Wall clock time and date at job start Mon Mar 30 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.50703 * 109.47077 * 269.99336 * 3 2 1 5 5 H 1.08005 * 119.99703 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00292 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00314 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99869 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47168 * 90.00127 * 8 6 4 10 10 H 1.48497 * 109.46932 * 210.00102 * 8 6 4 11 11 H 1.48501 * 109.47042 * 330.00023 * 8 6 4 12 12 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00135 * 180.27973 * 12 2 1 14 14 C 1.50706 * 119.99766 * 0.02562 * 12 2 1 15 15 H 1.08996 * 115.55231 * 34.41503 * 14 12 2 16 16 C 1.52998 * 117.49548 * 248.74267 * 14 12 2 17 17 C 1.52999 * 117.49514 * 180.08498 * 14 12 2 18 18 H 1.08997 * 117.50050 * 359.97438 * 17 14 12 19 19 C 1.50695 * 117.49974 * 215.00384 * 17 14 12 20 20 C 1.38245 * 119.99898 * 299.72829 * 19 17 14 21 21 C 1.38236 * 119.99621 * 179.78472 * 20 19 17 22 22 C 1.38224 * 120.00362 * 0.44184 * 21 20 19 23 23 C 1.38238 * 120.00235 * 359.81052 * 22 21 20 24 24 C 1.38232 * 119.99614 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 26 26 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 27 27 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 28 28 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 29 29 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 30 30 H 0.96999 * 120.00320 * 179.97438 * 7 6 4 31 31 H 1.08992 * 117.50074 * 0.02562 * 16 14 12 32 32 H 1.09001 * 117.49625 * 145.02711 * 16 14 12 33 33 H 1.07997 * 119.99743 * 359.97438 * 20 19 17 34 34 H 1.08002 * 119.99214 * 180.27354 * 21 20 19 35 35 H 1.07999 * 120.00017 * 179.83215 * 22 21 20 36 36 H 1.08000 * 120.00259 * 179.97438 * 23 22 21 37 37 H 1.08005 * 119.99902 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.3458 3.2571 -2.9127 8 14 3.7351 3.9280 -0.2530 9 1 5.1083 3.5058 0.1225 10 1 3.7509 5.3547 -0.6645 11 1 2.8293 3.7586 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0056 14 6 1.3853 -2.4723 0.0005 15 1 0.4479 -2.4739 -0.5556 16 6 1.4577 -3.3298 1.2656 17 6 2.2074 -3.7627 0.0031 18 1 3.2932 -3.6677 0.0044 19 6 1.6591 -4.9386 -0.7634 20 6 0.4311 -5.4742 -0.4223 21 6 -0.0738 -6.5501 -1.1284 22 6 0.6532 -7.0961 -2.1695 23 6 1.8835 -6.5638 -2.5073 24 6 2.3864 -5.4852 -1.8042 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1499 1.1384 0.5139 30 1 3.8227 4.0830 -3.0900 31 1 2.0499 -2.9498 2.0979 32 1 0.5680 -3.8959 1.5414 33 1 -0.1350 -5.0502 0.3938 34 1 -1.0351 -6.9657 -0.8646 35 1 0.2599 -7.9383 -2.7193 36 1 2.4517 -6.9907 -3.3205 37 1 3.3474 -5.0690 -2.0683 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109028424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:29 Heat of formation + Delta-G solvation = -1.981919 kcal Electronic energy + Delta-G solvation = -18520.435717 eV Core-core repulsion = 15648.725103 eV Total energy + Delta-G solvation = -2871.710614 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27175 -40.02050 -37.45833 -36.53941 -34.70293 -31.83961 -31.56831 -30.54217 -27.46019 -26.00262 -24.72858 -23.51841 -23.09512 -21.28383 -19.84952 -19.16953 -18.52804 -17.59341 -17.21258 -16.45134 -16.05369 -15.99576 -15.60822 -15.12522 -14.84539 -14.38474 -14.22580 -13.93001 -13.76914 -13.67475 -13.59984 -13.23124 -12.83484 -12.75174 -12.47445 -12.19712 -12.04736 -11.90050 -11.77478 -11.60036 -11.38587 -10.86039 -10.71568 -9.79699 -9.49260 -9.41152 -8.36651 -6.42603 0.39509 0.52613 1.31010 1.35562 1.44223 1.61593 2.25997 2.29296 2.71138 2.97542 3.10744 3.51185 3.70489 3.83499 3.97707 4.10266 4.17470 4.25438 4.31544 4.44902 4.62064 4.63733 4.71153 4.74030 4.81000 4.87927 4.93940 5.04791 5.07553 5.17289 5.20851 5.42687 5.58490 5.61194 5.65129 5.74819 6.14396 6.20701 6.58505 6.65676 7.17886 7.37595 8.80590 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.032675 B = 0.004285 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.731461 B = 6533.550459 C = 6806.713966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.603 5.603 3 C 0.223 3.777 4 C -0.540 4.540 5 H 0.025 0.975 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.236 1.236 12 C 0.523 3.477 13 O -0.598 6.598 14 C -0.177 4.177 15 H 0.144 0.856 16 C -0.112 4.112 17 C -0.098 4.098 18 H 0.095 0.905 19 C -0.063 4.063 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.137 4.137 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.269 0.731 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 -19.123 8.544 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.333 5.333 3 C 0.101 3.899 4 C -0.579 4.579 5 H 0.043 0.957 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.159 1.159 12 C 0.312 3.688 13 O -0.480 6.480 14 C -0.198 4.198 15 H 0.162 0.838 16 C -0.149 4.149 17 C -0.117 4.117 18 H 0.113 0.887 19 C -0.063 4.063 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.155 4.155 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.563 -18.944 8.444 23.276 hybrid contribution 1.005 1.043 -0.408 1.505 sum -9.558 -17.901 8.036 21.826 Atomic orbital electron populations 1.21993 0.77461 1.03787 1.03130 1.47884 1.08578 1.05720 1.71099 1.19361 0.92775 0.82506 0.95305 1.21571 1.37072 1.06875 0.92380 0.95671 1.25895 0.95160 0.98918 0.98803 1.70052 1.42618 1.24513 1.21393 0.85670 0.79546 0.77722 0.79735 1.20214 1.19755 1.15912 1.20365 0.87126 0.85797 0.75490 1.90614 1.16465 1.88059 1.52866 1.22331 1.02158 0.87973 1.07352 0.83848 1.23252 1.03292 0.98806 0.89565 1.21010 0.98116 0.91513 1.01054 0.88692 1.19172 0.95720 0.95281 0.96105 1.21329 0.94784 0.97085 1.00849 1.21502 1.00751 0.95941 0.95479 1.21517 0.94555 1.00686 0.97961 1.21384 0.97040 0.96079 0.99945 1.21182 1.00412 0.97515 0.96388 0.89870 0.91618 0.89467 0.92838 0.96377 0.92178 0.88337 0.83643 0.83557 0.83123 0.83664 0.84638 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.27 127.77 1.31 3.60 16 2 N -0.60 -25.39 2.86 -851.13 -2.43 -27.82 16 3 C 0.22 11.19 4.23 85.63 0.36 11.55 16 4 C -0.54 -32.83 9.94 25.60 0.25 -32.57 16 5 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 6 C 0.01 0.62 5.47 84.65 0.46 1.08 16 7 N -0.95 -60.99 13.96 21.44 0.30 -60.70 16 8 Si 0.95 45.15 27.47 68.60 1.88 47.03 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 12 C 0.52 22.27 7.46 87.66 0.65 22.92 16 13 O -0.60 -31.56 15.83 -3.01 -0.05 -31.60 16 14 C -0.18 -5.24 4.92 -11.54 -0.06 -5.29 16 15 H 0.14 3.57 6.44 -2.39 -0.02 3.56 16 16 C -0.11 -2.45 9.57 30.62 0.29 -2.16 16 17 C -0.10 -2.77 5.56 -11.52 -0.06 -2.83 16 18 H 0.09 3.24 7.67 -2.39 -0.02 3.23 16 19 C -0.06 -1.54 5.61 -19.87 -0.11 -1.65 16 20 C -0.12 -2.27 9.30 22.27 0.21 -2.06 16 21 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 24 C -0.14 -3.48 9.74 22.27 0.22 -3.26 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 27 H 0.09 2.08 6.00 -2.39 -0.01 2.07 16 28 H 0.05 2.43 7.13 -2.39 -0.02 2.41 16 29 H 0.02 0.98 6.84 -2.38 -0.02 0.96 16 30 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.15 1.97 6.17 -2.39 -0.01 1.95 16 33 H 0.15 1.91 6.02 -2.91 -0.02 1.90 16 34 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -80.78 312.29 4.91 -75.87 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.01 Total: 13.86 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.20 Total: -16.64 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -2.13 Total: -88.52 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.05 Total: -31.60 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -80.78 4.91 -75.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109028424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.883 kcal (2) G-P(sol) polarization free energy of solvation -80.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds