 1 3.8214 4.0838 -3.0900 31 1 2.0541 -2.9521 -2.0962 32 1 0.5710 -3.8977 -1.5414 33 1 3.3448 -5.0686 2.0722 34 1 2.4484 -6.9915 3.3220 35 1 0.2553 -7.9361 2.7213 36 1 -1.0373 -6.9639 0.8645 37 1 -0.1398 -5.0426 -0.3869 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109028423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:26 Heat of formation + Delta-G solvation = -2.905044 kcal Electronic energy + Delta-G solvation = -18500.077453 eV Core-core repulsion = 15628.326810 eV Total energy + Delta-G solvation = -2871.750643 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27887 -40.01814 -37.46506 -36.54604 -34.69788 -31.83106 -31.55646 -30.53849 -27.46913 -25.98115 -24.73246 -23.51746 -23.10687 -21.27593 -19.86037 -19.16510 -18.50390 -17.58182 -17.21649 -16.44651 -16.07141 -15.85817 -15.68218 -15.01947 -14.99895 -14.46644 -14.20780 -13.84754 -13.78836 -13.68129 -13.53135 -13.21831 -12.85444 -12.80601 -12.47373 -12.17910 -12.08215 -11.90345 -11.77414 -11.60174 -11.40395 -10.85599 -10.72974 -9.78365 -9.48655 -9.42051 -8.36361 -6.41841 0.40171 0.53987 1.31042 1.35309 1.43899 1.59553 2.23296 2.29263 2.73408 2.97742 3.12185 3.48407 3.70746 3.84447 3.97578 4.07975 4.19492 4.27491 4.33096 4.42187 4.62877 4.63530 4.69806 4.73517 4.80545 4.90454 4.94687 4.98516 5.06715 5.16933 5.21886 5.42716 5.59069 5.62619 5.66480 5.75883 6.15211 6.21141 6.59093 6.65245 7.18289 7.36938 8.80630 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.004051 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.383621 B = 6909.503232 C = 7042.592875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.603 5.603 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.028 0.972 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.238 1.238 12 C 0.523 3.477 13 O -0.597 6.597 14 C -0.170 4.170 15 H 0.153 0.847 16 C -0.131 4.131 17 C -0.088 4.088 18 H 0.096 0.904 19 C -0.061 4.061 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.017 0.983 30 H 0.269 0.731 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -19.238 11.131 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.047 0.953 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.161 1.161 12 C 0.312 3.688 13 O -0.479 6.479 14 C -0.191 4.191 15 H 0.170 0.830 16 C -0.168 4.168 17 C -0.107 4.107 18 H 0.114 0.886 19 C -0.061 4.061 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.142 4.142 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.434 -19.058 11.031 24.367 hybrid contribution 0.958 1.072 -0.108 1.441 sum -9.476 -17.986 10.923 23.079 Atomic orbital electron populations 1.21980 0.77449 1.04116 1.02905 1.47874 1.08581 1.05696 1.71186 1.19363 0.92703 0.82484 0.95442 1.21552 1.36991 1.06814 0.92315 0.95327 1.25867 0.95226 0.98922 0.98712 1.70046 1.42627 1.24513 1.21269 0.85699 0.79525 0.77819 0.79815 1.20261 1.19736 1.16110 1.20390 0.87144 0.85794 0.75476 1.90614 1.16493 1.88056 1.52747 1.22329 1.02352 0.87848 1.06534 0.82956 1.23206 1.03612 0.99935 0.90037 1.20973 0.98064 0.91605 1.00073 0.88559 1.19118 0.95605 0.95237 0.96177 1.21170 1.00361 0.97426 0.96016 1.21394 0.96826 0.95969 1.00026 1.21523 0.94698 1.00608 0.97782 1.21478 1.00798 0.95866 0.95589 1.21304 0.94962 0.97216 1.00753 0.90320 0.91392 0.89120 0.92971 0.96519 0.92185 0.89914 0.83767 0.86649 0.84316 0.83657 0.83408 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.26 10.01 127.77 1.28 3.54 16 2 N -0.60 -25.41 2.86 -851.13 -2.43 -27.85 16 3 C 0.22 11.17 4.23 85.63 0.36 11.54 16 4 C -0.54 -32.41 9.94 25.60 0.25 -32.15 16 5 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 6 C 0.01 0.65 5.47 84.65 0.46 1.11 16 7 N -0.94 -60.47 13.96 21.45 0.30 -60.17 16 8 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 12 C 0.52 22.28 7.46 87.66 0.65 22.93 16 13 O -0.60 -31.53 15.84 -3.01 -0.05 -31.58 16 14 C -0.17 -5.02 4.43 -11.53 -0.05 -5.07 16 15 H 0.15 3.47 7.26 -2.39 -0.02 3.45 16 16 C -0.13 -3.38 9.56 30.60 0.29 -3.08 16 17 C -0.09 -2.50 5.55 -11.54 -0.06 -2.56 16 18 H 0.10 3.27 7.67 -2.39 -0.02 3.26 16 19 C -0.06 -1.42 5.61 -19.87 -0.11 -1.54 16 20 C -0.13 -2.97 9.74 22.27 0.22 -2.75 16 21 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 23 C -0.12 -1.78 10.05 22.27 0.22 -1.56 16 24 C -0.12 -2.26 9.30 22.27 0.21 -2.05 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 27 H 0.09 2.13 6.64 -2.39 -0.02 2.11 16 28 H 0.05 2.38 7.13 -2.39 -0.02 2.37 16 29 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 30 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.14 2.52 6.18 -2.38 -0.01 2.51 16 33 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 36 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.14 1.98 6.02 -2.91 -0.02 1.96 16 Total: -1.00 -79.31 313.01 4.88 -74.43 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.00 Total: 13.44 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.17 Total: -15.30 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -2.13 Total: -88.01 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.05 Total: -31.58 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -79.31 4.88 -74.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.522 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds