Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50703 * 109.47077 * 269.99336 * 3 2 1 5 5 H 1.08005 * 119.99703 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00292 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00314 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99869 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47168 * 90.00127 * 8 6 4 10 10 H 1.48497 * 109.46932 * 210.00102 * 8 6 4 11 11 H 1.48501 * 109.47042 * 330.00023 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00135 * 180.27973 * 12 2 1 14 14 C 1.50706 * 119.99766 * 0.02562 * 12 2 1 15 15 H 1.08996 * 115.55231 * 34.41503 * 14 12 2 16 16 C 1.52998 * 117.49548 * 248.74267 * 14 12 2 17 17 C 1.52999 * 117.49514 * 180.08498 * 14 12 2 18 18 H 1.08997 * 117.50050 * 359.97438 * 17 14 12 19 19 C 1.50695 * 117.49974 * 215.00384 * 17 14 12 20 20 C 1.38245 * 119.99898 * 299.72829 * 19 17 14 21 21 C 1.38236 * 119.99621 * 179.78472 * 20 19 17 22 22 C 1.38224 * 120.00362 * 0.44184 * 21 20 19 23 23 C 1.38238 * 120.00235 * 359.81052 * 22 21 20 24 24 C 1.38232 * 119.99614 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 26 26 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 27 27 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 28 28 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 29 29 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 30 30 H 0.96999 * 120.00320 * 179.97438 * 7 6 4 31 31 H 1.08992 * 117.50074 * 0.02562 * 16 14 12 32 32 H 1.09001 * 117.49625 * 145.02711 * 16 14 12 33 33 H 1.07997 * 119.99743 * 359.97438 * 20 19 17 34 34 H 1.08002 * 119.99214 * 180.27354 * 21 20 19 35 35 H 1.07999 * 120.00017 * 179.83215 * 22 21 20 36 36 H 1.08000 * 120.00259 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.99902 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.3458 3.2571 -2.9127 8 14 3.7351 3.9280 -0.2530 9 1 5.1083 3.5058 0.1225 10 1 3.7509 5.3547 -0.6645 11 1 2.8293 3.7586 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0056 14 6 1.3853 -2.4723 0.0005 15 1 0.4479 -2.4739 -0.5556 16 6 1.4577 -3.3298 1.2656 17 6 2.2074 -3.7627 0.0031 18 1 3.2932 -3.6677 0.0044 19 6 1.6591 -4.9386 -0.7634 20 6 0.4311 -5.4742 -0.4223 21 6 -0.0738 -6.5501 -1.1284 22 6 0.6532 -7.0961 -2.1695 23 6 1.8835 -6.5638 -2.5073 24 6 2.3864 -5.4852 -1.8042 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1499 1.1384 0.5139 30 1 3.8227 4.0830 -3.0900 31 1 2.0499 -2.9498 2.0979 32 1 0.5680 -3.8959 1.5414 33 1 -0.1350 -5.0502 0.3938 34 1 -1.0351 -6.9657 -0.8646 35 1 0.2599 -7.9383 -2.7193 36 1 2.4517 -6.9907 -3.3205 37 1 3.3474 -5.0690 -2.0683 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109028424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = 19.524304 kcal Electronic energy + Delta-G solvation = -18519.503137 eV Core-core repulsion = 15648.725103 eV Total energy + Delta-G solvation = -2870.778034 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02899 -38.83742 -36.26034 -34.82580 -32.51135 -31.02437 -30.62380 -28.64498 -26.01928 -24.38271 -23.78057 -22.48187 -21.58338 -20.29770 -18.34716 -17.41036 -16.92713 -16.44529 -15.55968 -15.10631 -14.86502 -14.72033 -14.18058 -13.94088 -13.41810 -13.23598 -12.94602 -12.50881 -12.38998 -12.31617 -11.93042 -11.87325 -11.50050 -11.31823 -11.03952 -10.91654 -10.64699 -10.46661 -10.33652 -10.12482 -9.53847 -9.07760 -8.98179 -8.58775 -8.57239 -7.69618 -6.08001 -4.06930 1.23819 1.33423 3.08567 3.29568 3.35533 3.37212 3.62501 3.82042 4.17695 4.40064 4.59151 4.77605 4.87926 4.91881 4.98779 5.03979 5.19847 5.25452 5.31631 5.41773 5.54149 5.67053 5.68835 5.87257 5.91930 5.95881 6.02768 6.14831 6.21741 6.41061 6.44561 6.62528 6.69956 6.92893 6.94260 7.34049 7.61273 8.25069 8.47581 8.93370 8.99462 9.52084 11.05452 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032675 B = 0.004285 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.731461 B = 6533.550459 C = 6806.713966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.593 5.593 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.535 3.465 13 O -0.541 6.541 14 C -0.169 4.169 15 H 0.122 0.878 16 C -0.147 4.147 17 C -0.091 4.091 18 H 0.127 0.873 19 C -0.045 4.045 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.109 4.109 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.265 0.735 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.596 -17.813 6.353 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.324 5.324 3 C 0.095 3.905 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.322 3.678 13 O -0.419 6.419 14 C -0.190 4.190 15 H 0.140 0.860 16 C -0.184 4.184 17 C -0.110 4.110 18 H 0.144 0.856 19 C -0.045 4.045 20 C -0.140 4.140 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.127 4.127 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.876 -17.615 6.246 20.281 hybrid contribution 0.200 0.741 0.393 0.862 sum -7.677 -16.874 6.638 19.691 Atomic orbital electron populations 1.21681 0.80874 1.02917 1.00491 1.47740 1.06348 1.06873 1.71448 1.19679 0.92457 0.79991 0.98397 1.21341 1.36990 1.07191 0.91274 0.90767 1.24859 0.95223 0.97336 0.95597 1.69897 1.41481 1.23562 1.18665 0.86841 0.80136 0.79737 0.82918 1.19888 1.21040 1.19064 1.19354 0.87351 0.84074 0.77025 1.90655 1.13777 1.87047 1.50381 1.22454 1.01882 0.90706 1.03953 0.85991 1.23080 1.02695 1.01410 0.91261 1.21094 0.99538 0.91405 0.98929 0.85560 1.19198 0.94410 0.95248 0.95672 1.21076 0.95720 0.96952 1.00251 1.21092 0.99748 0.96692 0.96232 1.21127 0.95267 1.00331 0.97963 1.21149 0.96163 0.96568 0.99712 1.21077 1.00334 0.96111 0.95188 0.93583 0.90653 0.92055 0.95158 0.94552 0.92555 0.87899 0.87819 0.85892 0.86196 0.86314 0.86042 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.27 59.85 0.61 1.94 16 2 N -0.59 -12.52 2.86 -182.95 -0.52 -13.05 16 3 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 4 C -0.53 -15.50 9.94 -34.44 -0.34 -15.84 16 5 H 0.07 2.39 8.06 -52.48 -0.42 1.96 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.54 11.20 7.46 -10.98 -0.08 11.11 16 13 O -0.54 -13.54 15.83 5.56 0.09 -13.46 16 14 C -0.17 -2.58 4.92 -91.77 -0.45 -3.03 16 15 H 0.12 1.67 6.44 -51.93 -0.33 1.34 16 16 C -0.15 -1.79 9.57 -26.69 -0.26 -2.05 16 17 C -0.09 -1.29 5.56 -91.74 -0.51 -1.80 16 18 H 0.13 1.99 7.67 -51.93 -0.40 1.59 16 19 C -0.05 -0.58 5.61 -104.62 -0.59 -1.16 16 20 C -0.12 -1.33 9.30 -39.58 -0.37 -1.70 16 21 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 22 C -0.13 -1.26 10.05 -39.59 -0.40 -1.66 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.11 -1.36 9.74 -39.58 -0.39 -1.74 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.82 6.00 -51.93 -0.31 0.50 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.34 16 29 H 0.04 0.96 6.84 -51.93 -0.36 0.61 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.10 0.97 6.17 -51.93 -0.32 0.65 16 33 H 0.12 1.12 6.02 -52.49 -0.32 0.80 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -34.55 312.29 -8.26 -42.81 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.95 Total: 0.89 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.68 Total: -11.78 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.25 Total: -40.27 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.55 -8.26 -42.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.333 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds